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Journal of Bacteriology, February 2003, p. 1027-1036, Vol. 185, No. 3
0021-9193/03/$08.00+0 DOI: 10.1128/JB.185.3.1027-1036.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Rhamnolipid Surfactant Production Affects Biofilm Architecture in Pseudomonas aeruginosa PAO1
Mary E. Davey, Nicky C. Caiazza, and George A. O'Toole*
Department of Microbiology and Immunology, Dartmouth Medical School, Hanover, New Hampshire 03755
Received 10 June 2002/
Accepted 6 October 2002

ABSTRACT
In response to certain environmental signals, bacteria will
differentiate from an independent free-living mode of growth
and take up an interdependent surface-attached existence. These
surface-attached microbial communities are known as biofilms.
In flowing systems where nutrients are available, biofilms can
develop into elaborate three-dimensional structures. The development
of biofilm architecture, particularly the spatial arrangement
of colonies within the matrix and the open areas surrounding
the colonies, is thought to be fundamental to the function of
these complex communities. Here we report a new role for rhamnolipid
surfactants produced by the opportunistic pathogen
Pseudomonas aeruginosa in the maintenance of biofilm architecture. Biofilms
produced by mutants deficient in rhamnolipid synthesis do not
maintain the noncolonized channels surrounding macrocolonies.
We provide evidence that surfactants may be able to maintain
open channels by affecting cell-cell interactions and the attachment
of bacterial cells to surfaces. The induced synthesis of rhamnolipids
during the later stages of biofilm development (when cell density
is high) implies an active mechanism whereby the bacteria exploit
intercellular interaction and communication to actively maintain
these channels. We propose that the maintenance of biofilm architecture
represents a previously unrecognized step in the development
of these microbial communities.

INTRODUCTION
Although bacteria are commonly viewed as solitary life forms,
these organisms are more typically colonial creatures. In their
natural settings, bacteria persist within microbial communities,
where they exploit elaborate systems of intercellular interaction
and communication to adjust to changing environmental parameters.
Moreover, biofilm formation has also been linked to the emergence
of a variety of opportunistic human pathogens (
5). For example,
organisms such as
Staphylococcus epidermidis and
Pseudomonas aeruginosa form biofilms on implants and dead or living tissue,
thereby contributing to a variety of persistent infections.
Thinking about bacterial populations as connected organisms capable of concerted multicellular activities has provided researchers with novel insights into microbial biology. The key to such multicellular behavior lies in the ability of each individual cell to sense and respond to information from nearby cells, and this behavior requires a certain population size or quorum of cells. The development of biofilms is a process that involves both a quorum of cells and multicellular behavior (6). Single-species biofilms are of particular interest due to their clinical importance and the monospecies biofilms formed by P. aeruginosa has become a prominent model for studying this aspect of microbial biology.
The complex structure of microbial biofilms has only recently been determined. Detailed analysis by scanning confocal laser microscopy has shown that biofilms of P. aeruginosa formed on solid surfaces and exposed to a continuous flow of fresh nutrients are open, highly hydrated structures consisting of cells embedded in an extracellular matrix filled with large void spaces (14). These void spaces, or channels, allow fluids to flow throughout the biofilm, resulting in the distribution of nutrients and oxygen. In addition, the channels between macrocolonies may also provide a means of removing metabolic end products.
It has been hypothesized that open-channel formation is not a stochastic process but instead represents an active process that creates a preferable structural design. For example, under some conditions P. aeruginosa mutants unable to make quorum-sensing molecules initiate biofilm formation but are unable to make normally structured biofilms (7). Other P. aeruginosa mutants, including those deficient in flagellum and pilus synthesis, as well as those with mutations in global regulators such as gacA and crc, have defects in the initial colonization of a surface (9, 22, 24, 27). Taken together, these data suggest that formation of the distinctive architecture of P. aeruginosa biofilms, including the macrocolonies surrounded by fluid-filled channels, is a regulated developmental process requiring distinct genetic surface structures and regulatory elements (23, 29, 30, 35). However, mechanisms by which the bacteria maintain these channels once they form have not been investigated. Our data indicate P. aeruginosa not only regulates development of its distinctive biofilm architecture but, once channels form, this organism utilizes rhamnolipid surfactants to actively maintain the void spaces surrounding macrocolonies. That is, we propose that rhamnolipids are not required for the formation of macrocolonies and channels but participate in the maintenance of channels once they are formed.

