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Journal of Bacteriology, April 2003, p. 2243-2250, Vol. 185, No. 7
0021-9193/03/$08.00+0 DOI: 10.1128/JB.185.7.2243-2250.2003
Copyright © 2003, American Society for Microbiology. All Rights Reserved.
Division of Biological Sciences, University of California at San Diego, La Jolla, California 92093-0116,1 Department of Microbiology and Immunology, Faculty of Pharmacy, Ain Shams University, Abbassia, Cairo, Egypt2
Received 21 October 2002/ Accepted 16 January 2003
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-helical segment (12 TMS) transporter, an enzyme IIB-like protein and an enzyme IIA-like protein of the phosphotransferase system (PTS), respectively. We show that all three proteins as well as the energy-coupling PTS proteins, enzyme I and HPr, are required for the anaerobic utilization and uptake of L-ascorbate in vivo and its phosphoenolpyruvate-dependent phosphorylation in vitro. The transporter exhibits an apparent Km for L-ascorbate of 9 µM and is highly specific. The sgaTBA genes are regulated at the transcriptional level by the yjfQ gene product, as well as by Crp and Fnr. The yjfR gene product is essential for L-ascorbate utilization and probably encodes a cytoplasmic L-ascorbate 6-phosphate lactonase. We conclude that SgaT represents a novel prototypical enzyme IIC that functions with SgaA and SgaB to allow phosphoryl transfer from HPr(his-P) to L-ascorbate via the phosphoryl transfer pathway:
PEP
enzyme I-P
HPr-P
IIA-
IIB-
L-ascorbate-6-P. |
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FIG. 1. The E. coli sga operon showing the gene names (above the genes, indicated by arrows) and gene lengths (number of base pairs within the arrows). The arrows, with lengths proportional to gene size, indicate the direction of transcription. The (putative) functions of the gene products are indicated below the arrows. The numbers in parentheses indicate the numbers of base pairs in the intergenic regions.
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Recently, Yew and Gerlt (31) showed that the anaerobic utilization of L-ascorbate is dependent on three enzymes encoded downstream of sgaTBA within the sga operon (Fig. 1). These enzymes catalyze the conversion of the phosphorylated hydrolytic product of L-ascorbate, 3-keto-L-gulonate-6-P, to D-xylulose-5-P. They proposed that L-ascorbate or 3-keto-L-gulonate is phosphorylated by the PTS and that, subsequently, 3-keto-L-gulonate-6-phosphate decarboxylase (SgaH; renamed UlaD) produces L-xylulose-5-P (30), which is then converted to D-xylulose-5-P in a two-step process catalyzed by SgaU (renamed UlaE) and SgaE (renamed UlaF). Involvement of the putative permease SgaT (renamed UlaA by Yew and Gerlt [31]) and the PTS protein homologues SgaA (renamed UlaC) and SgaB (renamed UlaB) was not examined. Nor was it established whether L-ascorbate is hydrolyzed extracellularly or intracellularly. Consequently, it was not clear what the transported substrate should be.
Prior to the report of Yew and Gerlt (31), we had been taking a functional genomic approach to characterize the sgaTBA gene cluster. We had knocked out the three genes individually and together, but a PTS-related phenotype was not apparent. Using GN Biolog plates (2), we found that the sgaTBA deletion mutant seemed to oxidize L-proline less efficiently than the isogenic wild type, but used glycyl-L-glutamate somewhat better. Ascorbate was not included in any of the 96-well Biolog plates (2). The report of Yew and Gerlt (31) led us to test our mutants for defects in L-ascorbate utilization, transport, and phosphorylation. The results are presented in this report.
