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Journal of Bacteriology, April 2003, p. 2236-2242, Vol. 185, No. 7
0021-9193/03/$08.00+0 DOI: 10.1128/JB.185.7.2236-2242.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Microbial Adhesion Group, BioCentrum-DTU, Technical University of Denmark, DK-2800 Lyngby, Denmark
Received 2 October 2002/ Accepted 26 December 2002
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The oxidative stress response in Escherichia coli is orchestrated by two master control systems encoded by the oxyR and soxRS genes. The OxyR arm of the oxidative stress response primarily senses peroxides (31) and affects a regulon of more than 30 genes that are either activated or repressed by OxyR. According to the prototypic two-state model, OxyR can exist in two principal forms, reduced and oxidized, due to reversible disulfide bond formation (31, 32). The two forms have different conformations and recognize different DNA motifs (27). Hydrogen peroxide can act directly with OxyR, generating an oxidized cysteine derivative, which is then presumably able to react and form a disulfide bridge. Alternatively, OxyR can be oxidized independently of peroxide exposure by disulfide bridge formation due to an altered redox state in the cytoplasm, reflected by a shift in the glutathione/glutathione disulfide ratio, i.e., disulfide stress (1). Only the oxidized form of OxyR (OxyROx) can activate transcription (32). Indeed, OxyROx activates several genes whose products have obvious roles in eliminating reactive oxygen compounds, e.g., katG and aphCF, encoding catalase and alkyl hydroperoxide reductase, respectively. Although OxyROx generally acts as an activator, it can repress transcription; for example, it represses gntP, uxuAB, and fhuF (33, 34).
When the cell is not subjected to either oxidative or disulfide stress, a reduced form of OxyR (OxyRRed) is thought to be dominant (1, 31). According to the available literature, OxyRRed, apart from repressing the transcription of oxyR itself, seems to repress only one other indigenous gene in E. coli, i.e., flu (the mom gene of bacteriophage Mu is not normally present). The flu gene (also called agn43), mapping at 43 min on the E. coli chromosome, encodes the surface protein antigen 43 (Ag43), which induces fluffing of cells, a characteristic which led to its original flu designation (7). Ag43 is present in
50,000 copies per cell (20). The expression is phase variable, with switching rates of
10-3 per cell per generation under normal growth conditions due to the concerted action of the Dam methyltransferase (positive regulation) and OxyR (negative regulation) (9, 13, 30). The flu promoter region contains three GATC sites, which overlap a recognition sequence for OxyR (9, 10, 13). When the GATC sites are methylated, OxyR cannot bind; conversely, bound OxyR prevents methylation (29).
Ag43 is a member of the autotransporter family of excreted proteins; it is processed into a mature form consisting of two subunits,
and ß (10, 12, 13). The
subunit reaches the cell exterior with assistance from the ß subunit and remains attached to the cell surface, presumably through a noncovalent interaction with the ß subunit. Ag43 is a self-recognizing adhesin and has been found to induce characteristic surface properties on host cells, such as autoaggregation and a frizzy colony morphology (10, 11). Ag43 is found in most E. coli strains and can actually be expressed by a broad spectrum of gram-negative bacteria (15, 16). A key function of Ag43 seems to be the promotion of bacterial biofilm formation due to its excellent cell-to-cell aggregation characteristics (16, 17, 23). Previous studies suggested that the reduced, but not the oxidized, form of OxyR is an efficient repressor of the flu gene (9, 13, 24). However, the precise roles of the redox states of OxyR in controlling the flu promoter have not been elucidated. Here we study such aspects.
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View this table: [in a new window] |
TABLE 1. Bacterial strains and plasmids
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DNA manipulations. Plasmid DNA was isolated by using a QIAprep spin miniprep kit (Qiagen). Restriction endonucleases were used according to the manufacturer's specifications (Biolabs). PCRs were carried out as previously described (25). Amplified products were sequenced by using an ABI PRISM BigDye terminator cycle sequencing ready reaction kit (PE Applied Biosystems) to ensure the fidelity of the PCRs. Samples were run on a Perkin-Elmer ABI PRISM 310 genetic analyzer (PE Applied Biosystems) as described in the manufacturer's specifications.
Colony morphology. Colony morphology was assayed by using a Carl Zeiss Axioplan epifluorescence microscope, and digital images were captured with a 12-bit cooled slow-scan charge-coupled device camera (KAF 1400 chip; Photometrics, Tucson, Ariz.) controlled by PMIS software (Photometrics).
Western immunoblotting.
Samples were subjected to sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride microporous membrane filters as described previously (25). Serum raised against the
subunit of Ag43 was used as the primary antibody, and peroxidase-conjugated anti-rabbit serum was used as the secondary antibody.
