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Journal of Bacteriology, August 2003, p. 4948-4955, Vol. 185, No. 16
0021-9193/03/$08.00+0 DOI: 10.1128/JB.185.16.4948-4955.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Departments of Microbiology,1 Biochemistry, University of Connecticut Health Center, Farmington, Connecticut 060322
Received 31 January 2003/ Accepted 2 May 2003
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-helical region of the MinE N-terminal domain, consistent with the idea that the MinE-MinD interaction involves formation of a coiled-coil structure by interaction with a complementary helical surface within MinD. |
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MinC is an inhibitor of septation that is given specificity for sites away from midcell by the combined action of MinD and MinE. Expression of the Min proteins is associated with a cycle of Min protein redistribution in which a membrane-associated polar zone containing MinC, MinD, and MinE is formed at one end of the cell. MinE then forms an annular, or ring-like, structure, the E ring, that is located adjacent to the medial edge of the polar zone. This is followed by disassembly of the polar zone and E ring and by formation of a new polar zone at the opposite end of the cell (17). As a result of this repetitive cycle, the proteins oscillate from pole to pole many times during each division cycle. It has been suggested that this process maintains the MinC division inhibitor away from midcell and near the ends of the cell for sufficient time during the division cycle to prevent the aberrant polar-division events that cause the formation of anucleate minicells in the absence of the Min proteins (14).
In vivo studies have suggested that MinD and MinE interact during these events. Thus, MinD is required for the membrane association of MinE, and MinE is required for membrane-associated MinD to redistribute itself into the polar zones, which undergo the pole-to-pole oscillation cycle. In vitro studies have shown that MinE activates the low-level ATPase activity of MinD when phospholipid is present, also implying direct interaction between the two proteins (5). This leads to release of MinD and MinE from phospholipid vesicles (4, 11) and to alterations in MinD organization in vitro (20) and presumably explains the cyclic binding and release of the Min proteins during the oscillation cycle.
Genetic and biochemical studies have shown that MinE consists of two structurally and functionally distinct domains. The C-terminal domain of MinE (MinE32-88) is responsible for its topological specificity function. Thus, this domain is required for the ability of MinE to prevent minicell formation, to form MinE rings, and to induce formation of MinCDE polar zones, but it does not counteract the action of the MinC division inhibitor in MinCD+ cells (13, 22). In contrast, the N-terminal segment of MinE (MinE1-22 or MinE1-31) is unable to prevent minicell formation but is similar to full-length MinE in its ability to counteract the action of the MinC division inhibitor in the presence of MinD (13, 22). The N-terminal MinE fragment suppresses the filamentation that occurs when MinC and MinD are expressed at normal levels but does not suppress the filamentation that occurs when MinC is expressed at high levels in the absence of MinD. This led to the suggestion that the suppression of the filamentation phenotype requires interaction between MinD and a site within the N-terminal MinE domain (22).
MinE6-35 is predicted to exist as an
-helix, with a tendency to form a coiled-coil structure in which two
-helices coil around each other (9). Consistent with this hypothesis, nuclear magnetic resonance studies have shown that MinE1-22 exists in solution as a nascent
-helix (9) and that a portion of the predicted MinE6-35 helix is visible at the N terminus of the MinE31-88 three-dimensional structure, as determined by multidimensional nuclear magnetic resonance analysis (10). These observations led to the suggestion that the MinE-MinD interaction during the normal division cycle involves the association of one face of the MinE6-35
-helix with a complementary helical site within MinD (9, 10). In the present work, site-directed mutagenesis within the MinE N-terminal domain was used to test certain predictions of this model.