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TABLE 1. Strains and plasmids used in this study
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msaier/supmat). These primers are available upon request. The PCR products were purified with a Qiagen kit, treated with DpnI, and repurified by electrophoresis. The km gene was transformed into BW25113-competent cells by electroporation (Gene Pulser; pulse controller at 200
, capacitance at 250 µF, and voltage at 25 kV). After electroporation, the cells were grown with shaking in 1 ml of SOC medium (24) at 37°C for 1 h, and the cultures were plated onto Luria-Bertani (LB) agar containing 25 µg of kanamycin per ml. The Kmr transformants were purified on new kanamycin-LB plates. The mutants in which the target genes were replaced by the km gene were verified by PCR with the pairs of primers listed in Table S1 on our web site. To delete the km gene from the chromosome, pKD46 was removed from the cells by growing the bacteria at 37°C, and then pCP20, expressing the FLP recombinase, was introduced by transformation. The transformants containing pCP20 were grown overnight with shaking at 42°C, and the culture was plated on LB agar without antibiotics. Colonies were tested for sensitivity to kanamycin and ampicillin.
Growth conditions.
Bacteria were cultured in LB complex medium or M9 minimal medium at 37°C (24). When appropriate, ampicillin and/or kanamycin was added to the medium at 100 and 25 µg/ml, respectively. To measure growth on L-ascorbate, bacteria were grown anaerobically in medium containing L-ascorbate as described by Yew and Gerlt (31). Briefly, E. coli strains were grown overnight on LB agar, and the cells were suspended in M9 salts medium. The OD600 of the cell suspension was adjusted to 1.0, and 100-µl aliquots were inoculated into 10-ml screw-cap culture tubes (Fischer Scientific) that were filled to the top with M9 medium plus one or more carbon sources, each at a concentration of 20 mM unless otherwise specified. The tubes were capped, sealed with parafilm, and then incubated at 37°C. The cell density during growth was measured with a Klett photoelectric colorimeter. To culture strains JM101 (wild type) and PB11 (
ptsHIcrr) in M9 medium, thiamine was added to the medium to a final concentration of 40 µg/liter. We tested the effect of cyclic AMP on the growth of strain PB11 by using L-ascorbate as the sole source of carbon, with neutralized cyclic AMP added to the growth medium at concentrations between 0.25 and 2.5 mM. To culture bacterial strains containing plasmid pBAD24 with or without a cloned gene, ampicillin and 2 mM L-arabinose were added to the medium.
DNA manipulations and gene cloning. Standard methods were used for chromosomal DNA isolation, restriction enzyme digestion, agarose gel electrophoresis, ligation, and transformation (24). Plasmids were isolated by using spin miniprep kits (Qiagen, Chatsworth, Calif.), and PCR products were purified with Qiaquick purification kits (Qiagen). For gene cloning, the sgaTBA, sgaT, sgaB, sgaA, yjfQ, and yjfR genes were amplified from chromosomal DNA of wild-type E. coli strain BW25113 by PCR. The primers used for gene amplification are listed in the supplementary table on our web site, Table S2 (restriction sites XbaI and HindIII are underlined). The PCR products were purified, treated with XbaI and HindIII, and then cloned into the XbaI and HindIII sites of pBAD24.
In vivo transport assays. Transport studies were conducted essentially as described by Djordjevic et al. (6). Cells grown anaerobically in M9 medium were harvested during the logarithmic phase, washed three times with Tris-maleate (TM) buffer (pH 7.0), and resuspended in the same buffer containing 0.5% D,L-lactate as a source of energy. Uptake was conducted with cell suspensions (1 ml; OD600 = 2.0) in 1.5-ml microcentrifuge tubes with 30 µM L-ascorbate (5 µCi/µmol) unless otherwise noted. Aliquots (100 µl) were periodically removed, filtered through 0.45-µm-pore-diameter Millipore filters, washed three times with TM buffer, and dried. Radioactivity on the filters was measured by scintillation counting with 10 ml of Bio-safe NA fluid (Research Products Int. Corp., Mt. Prospect, Ill.). Values are expressed as picomoles of [14C]L-ascorbate taken up per milligram (dry weight) of cells (see Fig. 7) or as micromoles of [14C]L-ascorbate taken up per gram (dry weight) of cells per hour (see Fig. 8).
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FIG. 7. Uptake of [14C]L-ascorbate by wild-type cells (diamonds) and the yjfQ mutant (squares). Solid symbols represent induced conditions (growth with 20 mM L-ascorbate), and open symbols represent uninduced conditions (growth with 20 mM D-glucitol).