Hydrogen peroxide sensitivity. Resistance to hydrogen peroxide was assayed by measurement of zones of inhibition. A suspension of cells from an overnight culture was added to 20 ml of overlay agar, and the mixture was poured into a petri dish and allowed to dry. Five microliters of 30% H2O2 was added to the center of the plate and allowed to adsorb. Zones of growth inhibition were measured after overnight growth at 37°C.
The ability of Ag43-mediated cell aggregation to protect against hydrogen peroxide killing was assessed according to the following protocol. Cells from overnight cultures were washed and resuspended in phosphate-buffered saline to a concentration of approximately 109 cells per ml. For each strain, 100-µl aliquots were incubated at room temperature for 15 min in a microtiter plate. Then, 100 µl of an H2O2 solution (starting at 2.2 M and serially diluted to 0.03 M) was added, and the mixture was incubated for 15 min at room temperature. The cells were washed and then plated in a dilution series to determine the total number of surviving cells.
DTT-induced inhibition of Ag43 expression.
An overnight culture of E. coli strain MS428 was diluted and grown in 100 ml of LB medium with gentle shaking at 37°C. Aliquots (100 µl) of either 1 or 2 M dithiothreitol (DTT) were added every 15 min starting at an optical density at 600 nm (OD600) of 0.1. At an OD600 of 1.0, 10 ml of culture was harvested and washed in phosphate-buffered saline. The
subunit of Ag43 was detached by incubating the cells for 4 min at 60°C. Cells were removed by centrifugation, and the protein in the supernatant was precipitated with 75% acetone. Samples were subjected to Western blotting.
Biofilm assay. Biofilm formation on plastic surfaces was monitored by using 96-well microtiter plates as previously described (17), the only difference being that arabinose was added for promoter induction.
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FIG. 1. H2O2 response profiles monitored by adding identical aliquots of H2O2 to the center of plates incubated with oxyR strain MGJ1 harboring various plasmids. (A to D) The plasmids were pBAD/myc-HisA (A), pMGJ1 (wild-type OxyR) (B), pMAS141 (OxyRRed,C199S) (C), and pMAS142 (OxyROx,H198R) (D). Note the presence of bubbles in MGJ1(pMAS142) (D), likely due to enhanced catalase activity resulting from priming of the oxidative stress response regulon. (E) Block diagram showing the mean sizes of the zones of inhibition and standard deviations from eight independent experiments. WT, wild type.
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oxyR, wild-type oxyR, oxyRRed,C199S, and oxyROx,H198R. In addition, bands of equal intensities and migrating at the predicted molecular mass of OxyR (34 kDa) were present in all OxyR-expressing strains but not in the
oxyR mutant strain, suggesting that the mutations did not influence the level of OxyR. These observations led us to believe that our oxyR variants encoded type-specific functional gene products and could be used as tools to monitor Ag43 expression.
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FIG. 2. Coomassie brilliant blue-stained SDS-polyacrylamide gel (left panel) and Western immunoblot (right panel) of cell lysates of oxyR strain MGJ1 harboring various plasmids. Lane 1, pBAD/myc-HisA; lane 2, pMGJ1 (wild-type OxyR); lane 3, pMAS141 (OxyRRed,C199S); lane 4, pMAS142 (OxyROx,H198R). Western blotting was performed with a polyclonal serum raised against the subunit of Ag43. The position of the Ag43 -subunit protein is indicated. Molecular weight size markers (in thousands) are shown at the left.
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-fragment-specific antiserum revealed a band migrating at the expected apparent molecular weight for the Ag43
fragment in lysates from
oxyR and oxyROx,H198R cells but not from oxyRRed,C199S cells; a faint band was observed in a wild-type background (Fig. 2). One of the hallmarks of Ag43 expression is the ability to cause autoaggregation of cells with subsequent settling in liquid media. When the settling profiles of the four oxyR variants were monitored, it appeared that only hosts with oxyRRed,C199S or the wild-type oxyR allele stayed in suspension, whereas the
oxyR and oxyROx,H198R hosts flocculated (Fig. 3). These results suggest that only the reduced form of OxyR is able to repress the flu gene.
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FIG. 3. Settling profiles of strain MGJ1 harboring plasmids pBAD/myc-HisA (triangles), pMAS141 (OxyRRed,C199S) (crosses), pMGJ1 (wild-type OxyR) (squares), and pMAS142 (OxyROx,H198R) (circles).