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minCDE) (18). Unless otherwise noted, plasmid-containing E. coli strains were grown at 37°C in Luria-Bertani (LB) medium containing the required antibiotics. For determination of the cell division phenotype, an overnight culture in LB containing 0.25% glucose was diluted 200-fold in LB containing 10 µM IPTG (isopropyl-ß-D-thiogalactopyranoside) and grown to an optical density at 600 nm (OD600) of
0.9. Plasmids. Subscripts in the names of genes indicate the protein products (e.g., minE1-31 indicates a minE fragment coding for amino acids 1 to 31; minEL22R indicates a mutant allele coding for a mutant protein in which amino acid 22 has been changed from leucine to arginine). Tables 1 and 2 list the plasmid genotypes.
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TABLE 1. Plasmids used for determination of cell division phenotype and fluorescence microscopya
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TABLE 2. Plasmids used in yeast two- and three-hybrid assaysa
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pYEC plasmids (Plac-yfp::minD minE::cfp), coding for proteins in which Yfp (yellow fluorescent protein) was fused to the N-terminal end of MinD and Cfp (cyan fluorescent protein) was fused to the C-terminal end of mutant MinE, were constructed by three fragment ligations between (i) the XbaI/XmnI fragment from pYLS68 (Plac-yfp::minD minE::cfp) (19), containing a minD fragment; (ii) the XbaI/BamHI fragment from pYLS68 that contains yfp, cfp, and the pMLB1113 vector; and (iii) XmnI/BamHI fragments from pEM plasmids (see above) containing mutant minE alleles. pMEC plasmids (Plac-minE::cfp) were constructed by ligating the XmnI/HindIII fragment containing minE::cfp from pYLS68 (19), or from pYEC plasmids containing mutant minE::cfp alleles (see above), into the SmaI/HindIII site of the pMLB1113 vector (1).
pYLS41G (Plac-minE::gfp) was generated by ligation of the XmnI/HindIII fragment from pSY1083G (19) that contains minE::gfp into the SmaI/HindIII site of the pMLB1113 vector. pMEG25 (Plac-minEI25R::gfp) was constructed similarly, using the XmnI/HindIII fragment containing minEI25R::gfp from pEG25, which was obtained by religation of BamHI-treated pEM25 to generate an in-frame minEI25R::gfp fusion. pMA101 (Plac-minE1-31::gfp), pMA102 (Plac- minE32-88::gfp), and pMA22 (Plac-minE1-31,L22S::gfp) were constructed by ligation of the large EcoRI/BamHI fragment from pSY1083 that contains gfp and the pMLB1113 vector to fragments containing minE1-31, minE32-88, or minE1-31,L22S, which were obtained by PCR using pSY1083 and pEM22S as templates.
Yeast two- and three-hybrid systems. Plasmids coding for the appropriate BD and AD fusion proteins (Table 2) were transformed into Saccharomyces cerevisiae SFY526 containing the Gal4-inducible reporter gene lacZ (Clontech). Plasmid-containing cells were obtained and characterized, and further analysis was performed as described in the Clontech manual. Interaction between the BD and AD probes was monitored after 3 days of growth at 30°C by ß-galactosidase activity, as estimated from colony color on X-Gal (5-bromo-4-chloro-3-indolyl-ß-D-galactopyranoside) plates and by liquid assay (Clontech manual, protocol PT3024-1); specific activity is given in Miller units (12) and represents the average of three independent measurements. Three-hybrid assays utilized the pBridge vector; the third protein inserted downstream of PMet was induced by growth in the absence of methionine.
Fluorescence microscopy. Cells were grown in the presence of 10 µM IPTG, and Yfp-, Cfp-, and Gfp-labeled proteins were detected by fluorescence microscopy as previously described (19). Oscillation rates were determined as previously described (19) and are given as the average for 12 to 15 cells. The oscillation rate of the MinD polar zone in pYLS68 (Plac-yfp::minD minE::cfp) was 0.15 ± 0.07 cycles/min, similar to values previously described for cells containing doubly labeled MinD and MinE (3, 19).