MATERIALS AND METHODS
Bacterial strains, plasmids, and media.
P. aeruginosa PAO1 was the wild-type strain used in the present
study (
13), and the
rhlA::Tn
5 mutant strain was described previously
(
19). Plasmid pSMC21 (GFP
+ Ap
r Kn
r) constitutively expresses
gfp and was used to label the strains for microscopy studies
(
1), and plasmid pMH520 contains a
rhlA::
gfp transcriptional
fusion (a gift from Matt Parsek, Northwestern University). All
flow cell experiments were performed in EPRI medium as described
previously (
7), except that morpholinepropanesulfonic acid served
as the buffer (2.2%) and the medium was supplemented with phosphate
(0.0019% KH
2PO
4, 0.0063% K
2HPO
4). Dirhamnolipids were purified
from the supernatant of
P. aeruginosa as described previously
(
37) and were a gift of Thea Norman at Microbia, Inc. (Cambridge,
Mass.).
Microtiter dish assay for biofilm formation and flow chamber experiments.
For the biofilm formation assay, M63 medium (100 µl/well) containing arginine (0.05%) and MgSO4 (100 µM) is inoculated (1:50) with an overnight L-broth-grown culture as described previously (25). The microtiter plates were then incubated at 37°C for the times indicated. The biofilm is macroscopically visualized by addition of 100 µl of a 0.1% solution of crystal violet to each well. Biofilm formation was quantified by the addition of 125 µl of 100% ethanol to each crystal violet-stained microtiter dish well; after 10 min 100 µl was transferred to a new microtiter dish, and the absorbance was determined with a plate reader at 550 nm.
Biofilms were also cultivated in flow chambers with channel dimensions of 5 by 1 by 30 mm. The flow system was assembled as described previously (4). The flow cell was inoculated from overnight L-broth-grown cultures diluted 10-fold in EPRI medium (final concentration, 108/ml). The medium flow was turned off prior to inoculation and for 1 h after inoculation. Thereafter, medium was pumped through the flow cell at a constant rate (1.8 ml/h) for the duration of the experiment. The flow was controlled with a PumpPro MPL (Watson-Marlow).
Microscopy and staining.
A Leica DM IRB inverted microscope (Leica Microsystems, Wetzlar, Germany) equipped with a cooled charge-coupled device digital camera and a x10 or x63 PL Flotar objective lens was used for epifluorescence and phase-contrast microscopy analyses. With this instrument, digital images were captured and processed by using a G4 Macintosh computer with OpenLab software package (Improvision, Coventry, England). The images were processed for publication by using Photoshop software (Adobe, Mountain View, Calif.). Quantitative analysis of the flow cell-grown biofilms was performed with the COMSTAT image analysis software package (11, 12).
Mixing experiments.
Mixing experiments were performed by inoculating
107 bacteria of both the wild type (carrying the pSMC21 gfp+ plasmid) and the rhlA mutant into the same channel of the flow cell. Biofilms were allowed to form for 6 days, and then the cells were stained with 5-cyano-2,3-di-4-tolyl-tetrazolium chloride (CTC; Polysciences, Inc., Warrington, Pa.), a metabolic stain that renders metabolically active cells red. Cells expressing green fluorescent protein (GFP) quenched the red fluorescence and thus allowed the wild type and the rhlA mutants to be distinguished. Channels inoculated with the wild type alone or with the rhlA mutant alone were included in each experiment as controls. No difference in architecture or staining was observed when the rhlA mutant carried the GFP-expressing plasmid (data not shown).
Invasion experiments.
The wild-type strain was allowed to form a biofilm in a flow cell for 6 days. The biofilm was stained with CTC for 1 h in the absence of flow, and then flow resumed for 2 h to remove the residual dye. This preformed, stained biofilm was "invaded" with
107 wild-type cells carrying the pSMC21 gfp+ plasmid, and the flow was stopped for 1 h. After the resumption of flow for an additional hour to remove the unattached bacteria, the biofilm was examined for red and green fluorescence, and the individual images were merged to form a composite of preformed biofilm cells and GFP-labeled invading cells.

