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Journal of Bacteriology, August 2003, p. 4490-4498, Vol. 185, No. 15
0021-9193/03/$08.00+0 DOI: 10.1128/JB.185.15.4490-4498.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Department of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, Kansas 66506
Received 10 March 2003/ Accepted 29 April 2003
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A model for bacterial shape regulation, the two-competing-sites model, which relates cell shape to a balance between cell wall synthesis along the long axis of a rod-shaped cell and septum-specific peptidoglycan synthesis, has been proposed (21, 24). This model proposes that shape determination in bacterial rods depends on the activity of two peptidoglycan synthesis reactions (sites) which are mutually exclusive. Consequently, the lateral wall is not extended during the septum formation step of cell division, and septal peptidoglycan synthesis does not occur during lateral wall elongation. The shape of the cell is determined by the balance between the competing reactions. The normal balance produces rods, an abnormal prevalence for lateral wall elongation yields filaments, and a prevalence for the site for septum formation leads to the formation of coccobacilli or cocci. Bacteria which have the characteristic coccal shape fall into two categories. Some possess only the site for septum formation and can only exist as cocci, whereas others carry both peptidoglycan biosynthetic sites and can transition to rods when the septum-specific site is blocked by mutation or antibiotic treatment (21).
Mutations in the genome of Escherichia coli which result in altered cell morphology have been identified, but the precise biochemical functions of the affected genes have not been determined. The mre operon of E. coli was identified as a locus associated with cell shape determination and sensitivity to amdinocillin (11, 27-30). The operon consists of five genes, mreBCD, orfE, and cafA. A mutation in mreB or deletion of mreBCD produces a morphological shift in the cell population, resulting in spherical cells. The MreB protein shows sequence similarity to members of the Hsp70 superfamily, as well as to the FtsA cell division protein (6, 14). Inactivation of mreB is associated with an increased activity of the FtsI (penicillin binding protein 3) protein, which is responsible for septal peptidoglycan synthesis (30). It was proposed that this increase leads to hyperseptation activity and spherical cell formation. Introduction of the mre genes on a multicopy plasmid led to a reduction in FtsI activity and an associated filamentation phenotype, presumably due to an increased production of MreB. On the basis of these observations, it was postulated that MreB is a negative regulator of FtsI (30). The roles of the MreC, MreD, and OrfE proteins in shape determination remain undefined.
The MreB homolog of B. subtilis is contained within the divIVB minicell operon (20, 26). This operon contains the mreBCD determinants as well as the minCD minicell-associated genes. A mutant allele of mreD, rodB1, induces the formation of spherical cells. Thus, the B. subtilis mre genes are also associated with cell shape determination. However, it was reported that the B. subtilis mre genes appear to be essential for cell viability, unlike their E. coli counterparts (20, 26). Two additional determinants whose products have substantial sequence identity to MreB have been identified on the B. subtilis chromosome. The mbl determinant appears to play a role in cell morphology, but inactivation of this nonessential determinant does not result in spherical cell formation (1). The mreBH determinant, which maps near kinC on the B. subtilis chromosome, has not been characterized (GenBank accession number D37799). The B. subtilis Mre proteins are even less well studied than their E. coli counterparts. Their sequence similarity to the E. coli Mre proteins, and the phenotype of the rodB1 allele, suggests that their function also involves an interaction with the septum-specific peptidoglycan biosynthetic enzyme, namely, Pbp2B (20, 26, 32).
Introduction of the mreC and mreD genes from Bacillus stearothermophilus into B. subtilis resulted in an overexpression of protease (18). This effect on protease expression required the presence of both mre determinants; no effect was seen with either determinant introduced alone into this host. It has not been determined whether this effect on protease expression is a direct or indirect effect of the production of the B. stearothermophilus MreCD proteins in B. subtilis. The MreC protein has been shown to localize to the division septum in dividing cells of B. subtilis (19).