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FIG. 8. Uptake of [14C]L-ascorbate by the yjfR mutant as a function of L-ascorbate concentration (1 to 300 µM concentration range). The uptake experiment was conducted as described in Materials and Methods after anaerobic growth in 20 mM L-ascorbate plus 20 mM D-glucitol. The inset shows a double-reciprocal plot of the data.
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For phosphatase treatment, the membrane pellet was removed from the assay mix by centrifugation after completion of the phosphorylation reaction, and 25 U of either acid phosphatase or alkaline phosphatase was added prior to the addition CaCl2. The pH was adjusted to 4.8 (acid phosphatase) or 9.8 (alkaline phosphatase) before addition of phosphatase, and the preparation was incubated for an additional 40 min before neutralization and addition of 5 M CaCl2 to terminate the reaction and quantitate the pelletable radioactive phosphate ester. Both acid and alkaline phosphatase reduced the radioactive phosphorylated product formed and recovered in the CaCl2 precipitate to background levels (<0.5% of the activity observed for the wild-type enzyme without phosphatase treatment). Protein concentrations were determined with the Bio-Rad colorimetric protein assay kit (catalog no. 500-0006) with bovine serum albumin as the standard protein.
Materials. 1-[14C]L-ascorbate was purchased from Perkin-Elmer Life Sciences, Inc., and [14C]mannitol and [14C]L-proline were purchased from ICN Pharmaceuticals, Inc. (Irvine, Calif.). 2-Keto-L-gulonate and 2,5-diketo-L-gulonate were generously provided by Fernando Valle of Genencor International, Inc., Palo Alto, Calif. Acid and alkaline phosphatases (catalog no. P1146 and P6772, respectively), carbonyl cyanide-m-chlorophenylhydrazone (catalog no. C2759), Na arsenate (catalog no. A6756), and all other nonradioactive compounds were purchased from the Sigma Chemical Corp unless otherwise stated. All compounds were of the highest purity available commercially.
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FIG. 2. Growth of E. coli strains on L-ascorbate. Growth was conducted in minimal medium M9 (24) under anaerobic conditions (see Materials and Methods) (A) Growth of wild-type E. coli as a function of time at various L-ascorbate concentrations. , 10 mM; , 20 mM; , 30 mM; , 50 mM. (B) Growth of wild-type and mutant strains in 20 mM L-ascorbate. , wild type; , sgaTBA; , sgaT; , sgaB; X, sgaA.
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In order to investigate the dependency of L-ascorbate utilization on the PTS energy-coupling enzymes, enzyme I and HPr, two isogenic strains, a wild-type strain, and a strain with the pts operon deleted (
ptsHIcrr::km) (Table 1), were examined. The
pts strain could not utilize L-ascorbate, although the isogenic wild-type strain could (data not shown; see Fig. S2 on our web site). Addition of cyclic AMP to the growth medium at a concentration of 0.25, 0.5, 1.0, or 2.5 mM did not cause detectable growth of the mutant. These results show that the absence of the energy-coupling enzymes of the PTS prevented L-ascorbate utilization, and the exogenous addition of cyclic AMP did not restore growth. These observations suggest that enzyme I and HPr play a primary role in L-ascorbate utilization rather than a secondary role due to a regulatory effect on adenylate cyclase activity (20).
In vivo transport studies. Transport studies were conducted with [14C]L-ascorbate as the radioactive substrate and under the conditions essentially described by Djordjevic et al. (6) (see Materials and Methods). When the sole source of carbon for growth was 20 mM L-ascorbate, uptake of the radioactive substrate was much greater than when cells were grown in glucose-containing medium (Fig. 3A). This fact suggests that the sgaTBA genes are inducible by the presence of L-ascorbate. When both carbon compounds were present in the growth medium, uptake was reduced by 40% (Fig. 3A). We therefore examined the mutants with the sgaTBA gene cluster or any one of these three sga genes deleted. Transport was reduced to negligible values, regardless of which mutation had been introduced (Fig. 3B). Since each deletion mutation is an in-frame deletion, and growth on L-ascorbate was restored by complementation with plasmid pBAD24-sgaTBA or with the plasmid bearing the deleted gene (described above), it can be concluded that to observe L-ascorbate uptake, the products of all three genes are required.