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FIG. 4. Ag43 expression and associated protection against H2O2. (A) Colony morphology of strains examined by phase-contrast microscopy after overnight growth on solid media with 0.2% arabinose. Colonies were photographed at the same magnification. Panel 1, E. coli strain MGJ1 containing plasmid pMAS141 (OxyRRed,C199S); panel 2, E. coli strain MGJ1 containing plasmid pMAS142 (OxyROx,H198R). (B) Phase-contrast microscopy of cells. Panel 1, E. coli strain MS528 (fim flu) containing the vector control (pBR322); panel 2, E. coli strain MS528 containing the flu-carrying plasmid pHHA147. (C) Ag43-mediated cell aggregation enhances the ability to survive lethal doses of hydrogen peroxide. Approximately 109 cells of each strain were exposed to a series of H2O2 concentrations and plated on solid medium to obtain viable counts. Shown are the numbers of surviving cells after exposure to 0.275 M H2O2. Two strain sets were used, each differing only in their Ag43 expression. The first set included E. coli strain MS528 containing the vector control and plasmid pHHA147 (flu+); the second set included a non-Ag43-expressing variant (BD1511) and an Ag43-expressing variant (BD1512) of E. coli strain BD1428. Error bars indicate standard deviations.
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fim strain, MS428. Since large doses of DTT inhibit cell growth, we modified our experimental conditions to not be growth inhibitory by pulse-wise addition of DTT over several generations (Fig. 5). The DTT-treated cultures and an untreated control were subsequently analyzed by Western blotting (Fig. 5). The data suggest that the addition of DTT reduces the expression of Ag43, likely by driving the cellular pool of OxyR into a more reduced state. These data corroborate the data obtained with the mutant form of OxyR and support the notion that OxyR control of flu is redox dependent.
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FIG. 5. Influence of DTT on cell growth and Ag43 expression. (A) E. coli MG1655 fim grown in LB medium (squares) and the same strain grown in LB medium but pulsed at regular 15-min intervals with 100 µl of either 1.0 M (triangles) or 2.0 M (circles) DTT. (B) Western blot of concentrated heat-extracted cell surface proteins obtained from cultures grown to an OD600 of 1.0. Lane 1, E. coli MG1655 fim; lane 2, E. coli MG1655 fim grown with 100-µl pulses of 1.0 M DTT every 15 min; lane 3, E. coli MG1655 fim grown with 100-µl pulses of 2.0 M DTT every 15 min. Western blotting was performed with a polyclonal serum raised against the subunit of Ag43. The position of the Ag43 -subunit protein is indicated.
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Biofilm-forming ability correlates with the redox status of OxyR. By virtue of its excellent cell-aggregating properties, Ag43 expression enhances bacterial biofilm formation (6, 16, 17). In keeping with the notion that the redox status of OxyR determines its ability to repress Ag43 expression, we investigated the biofilm-forming ability of MGJ1 cells harboring different versions of OxyR. From the results, it became obvious that OxyRRed,C199S hosts were significantly impeded in biofilm formation compared to their OxyROx,H198R counterparts (Fig. 6). Clearly, these results should be attributed to the fact that in OxyRRed,C199S cells, Ag43 expression was virtually abolished (Fig. 2). It appears that Ag43-assisted biofilm formation depends on cellular redox status.
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FIG. 6. Effect of OxyR redox status on biofilm formation by MGJ1 hosts containing various plasmids. Plasmids were as follows, from left to right: pBAD/myc-HisA (vector control), pMGJ1 (wild-type OxyR), pMAS141 (OxyRRed,C199S), and pMAS142 (OxyROx,H198R). Strains were grown on polystyrene microtiter plates. Adherent cells were stained with 0.1% crystal violet. Shown is the quantification of results after the determination of A600 readings. Error bars indicate standard deviations.
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The reduced form of OxyR, OxyR-SH, has been proposed to be dominant under normal growth conditions, i.e., when the cell is not subjected to oxidative or disulfide stress. The results presented here suggest that the flu gene is repressed by the reduced form of OxyR. Several lines of evidence support this conclusion. First, OxyRRed,C199S cells do not settle from standing cultures, whereas OxyROx,H198R cells settle rapidly, like cells having no oxyR gene (indicative of no repression). Second, OxyROx,H198R cells form frizzy colonies, contrary to OxyRred,C199S cells, which form nonfrizzy colonies. Third, no Ag43 can be detected by Western blotting of lysates from OxyRRed,C199S hosts, but Ag43 can be readily detected in lysates from OxyROx,H198R hosts. Finally, pulse-wise addition of a simple reducing agent, DTT, to Ag43-expressing cells seems to suppress expression (Fig. 5). It was previously demonstrated that the addition of DTT to cells causes skewing of the colony morphology toward the form 3 nonfrizzy morphotype (24). Taken together, these results suggest that only the reduced form is capable of repressing the flu gene and that it does so very tightly.