RESULTS
Rhamnolipids are required to maintain biofilm architecture.
It was shown previously that the
lasR-lasI quorum-sensing system
in
P. aeruginosa is involved in the later stages of biofilm
differentiation, when cell density is sufficient to constitute
a quorum (
7). A biofilm produced by the
lasI mutant is undifferentiated,
i.e., the cells appear to grow as a continuous sheet on the
surface lacking the characteristic water channels, indicating
that
P. aeruginosa has one (or more) systems to control the
formation of macrocolony structures. Because
lasI controls a
whole suite of genes, the specific gene products contributing
to this phenotype were unknown. One function controlled by the
lasI-lasR system (indirectly via the
rhlI-rhlR system) is rhamnolipid
biosynthesis. Therefore, we investigated the biofilm formation
phenotype of a mutant strain unable to synthesize rhamnolipids.
The quorum-sensing-controlled
rhlA gene codes for a rhamnosyltransferase
whose only known function is in rhamnolipid synthesis. An
rhlA mutant does not make rhamnolipids (
20,
21).
To study the role rhamnolipids played in the formation of surface-attached communities, we monitored biofilm development of wild-type P. aeruginosa PAO1 and a rhlA-null mutant. Early biofilm formation was assayed in the microtiter dish assay. The wild-type strain forms a biofilm that peaks at 8 h and then declines at 24 h (Fig. 1A). Previous studies indicated that the P. aeruginosa biofilm formed in a 96-well microtiter dish declines after ca. 10 h of incubation, probably due to starvation in this batch culture system (25). In contrast, the biomass of the rhlA mutant biofilm continued to increase over this 24-h period to a final A550 value twofold greater than the maximum observed for the wild type. There was no discernible difference in the planktonic growth of these two strains. These data suggest that the rhlA mutant is more proficient at early colonization than is the wild-type strain.
We followed further biofilm maturation over the course of 6
days by using a once-through flow cell system that provides
a continuous supply of fresh nutrients to the biofilm. To monitor
the bacteria by epifluorescence microscopy, the strains were
transformed with plasmid pSMC21, which constitutively expresses
the GFP. We had shown previously that this plasmid is maintained
in the absence of antibiotic selection and confers no detectable
metabolic load on the cells (
1).
Macrocolony formation by the wild-type and rhlA strains appeared to be identical after 4 days of incubation (Fig. 1B). Both strains formed well-defined fluorescent (green) colonies separated by dark, fluid-filled channels. This observation indicates that the small advantage gained by the rhlA mutant in initial colonization in a microtiter dish assay (Fig. 1A) does not translate to an observable phenotype in the architecture of the 4-day-old flow cell-grown biofilm. By day 6, wild-type architecture was comprised of characteristic macrocolonies surrounded by open channels. The rhlA mutant, however, produced a biofilm that was a thick, uniform mat of bacterial cells (Fig. 1B). Visualizing the biofilm at a lower magnification confirmed the difference in architecture (Fig. 1C). These data indicated that the rhlA mutant was able to form the channels surrounding the macrocolonies but was unable to maintain these channels.
Quantitative analysis of biofilm architecture.
Visual inspection of biofilms produced by wild-type and the rhamnolipid mutant at day 6 indicated an altered biofilm structure for the mutant. To confirm this observation, we applied the COMSTAT image analysis program to perform a quantitative analysis of biofilm architecture (11, 12). As shown in Table 1, four variables (mean thickness, substratum coverage, roughness coefficient, and surface/volume ratio) were used to evaluate biofilm architecture. The mean thickness of the biofilm and the percent substratum coverage were much higher in the biofilms formed by the rhamnolipid mutant, a finding consistent with the images shown in Fig. 1. The roughness coefficient was much lower in the mutant, demonstrating that biofilms produced in the absence of rhamnolipids are much less heterogeneous. In addition, the surface/volume ratio was significantly lower in the biofilm produced by the mutant, indicating that a smaller fraction of the biomass is exposed to the nutrient flow. These data confirm the visual observation that the rhlA mutant produces a biofilm consisting of a thick, uniform mat of bacterial cells.