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FIG. 3. Uptake of [14C]L-ascorbate. In panel A, cells were grown anaerobically in medium M9 plus 20 mM L-ascorbate ( ), 20 mM glucose ( ), or 20 mM L-ascorbate plus 20 mM glucose ( ). In panel B, the cells were grown in 20 mM L-ascorbate plus 20 mM glucose. , wild type; , sgaTBA; , sgaT; *, sgaB; X, sgaA. Values are expressed as picomoles of [14C]L-ascorbate retained by the cells per milligram (dry weight).
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Uptake of [14C]L-ascorbate was examined in the presence of arsenate, which preferentially blocks ATP- or PEP-dependent uptake, and carbonyl cyanide m-chlorophenylhydrazone (CCCP), which preferentially blocks proton or sodium motive force-dependent uptake. As controls, uptake of [14C]mannitol (PEP dependent) and [14C]proline (sodium motive force dependent) was studied (13, 14, 16). With the ratio of the concentrations of arsenate and CCCP at 4,000 (i.e., 1 µM CCCP and 4 mM arsenate or 5 µM CCCP and 20 mM arsenate), proline uptake was always more strongly inhibited by CCCP, while mannitol uptake was always more strongly inhibited by arsenate. Inhibition of L-ascorbate uptake generally followed that of mannitol uptake, being stronger in the presence of arsenate than of CCCP (data not shown). These preliminary results provided the first evidence that a chemical form of energy rather than a chemiosmotic form of energy is coupled to L-ascorbate uptake. This conclusion was substantiated by the in vitro phosphorylation studies reported below.
The isogenic pair of E. coli strains lacking or possessing an intact pts operon was examined for L-ascorbate uptake following growth in medium containing L-ascorbate (20 mM) plus D-glucitol (20 mM). No uptake was observed for the mutant, although uptake was observed for the wild-type strain (data not shown) (see Fig. S3 on our web site).
In vitro phosphorylation studies.
Phosphorylation of [14C]L-ascorbate was examined by using crude extracts enriched for the pelleted membrane fraction as described in Materials and Methods. The results are presented in Fig. 4. A crude enzyme preparation from the wild-type strain (BW25113) exhibited substantial activity. The phosphorylated product was completely (>99%) lost (converted to a nonphosphorylated product) by addition of acid or alkaline phosphatase to the assay mixture after phosphoryl transfer from PEP to [14C]L-ascorbate had occurred (see Materials and Methods). This result shows that the radioactive product is a phosphate ester. Minimal activity was observed when PEP was omitted from the assay mix or when the enzyme extract was derived from the
sgaTBA mutant or any one of the single gene mutants (sgaT, sgaB, or sgaA) (Fig. 4). Increasing the PEP concentration from 10 mM to 20 mM increased phosphorylation activity observed with the wild-type extract by 15% (Fig. 4). These results show that the reaction is PEP dependent and that the phosphorylation activity observed for the wild-type strain is dependent on all three sgaTBA gene products. On the basis of both the in vivo transport studies reported above and the in vitro phosphorylation studies shown in Fig. 4, we conclude that SgaTBA comprises an enzyme II complex capable of phosphorylating L-ascorbate.
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FIG. 4. In vitro phosphorylation of [14C]L-ascorbate using PEP as the phosphoryl donor. The experiment was conducted as described in Materials and Methods. The addition of acid or alkaline phosphatase following assay of the wild-type extract for [14C]L-ascorbate phosphorylation resulted in the complete loss of activity, and the sgaTBA and single gene mutants exhibited greatly depressed activity as shown. The values are expressed as picomoles of L-ascorbate phosphorylated per milligram of protein per hour.
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yjfQ mutation allowed more rapid utilization of L-ascorbate and substantially reduced the lag phase (Fig. 5A). (ii) This mutation also allowed growth of the cells on L-ascorbate under microaerophilic conditions, conditions under which the wild-type cells could not grow (Fig. 5B). (iii) Inclusion of a plasmid (pBAD24-yjfQ) overexpressing the yjfQ gene in both the wild-type and
yjfQ strains resulted in greatly depressed growth on L-ascorbate (Fig. 6). (iv) The yjfQ mutant exhibited enhanced uptake of [14C]L-ascorbate following growth in the presence of L-ascorbate or D-glucitol as the sole carbon source (Fig. 7). These results show that YjfQ is a repressor of the sga operon and that it influences growth under microaerophilic conditions. These results agree with and extend the results of Campos et al. (3).