Jones and coworkers indicated that the MreB and Mbl proteins of B. subtilis are filamentous helical structures which may have a cytoskeleton-like role in bacterial shape determination (17). They proposed a model in which the MreB protein is concerned with cell width control, whereas Mbl is more important in maintaining the linearity of the longitudinal axis of the cell. Their studies confirmed earlier suggestions that the mreB determinant is essential for cell viability but that the mreC and mreD determinants could be inactivated with no loss of viability and only "mild phenotypic consequences." The Streptomyces coelicolor mreB determinant was also shown to be essential for viability, although the mreC gene when inactivated by gene disruption resulted in mutants which were viable but showed significant growth retardation in comparison to the wild type (7). To better understand the biological role of the MreC protein in B. subtilis and to reconcile the conflicting conclusions regarding the essential nature of this determinant, we created a strain of B. subtilis which conditionally expresses the MreC protein and examined the effect of depletion of this protein on growth and morphology of the cell.
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TABLE 1. Bacterial strains and plasmids used in this study
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To induce a switch from teichoic acid to teichuronic acid synthesis, a low-phosphate medium was used as described previously (31).
General methods. Competent E. coli and B. subtilis cells were prepared and transformed by the methods of Dagert and Ehrlich (10) and Erickson and Copeland (13), respectively. Plasmid DNA from E. coli was prepared by the alkaline lysate procedure of Birnboim and Doly (5). Isolation of chromosomal and plasmid DNAs from B. subtilis was performed as described previously (8, 26).
Construction of an MreC-inducible strain. The HincII-HindIII sequence of the multiple cloning site on pUS19 (3) was removed, and the DNA fragment containing the spac promoter and the lacI coding region was excised from plasmid pSI-1 (2, 33) with EcoRI and BamHI and then ligated into the modified pUS19 plasmid cleaved with the same enzymes, generating plasmid pLEE50. A 500-bp fragment encoding the 3' end of mreB was generated by PCR and positioned as a HindIII-SphI fragment downstream of the IPTG-inducible spac promoter of the plasmid pLEE50 to create pLEE100 (Fig. 1). This plasmid cannot replicate in B. subtilis cells, but it contains a spectinomycin resistance determinant which can be expressed in the gram-positive host. Integration of the plasmid into the B. subtilis chromosome at the mreB locus results in mreB expression from the divIVB operon promoter, but expression of mreCD is directed by spac. The distal determinants minC and minD would be driven by both the spac promoter and a weak internal promoter in the divIVB operon (26). The 3' terminus of mreB was positioned downstream of spac, instead of the 5' terminus of mreC. The reason for this was to avoid a duplication of part of the mreC determinant upon integration of the plasmid. It was preferable to have a 5' untranslated leader on the mreC-containing transcript than to have an expressed truncated mreC, which would include its transmembrane domain (19).
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FIG. 1. (A) Integration of pLEE100 into the B. subtilis chromosome. As a result of the plasmid integration, the mreB determinant of the divIVA operon remains under the control of its natural promoter (pdivIVA), whereas the mreB-distal genes in the operon are now under the control of the IPTG-inducible spac promoter (pspac). (B) The mreD-minC-minD determinants, expressed from the divIVA operon promoter, were positioned within the amyE locus (9). Abbreviations: Apr, ampicillin resistance determinant; Spr, spectinomycin resistance determinant; pspac, spac promoter; pdivIVB, divIVB operon promoter.
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To express a truncated form of MreC, the sequence corresponding to the ribosome binding site and the first 504 bp of the mreC open reading frame was amplified by PCR (forward primer, 5' GAGCTCGAGTTCAATAGAAGAG 3'; reverse primer, 5' GCATGCCAGACGTAAAATTGTTAA 3'). The PCR product was cloned as a SacI-SphI fragment immediately downstream of the Staphylococcus aureus lactose operon promoter in plasmid pDG3053 to create plasmid pLEE504. This plasmid is a shuttle plasmid with gram-positive replication functions provided by the staphylococcal plasmid pUB110 and ampicillin resistance and replication functions for E. coli provided by pUC19. Expression from this promoter is constitutive because the plasmid lacks a functional lacR repressor-encoding determinant.