Interestingly, the reduced form of OxyR has been shown to be dominant in normal growing cells, because the redox potential of OxyR is more positive than the redox potential of the resting cytoplasm by
85 mV (1, 2, 31). The addition of a reducing agent such as DTT should not significantly alter the redox status of the OxyR pool and therefore would not be expected to repress flu any further. However, we observed a dramatic difference (Fig. 5). The common view of redox regulation as a simple on-off switch may be too simplistic, according to recent work by Kim et al. (14). They proved that several stable forms of OxyR, all with modifications of C199, occur in vivo. These oxidized forms of OxyR, such as, for example, sulfenic acid (OxyR-S-OH) and glutathione disulfide (OxyR-S-SG), have dissimilar conformations and different DNA affinities (14). This family of OxyR derivatives would be well adapted to showing a graded response to changes in cellular redox status. In view of these facts, it is possible that the DTT-induced repression of Ag43 expression that we observed occurred because the addition of the reducing agent caused skewing of the balance within the cellular OxyR family toward a form, presumably OxyR-SH, which represses the flu gene efficiently. Further work is required to clarify the specific molecular forms of OxyR that are present or dominant under different growth conditions.
The expression of Ag43 is phase variable due to the concerted action of the Dam methyltransferase and OxyR (9, 13, 30). The flu promoter region contains three GATC sites, which overlap a recognition sequence for OxyR (9, 10, 13). When the GATC sites are methylated, OxyR cannot bind; conversely, bound OxyR prevents methylation (29). On the chromosome, the methylation of a newly synthesized GATC target normally takes place within a few minutes (4). When the replication fork has passed the flu promoter region, the race is on between Dam and OxyR to either activate or repress the gene. It is tempting to speculate that a modest increase in the proportion of OxyR in the repression-compatible form (reduced) as a result of the addition of DTT would, over a few generations, change the balance toward a population with fewer Ag43-expressing cells.
What are the biological implications of these findings? A corollary would be that since Ag43 expression seems to be repressed under strongly reducing conditions, it should be less so under oxidizing conditions. This idea prompted us to investigate the possibility of whether Ag43 expression would confer a measure of protection against oxidizing agents. According to this tenet, the tight packing of cells in cellular aggregates connected with Ag43 expression could provide a mechanism for reducing local oxygen concentrations, thereby protecting the cells from damage caused by oxidizing agents. We found strong support for this hypothesis in the fact that Ag43 expression and the ensuing cell-to-cell aggregation were observed to be concomitant with a high degree of protection against H2O2 killing (Fig. 4). Curiously, we found that the addition of sublethal concentrations of H2O2 to cells did not result in any significant increase in Ag43 expression. Protection against H2O2 killing by Ag43-mediated cell aggregation therefore seems to be a side effect of Ag43 expression; the expression itself seems not to be caused directly by H2O2-induced stress. An explanation for this phenomenon could be that only a minor fraction of the OxyR pool is oxidized under such conditions; this amount is sufficient to activate the oxidative stress response, whereupon the cellular redox status returns to normal within a few minutes (2). However, more than enough OxyR likely remains in a reduced state compatible with the repression of flu.
Several investigators have demonstrated that Ag43 expression confers excellent biofilm-forming properties (6, 16, 17). Since the OxyRRed,C199S form virtually abolishes Ag43 expression, we surmised that cells harboring this version would be significantly handicapped in biofilm formation; this turned out to be the case. Ag43 is expressed in a wide range of E. coli strains. Interestingly, it is expressed by many pathogenic strains. Thus, a survey of enteropathogenic and urinary tract infection E. coli strains showed that 77 and 60%, respectively, of these strains were capable of Ag43 expression (21). Although E. coli K-12 has only one copy of the flu gene, it appears that the situation for wild-type strains is more complex and that two or more copies are present in enteropathogenic E. coli strains and some enterohemorrhagic E. coli strains (22, 28). Data available from databases indicate that multiple flu genes have similar promoter regions, suggesting that control is similar to that of the flu gene in E. coli K-12. In view of the fact that flu is found in so many pathogenic strains, the findings reported here could be important for understanding how bacteria behave during infection. Biofilms are highly complex, structurally organized sessile communities. Numerous bacterial infections occur as biofilms. It has been shown that such communities are highly resistant to antimicrobial agents (5). Here we have demonstrated that a simpler form of cooperative behavior, namely, Ag43-induced bacterial clumping, can also be a highly efficient defense mechanism.
This work was supported by the Danish Technical Research Council (grant 26-02-0183) and the Natural Sciences Research Council (grant 21-01-0296).
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