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FIG. 5. Growth of isogenic wild-type and yjfQ deletion mutant strains under anaerobic (A) and microaerophilic (B) conditions. Growth in both cases was conducted with medium M9 plus 20 mM L-ascorbate. Anaerobic conditions (A) were as described under Materials and Methods. Microaerophilic conditions (B) resulted from the use of a loosely capped 16-mm-diameter tube containing 8 ml of medium with cells grown at 37°C without shaking. Aliquots were periodically removed for determination of the A600. , wild type; , yjfQ.
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FIG. 6. Effect of a yjfQ deletion mutation and of yjfQ overexpression on L-ascorbate utilization. Anaerobic growth was conducted with 20 mM L-ascorbate plus 100 µg of ampicillin per ml as described in Materials and Methods. The following strains were used: wild type plus pBAD24 ( ) and yjfQ mutant plus pBAD24 ( ) in panel A and wild type plus pBAD24-yjfQ ( ) and yjfQ plus pBAD24-yjfQ ( ) in panel B.
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Essentiality of the yjfR gene product for L-ascorbate utilization. The yjfR gene, which encodes a distant homologue of a metal-dependent hydrolase, was cloned into pBAD24, and the chromosomal gene was deleted. The deletion strain was then compared with the wild-type strain and the wild-type strain overexpressing yjfR on the pBAD24 plasmid. The results were as follows. (i) The null yjfR mutant could not grow with L-ascorbate as the sole source of carbon (data not shown; see Fig. S7 on our web site). (ii) Exposure of L-ascorbate to acid (pH 2) or alkaline (pH 12) conditions for 12 h at 55°C did not promote growth (data not shown). (iii) The overexpressing strain grew better than the wild-type strain with an increased rate and increased extent of growth (20% increase of both) (data not shown; see Fig. S8 on our web site). (iv) The yjfR mutant appeared to take up [14C]L-ascorbate at a much greater rate than the wild type, possibly because metabolism of the cytoplasmic radioactive product was prevented. (v) The transport Km was depressed about twofold relative to the wild-type strain (see next section). (vi) Extracts containing YjfR could not hydrolyze L-ascorbate to 3-keto-L-gulonate (W. S. Yew, Z. Zhang, M. H. Saier, Jr., and J. Gert, unpublished results). (vii) No N-terminal signal sequence targeting YjfR to the periplasm could be identified. These results suggest that YjfR is a cytoplasmic L-ascorbate-6-phosphate lactonase, which is essential for L-ascorbate utilization.
Affinity of the SgaTBA permease for L-ascorbate. The uptake of L-ascorbate was studied as a function of L-ascorbate concentration both in the wild-type strain and in the yjfR mutant. The results for the yjfR mutant are shown in Fig. 8. The Km value calculated from the plot was 9 µM, while the Vmax was 1 µmol/g (dry weight) of cells per hour (see insert to Fig. 8). When the corresponding data for the wild-type strain were analyzed, a value of 18 µM was obtained for the Km, and the Vmax was much lower (data not shown; see Fig. S9 on our web site). Since uptake in the wild-type strain represents a sum of transport, metabolism, and product excretion, the latter value is not likely to reflect the transport process alone. We suggest that the most reliable Km value for L-ascorbate uptake by the SgaTBA PTS permease is 9 µM.
Inhibitory effects of L-ascorbate analogues and various sugars. We tested the effects of L-ascorbate; the two L-ascorbate analogues, 2-ketogulonate and 2,5-diketogulonate; as well as 16 hexoses, pentoses, hexitols, and pentitols for inhibition of L-ascorbate uptake with the radioactive substrate present at a concentration of 50 µM (the wild-type strain) or 20 µM (the yjfR mutant strain), and the inhibitory compound was present in 10-fold excess (500 or 200 µM, respectively). Nonradioactive L-ascorbate itself inhibited 72% ± 5%. All other analogues inhibited <15%, except for D-arabitol, which inhibited 34% ± 8% (data not shown; see Table S3 on our web site). We conclude that the L-ascorbate transporter is highly specific for L-ascorbate.