Scanning electron microscopy. B. subtilis cells were cultured to the mid-logarithmic growth phase, and 1 ml of this culture was fixed overnight at 4°C in 20 volumes of modified Karnowsky's fixative (2% paraformaldehyde, 2.5% glutaraldehyde, 1.7 mM CaCl2 in 0.1 M cacodylate buffer [pH 7.4]). After the cells were fixed, they were washed twice in 0.1 M cacodylate buffer (pH 7.4) and postfixed in 1% osmium tetroxide in 0.1 M cacodylate buffer overnight at 4°C. After the cells were washed twice in double-distilled water, they were resuspended in double-distilled water, mounted on coverslips coated with poly-L-lysine, and dehydrated in a series of alcohol solutions (30, 50, 70, 95, and 100%). Dehydrated samples were treated for 5 min with hexamethyldisilazane (Electron Microscopy Supplies, Ft. Washington, Pa.), dried, mounted, and sputter coated with gold (S150A sputter coater). Samples were viewed in a Hitachi H-300 electron microscope with a 3010 scanning image accessory.
Transmission electron microscopy. B. subtilis cells were cultured to the mid-logarithmic growth phase. The cells were pelleted and fixed in modified Karnowsky's fixative, washed, and postfixed in 1% osmium tetroxide as described above. After three 5-min washes in cold double-distilled water, the cells were immobilized in 2% TSA and dehydrated in a series of ethanol solutions (50, 70, 70, 95, and 100%). Dehydrated specimens were stained for 60 min en bloc with 5% uranyl acetate in 70% ethanol, and the dehydration was completed by two 20-min rinses in 100% acetone, which was used as the transitional solvent. The cell blocks were then infiltrated with three increasing concentrations of resin in acetone, ending in 100% resin for periods of 2 to 12 h or 8 to 12 h. All samples were then embedded in Epon LX112 embedding medium for 18 to 20 h at 42°C and then for 24 h at 60°C. Embedded samples were trimmed and sectioned on an Ultracut E-Reichert-Jung ultramicrotome (C. Reichert Optische Werke AG, Vienna, Austria). Thin sections (approximately 80 µm thick) sputter coated with silver and gold were retrieved with copper grids and stained with uranyl acetate and lead citrate. Grids were examined and viewed with a Hitachi H-300 electron microscope.
Muramic acid assay. The peptidoglycan content of the bacterial cells was determined by the method of Hadzija (15). B. subtilis cells were cultured in TSB to the late-logarithmic growth phase, harvested by centrifugation, and washed in TE buffer (10 mM Tris-HCl, 1 mM EDTA [pH 8.0]). The cell amounts were then adjusted to the same culture densities (A500 = 1.8). The cells were then lysed using a mini beadbeater-8 (Biospec Products, Bartlesville, Okla.). Following cell disruption, the samples were incubated for 15 min at 75°C. Samples were kept at -80°C until assayed. The cell wall samples were resuspended with 20 ml of chloroform-saturated TE buffer. DNase (0.5 ml of a 1-mg/ml solution) and RNase (1.0 ml of a 5-mg/ml solution) were added and incubated at 37°C for 30 min. Trypsin (100 µg) was added and incubated at 37°C for 6 h. The cell wall fraction was recovered by centrifugation (12,000 x g, 45 min) and washed one time with TE buffer.