Partial rescue of the rhlA biofilm architecture defect by the wild-type strain.
If the defect in biofilm development is the result of a lack
of rhamnolipid production, it follows that providing rhamnolipids
should restore wild-type biofilm architecture. Rhamnolipids
are likely produced by a certain subset of cells in response
to specific environmental cues, resulting in surfactant production
at a specific time and place, as has been reported elsewhere
(
8). Consistent with this idea, providing spent supernatants
of
P. aeruginosa cultures was insufficient to rescue the architecture
defect of a
rhlA mutant (data not shown). As an alternative
approach to test the ability of rhamnolipids to rescue the phenotype
of a
rhlA mutant, we monitored biofilm development in a flow
cell inoculated with a mixture of equal numbers of wild-type
PAO1 (green cells) and the
rhlA::Tn
5 mutant (red cells). As
seen in Fig.
2, this mixing experiment resulted in a biofilm
that consisted of macrocolonies made up in large part of a mixture
of wild-type and
rhlA mutant bacteria. Despite the presence
of wild-type bacteria in many macrocolonies, the resulting biofilm
is a mixture of typical wild-type architecture (comprised of
macrocolonies surrounded by open areas) and dense compact areas
where the channels were occupied by cells, a phenotype that
is reminiscent of the
rhlA mutant. These data indicate that
the presence of the wild type could only partially rescue the
biofilm architecture defect of the
rhlA mutant.
Expression of rhlA during biofilm development.
To evaluate where and when rhamnolipids are synthesized in the
biofilm, we examined the expression of the
rhlA gene during
development. Expression of
rhlA was determined indirectly by
using plasmid p
rhlA::
gfp, which harbors a transcriptional fusion
of the
rhlA promoter region to the GFP. As shown in Fig.
3,
on day 1, small microcolonies of 10 to 30 cells associated with
the early stages in biofilm development can be seen by phase-contrast
microscopy; however, no
rhlA-
gfp-dependent fluorescence was
observed at this time point. However, by day 2, larger colonies
comprised of thousands of fluorescent cells could be detected,
indicating expression of the
rhlA gene. Expression of this fusion
was found to coincide with macrocolony formation and continued
throughout biofilm development in areas where the cell density
was high. The expression of
rhlA only in macrocolonies is consistent
with the observation that rhamnolipids are not required for
the initiation of biofilm development. In control experiments,
we could observe the fluorescence of individual batch grown
planktonic, stationary-phase cells carrying the p
rhlA-
gfp plasmid
(not shown). These data demonstrate that the digital camera
used to obtain images was sufficiently sensitive to detect an
individually fluorescing bacterium.
Overproduction of rhamnolipids inhibits biofilm development.
Based on their surface-active properties, we predicted that
rhamnolipids could affect the interactions of bacteria with
surfaces and with each other. To address this hypothesis directly,
we examined the effects of rhamnolipid overexpression on the
interactions of bacteria with a surface. First, the effects
of rhamnolipids on early biofilm formation were determined by
growing bacteria under conditions leading to high-level expression
of rhamnolipids. Rhamnolipids are typically synthesized during
late-exponential or stationary phase of growth when the cell
density is high, and this production is greatly enhanced by
nutrient limitation (
10). However, it has been shown previously
that growth in a phosphate-limited complex medium induces the
production of high levels of rhamnolipids (