Cell fractionation. Cells were suspended in SHD buffer (20% sucrose, 10 mM HEPES, 5 mM dithiothreitol), broken using a French pressure cell, and centrifuged at 3,000 rpm at 4°C for 10 min in a Beckman Microfuge 18 centrifuge to remove unbroken cells (8). The supernatant fraction was centrifuged for 90 min at 100,000 rpm at 4°C in a Beckman TL100 centrifuge to obtain the crude cytoplasmic (supernatant) and membrane (pellet) fractions for Western blot analysis. Coomassie blue-stained sodium dodecyl sulfate (SDS) gels confirmed that the pellet contained all of the detectable major outer membrane protein bands with negligible amounts of the protein bands that characterized the cytoplasmic fraction.
Western blot analysis. Western blot analysis was performed as previously described on SDS extracts of intact cells (21) or of membrane and cytoplasmic fractions. Protein concentrations were determined by bicinchoninic acid assay (Pierce) of the SDS extracts. For quantitation of individual proteins, 10-, 20-, or 30-µg samples were subjected to Western blot analysis as previously described, using polyclonal anti-MinD or anti-MinE2-19 antibody (21). The relative intensities of the stained bands were determined on digitized images using the ImageQuant program (Molecular Dynamics). For assays of hybrid proteins in yeast, cultures were grown in synthetic dropout (minus Leu, minus Trp, minus Met) medium (Clontech), and proteins were extracted by the trichloroacetic acid method (Clontech manual, protocol PT3024-1). Protein extracted from 0.5 OD600 unit of cells was analyzed using polyclonal antibody (Clontech) directed against the hemagglutinin tag that is part of the fusion protein.
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TABLE 3. Min protein interactions in yeast two-hybrid system
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50% in ß-galactosidase activity (Table 4). This may reflect the presence in MinE32-88 of the C-terminal portion of the MinE6-35
-helix that is believed to be responsible for the MinE-MinD interaction (9) (see below). The ability to perturb the MinC-MinD interaction provided a second assay for mapping the interacting site. |
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TABLE 4. Min protein interactions in yeast three-hybrid system
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The full-length MinE protein (MinE1-88) was highly effective in interfering with the MinC-MinD interaction, although it showed very little activity when assayed for the ability to interact directly with MinD (Table 3). The cause of the difference in behavior of full-length MinE in the two assays is not known. Further work will be needed to determine whether it reflects an inhibitory effect of the Gal4 BD, when fused to full-length MinE, on the accessibility of the MinD BD or whether the difference in behavior has implications for the in vivo functions of the Min proteins in E. coli.
If the region of MinE1-31 that interacts with MinD exists in an
-helical conformation, residues within MinE1-31 that functionally interact with MinD would be expected to cluster on one face of the helix. To examine this prediction, we mutagenized conserved residues (10) that are distributed around the predicted MinE1-35 helix. In each case, the mutation changed a nonpolar to a polar amino acid, or vice versa. The mutant proteins were then assayed in the two-hybrid and three-hybrid assay systems for the ability to interact with MinD or to disrupt the MinC-MinD interaction. For convenience, we divided the predicted helical surface into two faces, called the A and B faces (Fig. 1).
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FIG. 1. Helical-wheel projection of MinE1-35 amino acid residues. The positions of MinE amino acid residues 1 to 35 are indicated on the surface of the predicted N-terminal -helix. Mutated amino acids are indicated in large type. The colors indicate the effects of mutations on MinE-MinD interaction in yeast two-hybrid and three-hybrid assays (Tables 3, 4, and 5). Red, complete loss of activity in both assays; orange, partial loss of activity; blue, no effect. a through g, positions of amino acids in the helical wheel.
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TABLE 5. Effects of MinE mutations on MinD-MinE interaction in two-hybrid systema
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-helix and a complementary site within MinD (9). It has been shown that mutation of Lys19 (K19Q) or double mutations that included Lys19 or Ala18 were associated with a significant decrease in the ability of MinE to stimulate MinD ATPase activity (5). These observations are consistent with the yeast two- and three-hybrid results.
Effects of MinE mutations on Min protein localization.