Aliquots of the lysed cells were brought to a 0.5-ml volume with 1.0 M NaOH and incubated at 38°C for 30 min. Then 0.5 ml of 0.5 M H2SO4 and 5 ml of concentrated H2SO4 were added, and the samples were placed in a boiling water bath for 5 min. The samples were cooled, and then 0.05 ml of 4% (wt/vol) CuSO4 · 5H2O and 0.1 ml of 1.5% (wt/vol) p-hydroxydiphenyl (in 95% ethanol) were added. The samples were then incubated at 30°C for 30 min, and the absorbance was determined at 560 nm. A standard curve consisting of 0 to 20 µg of muramic acid (Sigma Chemical Co., St. Louis, Mo.) was utilized in the assay.
Preparation of polyclonal antiserum against MreC. Histidine-tagged MreC protein was purified, and anti-MreC polyclonal antiserum was raised in rabbits as previously described (19).
Western blot analysis. B. subtilis cells were cultured in TSB with or without IPTG to the mid-logarithmic growth phase. The cultures densities were determined spectrophotometrically at 500 nm, and the culture volumes were adjusted to give equivalent cell densities. Equivalent amounts of cells from the cultures were harvested by centrifugation and resuspended in 1 ml of TE buffer. The cells were lysed using a mini beadbeater-8, and the lysate was loaded onto sodium dodecyl sulfate-4 to 20% polyacrylamide gradient gels (Ready Gels; Bio-Rad). The electrophoretically resolved proteins were transferred to a nitrocellulose filter and probed with the anti-MreC antiserum. Goat anti-rabbit immunoglobulin G conjugated to alkaline phosphatase (Sigma Chemical Company) was used as the secondary antibody, and the immunoreactive proteins were detected using nitroblue tetrazolium and 5-bromo-4-chloro-3-indolylphosphate as substrates.
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B. subtilis strain KSS1571 fails to grown on TSA plates lacking the inducer of MreC expression. Only residual growth in the initial area of the streak on the plate is obtained, presumably due to intracellular carryover of IPTG from the overnight broth culture used to inoculate the plates. Therefore, this strain is a conditional mutant which is dependent on the presence of IPTG in the culture medium for growth. This result suggests that MreC is essential for B. subtilis viability.
Effect of MreC concentration on cell growth. Because mreC appeared to be required for growth, B. subtilis KSS1571 was cultured in TSB containing different concentrations of IPTG (0, 10, 50, and 250 µM) to investigate the growth yields of this B. subtilis strain as a function of IPTG concentration. In addition, Western blots of cellular proteins were prepared, utilizing a rabbit polyclonal anti-MreC antibody. The amount of growth achieved with each concentration of IPTG correlated with the amount of MreC protein produced, as indicated by Western blot analysis (Fig. 2). Low levels of MreC observed in the absence of IPTG induction may result from either leaky uninduced expression from the spac promoter or carryover of IPTG from the inoculum culture. The growth level, and the amount of MreC present in cells, is higher in the wild-type strain of B. subtilis than that achieved with strain KSS1571 in the presence of 250 µM IPTG. Increasing the IPTG concentration above 250 µM did not noticeably improve the level of growth or MreC production, and it did not eliminate the changes in cell morphology described below (data not shown). The dependence of cell growth on MreC production supports the conclusion that the MreC protein is an essential protein in B. subtilis. Integration of pLEE100 into B. subtilis lacking the extra copies of the mreD minCD determinants (KSS1572) gives the same growth profile as for KSS1571, indicating that any increased expression of the divIVB-distal determinants were not responsible for the observed growth deficit.
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FIG. 2. Growth and MreC expression by the MreC-inducible strain. B. subtilis KSS1571 was cultured in TSB containing 2 mM IPTG overnight at 37°C, diluted 1:100 in fresh medium supplemented with different concentrations of IPTG, and then incubated for 6 h. MO1099, the wild-type MreC control strain, was cultured in TSB without IPTG. Growth was determined by absorbance at 500 nm (B). Then the cells were harvested and lysed, and the cell lysates were electrophoresed and Western blotted. The blots were probed with rabbit anti-MreC antibody (A). In panel B, the mean values from three determinations are shown, and the range of values is indicated.