100 µM in planktonic
cultures) in the absence of high cell density (
17). The formation
of biofilms was observed in flow cells fed with phosphate-limited
PPGAS medium (

0.03 mM inorganic phosphate, low-phosphate conditions).
As shown in Fig.
4, when grown in low-phosphate, rhamnolipid-inducing
conditions, wild-type cells started to attach at day 1, but
by day 3 very few bacteria remained attached to the surface
of the flow cell. In contrast, the
rhlA mutant, which is unable
to produce any rhamnolipids, formed a dense biofilm on the surface
by day 3. Supplementing the PPGAS complex medium with 2.5 mM
potassium phosphate (high-phosphate conditions) restored the
ability of the wild-type strain to form a biofilm in the flow
cell (data not shown). Therefore, expressing high levels of
rhamnolipids can impede the formation of biofilms.
Rhamnolipids disrupt both cell-to-cell and cell-to-surface interactions.
The data presented above indicated that production of rhamnolipids
could help maintain the channels formed in a biofilm. How can
rhamnolipids carry out such a function? As mentioned above,
rhamnolipids are surfactants, or surface-active molecules, and
a general property of surfactants involves their ability to
alter the physical and/or chemical properties at interfaces
(
18). We hypothesized, therefore, that the rhamnolipid surfactants
could influence
P. aeruginosa cell-to-cell and/or cell-to-surface
interactions.
To test these hypotheses, purified rhamnolipids were assessed for their effects on the initiation of biofilm development by using the previously described microtiter dish assay. Purified rhamnolipid (250 µM) added to bacteria at the time of inoculation into the microtiter dishes completely blocked biofilm formation (Fig. 5). Partial inhibition of biofilm formation was observed at lower concentrations of rhamnolipid (not shown).
We also examined the effect of purified rhamnolipids on cell-to-cell
interactions.
P. aeruginosa typically forms a pellicle or raft
of cells on the surface of a liquid culture. As shown in Fig.
5B, the addition of 100 µM dirhamnolipid disrupted cell-to-cell
interactions, and this disruption occurred immediately after
the addition of the compound. Taken together, these data demonstrate
that rhamnolipids can disrupt both cell-to-cell and cell-to-surface
interactions. Interestingly, neither purified rhamnolipid nor
rhamnolipid-containing spent supernatants of
P. aeruginosa cultures
had any discernible effect on a preformed 6-day-old biofilm
(not shown). These data suggest that rhamnolipids can only interfere
with earlier stages of biofilm development.
Invasion of a preformed biofilm.
Based on the evidence that biofilm channel structure is maintained over time, we predicted that few planktonic cells invading a preformed biofilm would be capable of attaching to this community. We performed an invasion experiment by introducing GFP-tagged P. aeruginosa cells (
107 cells) into a flow cell containing a preformed mature 5-day-old biofilm, and the tagged cells were allowed to attach for 1 h under static conditions (Fig. 6a and c). After this period of attachment, flow was resumed for an additional hour to remove unattached bacteria before microscopic examination at low and high magnifications. As shown in Fig. 6b and d, very few of the invading GFP-tagged cells attached to the biofilm. These data are consistent with the hypothesis that preformed biofilms have the means, including but not necessarily limited to the production of rhamnolipids, to control the attachment of planktonic bacteria.