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Homologues of SgaT, like other PTS protein homologues, have been identified in a large number of evolutionarily divergent bacteria, but not in archaea or eukaryotes (M. H. Saier, Jr., unpublished results). Bacteria which encode SgaT homologues include numerous gram-negative proteobacteria, as well as many low- and high-G+C gram-positive bacteria. Except for species of Corynebacterium, Streptomyces, and Bacillus, almost all organisms possessing SgaTBA homologues are human or animal pathogens. Several organisms have two or more SgaT paralogues, including E. coli, which has three. In E. coli, our results suggest that the SgaTBA homologues do not transport L-ascorbate, since the sgaA, sgaB, and sgaT mutants are negative for L-ascorbate utilization, uptake, and phosphorylation. In some of the homologues found in other bacteria, SgaB domains are fused C terminal to the SgaT domains. For example, this is true of putative transporters in Vibrio cholerae (AAP96157; 586 amino acids [aa]), Pasteurella multocida (AAK02848; 625 aa), and Mycoplasma pulmonis (CAC13371; 650 aa). Homologues of SgaB and SgaA, but not SgaT, are also found in transcriptional activator proteins, where they function in regulation rather than sugar transport (10). A detailed bioinformatic analysis of SgaTBA systems will be published elsewhere.
The identification of SgaTBA as a novel enzyme II complex of the PTS represents an important advance, since SgaT is not homologous to any previously characterized enzyme IIC of the PTS. It does not, in fact, exhibit the topological features of any other recognized enzyme IIC. Topologically, it more closely resembles secondary carriers, although it is not homologous to any known secondary carrier. The recent discovery of a nonhomologous, nontransporting enzyme II complex specific for dihydroxyacetone resembling in sequence functionally characterized ATP-dependent dihydroxyacetone kinases (11) illustrates the versatility of the PTS in recruiting proteins that evolved for other catalytic purposes into this PEP-dependent PTS system. Since not all established enzyme II complexes are homologous (22), the use of SgaT as an enzyme IIC of the PTS, while representing a unique and novel example, does not establish a new principle. Nevertheless, the mechanism of phosphoryl transfer from SgaB-P to the substrate sugar acid may well prove to exhibit unique features. Further work will be required to establish the mechanistic details.
E. coli and several other enteric bacteria are normal inhabitants of the mammalian intestine, an organ that is essentially anaerobic. Because L-ascorbate is a common constituent of many plant and animal tissues (as well as of vitamin C tablets), the knowledge that enteric bacteria can transport and metabolize L-ascorbate under anaerobic conditions suggests that intestinal bacteria can compete with the intestinal mucosal cells for available sources of vitamin C. Mammals possess two high-affinity, stereospecific, L-ascorbate:Na+ symporters, one of which, SVCT1 (TC # 2.A.40.6.1), is localized primarily to the epithelial cells of the intestine, kidney, and liver (27). The Km of this system for its substrate has been reported to be 75 to 250 µM (4, 29). Since the L-ascorbate PTS permease transports its substrate with low micromolar affinity (9 µM; 10-fold lower than that observed for the mammalian system), bacterial uptake systems should effectively compete with the mammalian intestinal transporter. The fact that the E. coli system is only induced under anaerobic conditions fits with the anaerobic environment that exists in the intestinal lumen. The high substrate affinity displayed by the bacterial L-ascorbate permease is in the same range as that estimated from Km values reported for other PTS permeases (17). The physiological consequences of the competitive use of ascorbate by intestinal bacteria to human and animal health have yet to be evaluated. It will be interesting to determine what fraction of L-ascorbate enters bacteria versus the intestinal mucosal cells under a variety of normal physiological conditions in vivo.
This work was supported by NIH grant no. GM55434.
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8-barrel enzymes that catalyze unrelated reactions: orotidine 5'-monophosphate decarboxylase and 3-keto-L-gulonate 6-phosphate decarboxylase. Biochemistry 41:3861-3869.[CrossRef][Medline]
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