Proteins labeled with Gfp, Yfp, and Cfp (19) were used to study the effects of the MinE mutations on the cellular localization of fluorescently labeled MinD and MinE when minE and minD were coexpressed in RC1 (
minCDE) cells. These studies showed that mutations that led to complete loss of interaction in the two-hybrid assay systems (minEA18T, minEI25R, and minEL22R) were associated with loss of the normal distribution patterns of the proteins, as shown by the absence of MinD polar zones and MinE rings and polar zones (Fig. 2D and D ', E and E', and F and F').
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FIG. 2. Fluorescence microscopy of labeled MinD and MinE. Cells were prepared from strain RC1 ( minCDE) containing the following plasmids: pYLS68 (Plac-yfp::minD minE::cfp) (A and A'); pYEC19 (Plac-yfp::minD minEK19A::cfp) (B and B'); pYLS68 (C and C'); pYEC18 (Plac-yfp::minD minEA18T::cfp) (D and D'); pYEC25 (Plac-yfp::minD minEI25R::cfp) (E and E'); pYEC22 (Plac-yfp::minD minEL22R::cfp) (F and F'); pWEC1 (Plac-minE::cfp) (G); pMEG25 (Plac-minEI25R::gfp) (H); pMEC22 (Plac-minEL22R::cfp) (I); pMEC22S (Plac-minEL22S::cfp) (J); pYLS41G (Plac-minE::gfp) (K); pMA101 (Plac-minE1-31::gfp) (L); and pMA102 (Plac-minE32-88::gfp) (M). (A, A', B, and B') Fixed cells. (C to M) Unfixed cells. Yfp and Gfp are green, and Cfp is blue. MinE-Cfp images were acquired 10 s after the corresponding Yfp-MinD images. The labels to the left and right of the fluorescence images indicate the minE alleles of the corresponding images. WT, wild type. (N and O) Western blot analyses of cells from the experiments described in panels A to F and the corresponding experiments described in the text. (P) Western blot analysis of cells from the experiments described in panels K and L. (Q) Western blot analysis of cell fractions from cells expressing minE::gfp and minE1-31::gfp from plasmids pYLS41G (Plac-minE::gfp) and pMA101 (Plac-minE1-31::gfp), respectively. p, membrane (pellet fraction); s, cytoplasm (supernatant fraction); t, total extract. The aliquots applied to each lane were derived from 0.04 OD600 unit of cells for lanes 1 to 6 and 0.02 OD600 unit of cells for lanes 7 to 12. Anti-MinE2-19 antibody was used for panels N, P, and Q; anti-MinD antibody was used for panel O.
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TABLE 6. Phenotypes of MinE mutants
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Many of the minEL22S cells that contained polar zones showed marked abnormalities in their patterns of assembly and disassembly. In cells expressing wild-type MinE together with MinD (Fig. 3A), the assembly of a polar zone at one end of the cell is followed by its shrinkage from midcell toward the pole, terminating in its disappearance from the original cell pole (2), apparently by release into the cytoplasm (16). A new polar zone is then assembled at the opposite end of the cell. In contrast, in the minEL22S cells (Fig. 3B), the disappearance of MinD from the polar zone was often not followed by formation of a new polar zone at the opposite cell pole. Instead, after the disappearance of the polar zone, MinD was present around the entire cell periphery, presumably membrane associated, suggesting that the disappearance of the polar zone might be accomplished by the random redistribution of MinD within the cytoplasmic membrane. This was followed by retraction of the membrane-associated MinD from the original pole, leading to accumulation of MinD within a "new" polar zone at the opposite cell pole (Fig. 3B). Thus, in contrast to the normal situation, the new MinD polar zones in many minEL22S cells appeared not to be formed de novo but often reflected membrane-associated MinD that was left at one cell pole as a result of the disappearance or redistribution of membrane-associated MinD from the other end of the cell. The rate of disassembly of the membrane-associated MinD was much lower than that of the disassembly of MinD polar zones in cells expressing wild-type MinE (Fig. 3A) (19). Interestingly, this phenotype resembled in part the phenotype resulting from mutation at the MinED45/V49 site within the C-terminal topological-specificity domain of MinE that is required for E-ring formation, where a general peripheral distribution of MinE was often followed by retraction from one end of the cell (19). The possible implications of this similarity remain to be explored.