DISCUSSION
Our studies show that in situ production of rhamnolipid surfactants
by
P. aeruginosa cells affects biofilm architecture but that
the loss of rhamnolipid production does not appear to affect
the initial development of macrocolonies and open channels.
However, the
rhlA mutant is incapable of maintaining open channels,
eventually forming a relatively homogeneous layer of cells as
thick as, or thicker than, the wild-type biofilm (Fig.
1). Such
a role for surface-active compounds in the structuring of microbial
populations at interfaces is not unprecedented in the microbial
world. Surfactants are known to play a role in the emergence
of aerial hyphae in both fungi and the filamentous bacterium
Streptomyces coelicolor (
31,
36) and in the formation of hydrophobic
air channels in fruiting bodies of fungi (
15). In addition,
a recent study of fruiting body formation in the bacterium
Bacillus subtilis showed that a mutant (
sfp) deficient in surfactin production
formed atypical surface-associated pellicle (biofilm) structures
(
2).
How does the production of rhamnolipids maintain the open channels formed during biofilm development? At this point, the answer to this question is not clear. As has been reported, high cell density planktonic growth induces the synthesis of quorum-sensing-dependent rhamnolipid production (3, 21, 28), and similar density-dependent transcription of the RhlI-RhlR system and rhlA is also seen in biofilms (8) (Fig. 3). We propose that surfactant production may inhibit planktonic cells from attaching to the preformed biofilm. This contention is supported by the "invasion assay" shown in Fig. 6. Alternatively, rhamnolipids may cause the detachment of cells or microcolonies from the biofilm, preventing the accumulation of new biomass in the channels. These models are not mutually exclusive. Finally, our data indicate that exposing a preformed biofilm to rhamnolipids has no significant effect on established biofilm structure, suggesting that the production of surfactants by preformed macrocolonies would not necessarily cause wholesale detachment of the biofilm.
The ability to block colonization of a preformed biofilm is likely due in large part to the well-known properties of surfactants at interfaces. Surfactants have the potential to affect both cell-to-cell and cell-to-surface interactions (18), and our data support the hypothesis that rhamnolipids produced by P. aeruginosa do affect these interface interactions. We showed that purified rhamnolipids, the only characterized surfactants produced by P. aeruginosa, are capable of disrupting interactions between cells and each other and a surface. Hence, rhamnolipids are able to modulate cell-to-surface and cell-to-cell interactions. The ability of surfactants to disrupt bacterial attachment has been observed for the surfactant produced by Lactobacillus spp., known as surlactin, which blocked initial surface adhesin of uropathogenic Enterococcus faecalis, Escherichia coli, and Staphylococcus epidermidis, as well as two yeast strains (32-34). The surfactant produced by B. subtilis, called surfactin, also inhibits biofilm formation by Salmonella enterica, E. coli, and Proteus mirabilis (16). Studies in our laboratory indicate that purified P. aeruginosa rhamnolipids can block initial adherence by fluorescent pseudomonads and E. coli (M. E. Davey and G. A. O'Toole, unpublished data), suggesting that surfactants may have a broad and relatively nonspecific ability to interfere with cell-to-cell and cell-to-surface interactions. Therefore, P. aeruginosa rhamnolipid may prevent colonization not only of "self" but also of other planktonic microbes attempting to take up residence within the channels of its biofilm.
The findings presented here indicate that open-channel maintenance is not a stochastic process but represents an active process by the bacterial community that stabilizes a preferable biofilm architecture. Recent studies in P. aeruginosa suggest a role for a number of genes in the formation of biofilm architecture, indicating that a distinct set of genetic factors is required for the development of biofilm architecture in P. aeruginosa. We suggest that the production of rhamnolipid surfactants is one mechanism employed by P. aeruginosa for the active maintenance of biofilm architecture. We believe that other, as-yet-unidentified mechanisms may also contribute to the maintenance of architecture. For example, a decrease or cessation of growth in large macrocolonies may slow or stop the filling of channels between these structures. Finally, we propose that the maintenance of biofilm architecture is a previously undescribed stage in the development of P. aeruginosa biofilms.

ACKNOWLEDGMENTS
We thank Thea Norman at Microbia, Inc., for providing purified
dirhamnolipid, Urs Ochsner for the
rhlA::Tn
5 strain, Matt Parsek
for the
rhlA-gfp fusion plasmid, and John P. Connolly for computer
expertise.
This research was funded by grants from Microbia, Inc., and The Pew Charitable Trusts (to G.A.O.). G.A.O is a Pew Scholar in the Biomedical Sciences. M.E.D. was supported by an NIH training grant (5 T32 AI07519).

FOOTNOTES
* Corresponding author. Mailing address: Department of Microbiology and Immunology, Dartmouth Medical School, Rm. 202, Vail Building, North College St., Hanover, NH 03755. Phone: (603) 650-1248. Fax: (603) 650-1318. E-mail:
georgeo{at}dartmouth.edu.

For a commentary on this article, see page 699 in this issue. 

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Journal of Bacteriology, February 2003, p. 1027-1036, Vol. 185, No. 3
0021-9193/03/$08.00+0 DOI: 10.1128/JB.185.3.1027-1036.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
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