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FIG. 3. Morphology of B. subtilis cells. Smears of MO1099 (wild-type parent) (A), KSS1571 cultured in the presence of 250 µM IPTG (B), and KSS1571 cultured in the absence of IPTG (C) were stained with crystal violet and examined by microscopy. All images are at the same magnification.
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FIG. 4. Scanning electron microscopy of MreC-depleted B. subtilis cells. Images are of strain MO1099 (A) and KSS1571 (B to F). The MreC-inducible strain was cultured in the presence of 250 µM (B), 50 µM (C), and 10 µM (D) IPTG and in the absence of IPTG (E and F). (F) The MreC-inducible strain was cultured in the presence of 0.3 M sucrose. Bars in the micrographs are the indicated sizes in micrometers.
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FIG. 5. Transmission electron microscopy of MreC-depleted B. subtilis cells. Images are of strain MO1099 (A) and KSS1571 (B to F). The MreC-inducible strain was cultured in the presence of 250 µM (B), 50 µM (C), and 10 µM (D) IPTG and in the absence of IPTG (E and F). (F) The MreC-inducible strain was cultured in the presence of 0.3 M sucrose. The arrows in panels C and D indicate the areas of polymer accumulation. The arrowhead in panel E indicates a region where the cell wall had become thinner and ruptured. Bars, 1 µm.
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Muramic acid content in MreC-depleted B. subtilis. MreC depletion resulted in morphological changes and lysis of B. subtilis, suggesting that a defect in cell wall biosynthesis may be involved. Peptidoglycan is the major structural component of the gram-positive cell wall and comprises 40 to 90% of the cell wall. To determine whether there was a deviation in peptidoglycan content in the cells that conditionally express MreC when they were grown in medium containing various amounts of IPTG, a muramic acid assay was used. Muramic acid assays in this study suffer from certain limitations. At the lower concentrations of IPTG, cell death and lysis occur in the cultures, which affect both the amount of muramic acid recovered and the dry weight of the harvested cells. Despite these limitations, the muramic acid content remained constant at the different IPTG concentrations and did not differ from the wild-type level (Table 2).
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TABLE 2. Muramic acid content of MreC-deficient cells
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To evaluate the possibility that it is teichoic acid rather than peptidoglycan that is the accumulated polymer, B. subtilis KSS1571 was cultured in a reduced phosphate medium. Under these conditions, the teichoic acid is replaced with teichuronic acid. The morphological changes associated with a defective teichoic acid resulting from a tagF (rodC) mutation were eliminated by the replacement of teichoic acid by teichuronic acid under these growth conditions (31). When KSS1571 was cultured under phosphate-limiting and phosphate-replete growth conditions, there were no differences seen in MreC-dependent growth, morphology, or polymeric material accumulation in the cells (data not shown). Therefore, a switch in synthesis from teichoic acid to teichuronic acid did not override the MreC-associated defect, and it appears the accumulated material is not teichoic acid.
Lack of complementation of MreC activity with a truncated mreC mutant. The mreC mutant described by Jones et al. was created by integrating a plasmid containing an internal fragment of mreC (a 242-bp fragment initiating at the unique HindIII site) into the B. subtilis chromosome (17). The integration event would generate a truncated expressed copy of mreC with positions 1 to 504 of the open reading frame, resulting in the loss of 122 amino acid residues from the protein. We have been unable to obtain viable transformants of B. subtilis utilizing this procedure.