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FIG. 3. Oscillation of Yfp-MinD in living cells. Time lapse fluorescence micrographs of Yfp-MinD in strain RC1 containing pYLS68 (Plac- yfp::minD minE::cfp) (A) and pYEC22S (Plac-yfp::minD minEL22S::cfp) (B). The time at which the image was acquired (in seconds) is indicated in each micrograph. The cells were observed at 15-s intervals between micrographs to confirm that no dramatic change occurred during the intervals. In one image in each panel, as indicated, fluorescence from MinE-Cfp was captured. The arrows indicate the MinE ring (R) and the MinD polar zone (PZ).
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40% of the rate in wild-type cells. A similar observation was made by Hu and Lutkenhaus (5), who observed a decrease in the oscillation rates of
50% in the presence of two other mutations affecting the Lys19 residue (minEK19Q and minEK19A,E20A). In the remaining mutants, essentially all cells contained polar zones and E rings and the oscillation rates of the polar zones were not significantly perturbed.
Effect of MinE mutations on cell division phenotype.
Expression of normal levels of MinCD in the absence of MinE leads to a general inhibition of septation, leading to formation of long nonseptate filaments (1). The filamentation can be prevented by expression of either full-length MinE or N-terminal MinE fragments (1, 13, 22). To determine the effect of the minE mutations on the cell division phenotype, the mutant alleles were substituted for wild-type minE in plasmid pSY1083 (Plac-minCDE), and the cell division phenotype was determined in host strain RC1 (
minCDE) after IPTG induction. The ability to counteract the division inhibition is thought to require interaction between MinD and a site within the N-terminal MinE domain (22). Consistent with this view, MinE mutations that led to complete loss of MinD-MinE interaction in the two-hybrid system (mutations A18T, I25R, L22R, and L22S) were associated with a filamentation phenotype (Fig. 4B to D and Table 6). Mutation K19A, which led to significant but not total loss of detectable interaction in the two-hybrid assay (Table 5), showed a mixture of filaments, minicells, and cells of approximately normal length. We assume that this mixed phenotype represented the effects of different levels of expression of the partially active MinEK19A protein in different cells within the culture.
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FIG. 4. Effects of minE mutations on cell division patterns. Micrographs of Nomarski images of RC1 containing pSY1083 (Plac-minC minD minE) (A), pEM22S (Plac-minC minD minEL22S) (B), pEM25 (Plac-minC minD minEI25R) (C), and pEM19 (Plac-minC minD minEK19A) (D) are shown. The cells were prepared and analyzed as previously described (1).
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Membrane localization of MinE in the absence of MinD. It has been shown that full-length MinE (MinE1-88) fails to localize to the peripheral portion of the cell unless MinD is coexpressed, indicating that MinD is required for the membrane association of MinE (2, 15). These observations were confirmed in the present study, where MinE-Cfp and MinE-Gfp, when expressed in the absence of MinD, were diffusely distributed within the cell (Fig. 2G and K), indicating a cytoplasmic localization. However, in contrast to full-length MinE, MinE1-31-Gfp showed a peripheral distribution even when expressed in the absence of MinD (Fig. 2L). This unexpected result was obtained in several independent experiments and was seen in living cells as well as fixed cells. This suggested that the MinE1-31 protein was able to associate with the cell membrane in the absence of MinD. The possibility that the difference between the behaviors of full-length MinE and MinE1-31 was due to differences in cellular concentration was excluded by immunoblot analysis, which showed that the cellular concentrations of MinE1-88-Gfp and MinE1-31-Gfp were similar (Fig. 2P).