To evaluate the biological activity of the truncated MreC protein, the truncated allele of mreC (contains bp 1 to 504) was positioned downstream of a constitutive S. aureus lactose operon promoter (22) in plasmid pDG3053 to create pLEE504 (Fig. 6A). This plasmid was introduced into the mreC expression strain KSS1571 to produce KSS1573. This isolate exhibits only limited growth and ultimately lyses without the inclusion of IPTG in the culture medium, indicating that the truncated MreC protein lacks sufficient biological activity to support growth (Fig. 6B). Western blot analysis indicated that the truncated MreC protein was expressed in this cell, so a lack of expression was not the explanation for the failure to complement the MreC deficiency (Fig. 6C). In fact, the presence of the plasmid resulted in a higher level of expression of wild-type MreC in the cell. This results from the presence of the pUC plasmid-derived lactose operon operator site in the plasmid, which is able to bind the LacI repressor protein and thus titrate the repressor from the spac promoter operator. Despite this increased production of wild-type MreC, the culture still grew poorly (Fig. 6B) and also displayed the characteristic cell swelling and twisting of MreC-depleted cells (Fig. 6D). The strain expressing the truncated MreC protein grew more poorly than KSS1571 in the absence and presence of IPTG. Thus, the truncated MreC protein is not able to complement the phenotype associated with the loss of MreC protein in the cells, but it appears to be able to compete with the wild-type protein. This gives the cell the appearance of a more severe MreC-deficient phenotype than warranted by the level of full-length MreC in the cell.
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FIG. 6. (A) Map of pLEE504, a shuttle plasmid which expresses the 168-residue truncated form of MreC from the S. aureus lac promoter. The ampicillin resistance determinant (amp), replication protein gene (rep), kanamycin resistance determinant (kan), phleomycin (zeocin) resistance determinant (ble), and NdeI (Nd) and PvuII (Pv) restriction sites are shown. (B) Growth of B. subtilis strains in TSB. Symbols: , KSS1001 (wild type); , KSS1571 cultured in the presence of 1 mM IPTG; , KSS1571 cultured in the absence of IPTG; , KSS1573 cultured in the presence of 1 mM IPTG; , KSS1573 cultured in the absence of IPTG. (C) Western blot of B. subtilis cell lysates probed with rabbit anti-MreC antiserum. Lanes: 1, MO1099 (wild-type control); 2, molecular size markers; 3, KSS1571 grown in the presence of 250 µM IPTG; 4, KSS1571 grown in the absence of IPTG; 5, KSS1573 grown in the presence of 250 µM IPTG; 6, KSS1573 grown in the absence of IPTG. The positions of full-length MreC (32 kDa) and the truncated form of MreC (19 kDa) are indicated. The amount of cell lysate loaded per well was eight times that used in the blot shown in Fig. 2A. (D) Photomicrographs of methylene blue-stained cells. B. subtilis KSS1571 (a and c) and KSS1573 (b and d) were cultured in the presence of 1 mM IPTG (a and b) or in the absence of IPTG (c and d). The arrows in panel b indicate cells that appear swollen and bent.
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The septation process in B. subtilis involves the formation of the FtsZ ring, a structure which then recruits other division-associated proteins (2). This division ring forms the leading edge of the constriction which progresses during the division process. Up to now, there has been no evidence for a sidedness to this cytokinesis ring. The electron microscopic observations reported herein indicate that the septal ring associated with cytokinesis in B. subtilis does indeed have a sidedness to it. The overexpression of the wall polymeric material occurs on one side of the cell. The differences in the cell envelope, or in the ring formed by FtsZ and other division proteins, that accounts for the septal ring asymmetry is unknown.
The mreC determinant is an essential determinant in B. subtilis and appears to function in the septation process. MreC has been shown to localize to the division septum of B. subtilis (19). Truncation of this protein destroys its proper functioning in the cell, although the 168-amino-acid polypeptide does appear to be able to compete with the full-length version of the protein. The truncated protein may be able to compete with the wild-type protein for interaction with another component(s) of the septation apparatus, or if MreC is a multimeric protein, it may be able to be included in the MreC complex, and this inclusion would result in a loss of biological activity.
This work was supported in part by grant GM57049 from the National Institutes of Health.
Contribution 03-298-J from the Kansas Agricultural Experiment Station. ![]()
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B levels and activity in Bacillus subtilis. J. Bacteriol. 175:2347-2356.
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