The distributions of MinE1-88-Gfp and MinE1-31-Gfp were also examined in crude cytoplasmic and membrane fractions of cells that expressed minE1-88::gfp or minE1-31::gfp in the absence of minD (Fig. 2Q). The results were consistent with the fluorescence localization studies in intact cells (Fig. 2L). Nearly all of the MinE1-88-Gfp was recovered in the cytoplasmic fraction, whereas >70% of the MinE1-31-Gfp was recovered in the crude membrane fraction.
In the case of several of the mutant alleles (minEI25R, minEL22R, and minEL22S), the full-length MinE-Cfp protein also showed a peripheral distribution when expressed in the absence of MinD (Fig. 2H to J). The observations were reproducible. These unexpected results, which are surprising in view of the fact that MinD is required to bring wild-type MinE1-88 to the membrane, are discussed further below.
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Although the mutations that were originally introduced into the N-terminal MinE domain were designed to be distributed on both faces of the MinE1-31 helical region, it was striking that the mutations that affected the MinD-MinE interaction were located exclusively on one face of the helix, the A face, where they defined an extended contiguous surface domain. Because the MinE6-35 helical region is predicted to have a propensity to form coiled-coil structures (9), it is reasonable to speculate that the site on the A face interacts with a corresponding surface on an
-helix within MinD to form a supercoiled structure. The relatively large area of the putative MinD-binding site on the A face, involving two or three turns of the helix, is consistent with the idea that it represents a surface that interacts in a side-by-side configuration with a surface-exposed
-helix in MinD. We presume that this interaction plays an essential role in the ability of MinD to bring MinE to the membrane and possibly in other MinE/MinD-dependent functions of the Min system. Mutations that interfered with MinD-MinE interactions in the two-hybrid system were associated with the complete or partial absence of MinD polar zones and E rings. This is consistent with the idea that interaction between MinD and the putative binding site on the A face of MinE1-31 plays an important role in the ability of MinE to promote the membrane redistribution events that lead to formation of the MinD polar zone. The mutations also interfered with the ability of MinE to counteract the MinCD division inhibitor, consistent with the idea that this function requires that MinE be brought to the membrane in a reaction that needs interaction with MinD (15).
It is not known whether binding to MinD is the only function of the N-terminal domain of MinE. Full-length MinE does not localize to the cytoplasmic membrane of E. coli in the absence of MinD, as shown by the diffuse distribution of MinE-Gfp within the cell. This indicates that MinE requires MinD to move from cytoplasm to membrane (references 2 and 15 and this study). In contrast to the behavior of full-length MinE, it was observed in the present study that MinE1-31-Gfp expressed in the absence of MinD was located around the periphery of the cell, in a pattern that is usually interpreted to indicate association with the membrane or cell envelope. This interpretation was supported by the finding in extracts of these cells that MinE1-31 was recovered primarily in the membrane fragment whereas full-length MinE was found almost exclusively in the cytoplasmic fraction. Several of the MinE mutant proteins showed similar peripheral cellular localization patterns when expressed in the absence of MinD, even when present as full-length proteins. The apparent membrane localization of MinE1-31 and of the mutant proteins may represent experimental artifacts, in which the mutations or the removal of the MinE C-terminal domain uncovers nonspecific and biologically irrelevant membrane-binding sites within the N-terminal MinE1-31 domain. This would be consistent with current models, in which MinD is the sole membrane anchor for membrane-associated MinE. However, the present observations may instead provide a clue that MinE1-31 contains membrane-binding sites that function after MinE is brought to the membrane by MinD. According to this view, the membrane-binding sites within MinE1-31 are normally occluded by the C-terminal domain and can be exposed as a result of conformational changes during the MinD-dependent membrane assembly process or experimentally by removal of the C-terminal domain or by certain mutations. The putative MinE-membrane interaction could act to stabilize the membrane association of the E ring or could play another role in MinE function. Further work will be needed to test these ideas.
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