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Journal of Bacteriology, November 2004, p. 7229-7235, Vol. 186, No. 21
0021-9193/04/$08.00+0 DOI: 10.1128/JB.186.21.7229-7235.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Department of Life Sciences, Korea Advanced Institute of Science and Technology,1 Analytical Science Center, Samyang Central R & D Institute, Yusong-Ku, Taejon, Republic of Korea2
Received 15 July 2004/ Accepted 27 July 2004
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The initial finding of the production of MG was made with E. coli cells when glycerol metabolism involving glycerol kinase was unmodulated (5). Cell death by MG occurs within a few hours. However, it remains largely unknown how this regulatory abnormality occurs, as well as why MG is produced. Recent evidence indicates that the accumulation of MG in various cell types is widely associated with cellular processes, including oxidative stress, apoptosis, and disease complications (19). The targets of MG modification, affecting both protein and nucleic acid, appear to be either specific or nonspecific, depending on the intracellular level of MG accumulation (10).
Ribose uptake in bacteria is mediated by a high-affinity transporter consisting of the extracytoplasmic binding protein (RbsB), membrane permease (RbsC), and cytoplasmic ATPase (RbsA) (14). Several low-affinity transporters can also serve as an alternative route for ribose uptake. These include the allose transporter (10), the xylose transporter (18), and the glucose phosphotransferase system with altered specificity and expression (13). It was previously known that the rbsD gene, the first component of the rbs operon, is required when ribose is utilized by the low-affinity transporters. Recently, RbsD was characterized as a ribose mutarotase that catalyzes the conversion between the ß-pyran and ß-furan forms of ribose. Since the majority of ribose exists as ß-pyranose in solution, the intracellular supply of furanose may be limiting when the ribokinase with a preference for furanose is actively consuming ribose (17). This is particularly evident in cells transporting ribose at a lower affinity (13). It was found that monosaccharide mutarotases, including RbsD, are ubiquitous and conserved in both prokaryotes and eukaryotes (16).
Intracellular production of MG is achieved in E. coli and most bacteria by MG synthase encoded by the mgs gene (20). Although the corresponding gene in eukaryotic cells has yet to be characterized, alternative sources, such as P450, amine oxidase, and triose phosphate isomerase, have been implicated (19). The formation of MG from aminoacetone was reported for Staphylococcus aureus as part of a cycle for oxidation of L-threonine and glycine (11), while the compound can be generated nonenzymatically. Since MG is a strong electrophile known to modify a variety of macromolecules, cells have developed various methods of detoxification (9). The major pathway involves glyoxalase I, generating from MG S-D-lactoyl-glutathione, which is then converted to D-lactate and glutathione by glyoxalase II. The toxicity of MG in E. coli is affected by intracellular pH, which modifies the potassium efflux system activated by S-D-lactoyl-glutathione (20).
Here we report cell death caused by production of MG due to enhanced ribose uptake with an excess of mutarotase. A considerably higher level of MG was detected when cells were metabolizing ribose with a plasmid copy of RbsD. The unregulated production of MG appears to be due to a rapid increase in the glycolysis intermediates from ribose degradation. Such a metabolic burden may result in MG production by MG synthase. The majority of MG production is attributed to MG synthase, while the monoamine oxidase, being implicated in generating MG in other bacteria (11), contributed little MG.
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TABLE 1. Strains and plasmids
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Western blot analysis. Cells were grown to stationary phase in M9 glycerol medium. After sonication, the samples were lysed by boiling in 5x sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) sample buffer. Equal amounts of proteins (20 µg) were separated by SDS-12% PAGE and transferred to a polyvinylidene difluoride membrane (Amersham Co.). The RbsD protein was detected by use of an anti-RbsD and a horseradish peroxidase-conjugated anti-rabbit antiserum, followed by enhanced chemiluminescence detection (ECL; Amersham Co.).
Uptake assay for D-[14C]ribose. The uptake assay for D-[14C]ribose was carried out as described previously (6). Cells were grown in M9 medium with 0.4% glycerol, harvested at an optical density at 600 nm (OD600) of 1.0, washed three times with the same volume of 10 mM phosphate buffer (pH 7.0), and resuspended in the same buffer to a final OD600 of 0.2. The cell suspension was incubated at 30°C for 20 min. D-[14C]ribose (51.1 mCi/mmol; Du Pont Co.) was added at 2.0 µM to a 1.2-ml cell suspension. Samples of 0.3 ml were taken at 10, 20, 30, and 40 s and filtered through a 0.45-µm-pore-size nitrocellulose filter (Amicon). The filtered samples were washed twice with 0.3 ml of phosphate buffer. After the samples were dried, the radioactivity was measured in a scintillation cocktail.
Assays for cell growth, viability, and lethality. Growth rates were determined by using cells cultured in M9 medium containing 0.4% glycerol and appropriate antibiotics. After overnight incubation in a shaking incubator at 37°C, the culture was divided into two batches of fresh M9 medium with 0.4% glycerol. After 2 h, 0.2% D-ribose was added to one of the batches. Growth was monitored at OD600 with a Beckman DU-65 spectrophotometer. As a measure of cell viability, each strain was grown in M9 medium with 0.4% glycerol with appropriate antibiotics to an OD600 of 1.0. After the addition of 0.2% D-ribose, samples were taken at intervals. Viability was scored by plating serial dilutions onto LB plates with appropriate antibiotics. The plates were incubated for 8 h at 37°C, and the numbers of colonies were counted. To observe growth on plates, a colony from each LB plate was streaked onto an M9 minimal plate with 0.2% D-ribose. After 36 h of incubation at 37°C, the colony sizes were compared.
NMR analysis. The Bruker AVANCE-400 nuclear magnetic resonance (NMR) spectrometer, equipped with a temperature controller, was used for the NMR experiments. All NMR experiments were carried out with 500 µl of the supernatant, with 10% D2O added as a locking substance. A 5-mm-diameter NMR tube was used, and the sample was kept at 28°C. As a measure of MG released from cells, growth media were taken at intervals, and the cells were removed by centrifugation for 1 min at 16,000 x g. The supernatant was stored at 20°C until the measurement was performed. For quantitative analysis, the 1H-NMR experiment was performed with a 30° pulse with long relaxation delay. An assignment of the MG peak in the 1H-NMR spectra was made with reference to the NMR spectrum for commercially available MG (Sigma Chemical Co.).
In order to detect ribose 5-phosphate, cells were prepared as described for the uptake assay for ribose, but with 5% ribose added. After 10 s of incubation, the cells were harvested by centrifugation for 3 min at 4,000 x g. The pellet was resuspended in 1 ml of phosphate buffer, followed by sonication and centrifugation for 5 min at 16,000 x g. The supernatant was immediately frozen and saved in a freezer until NMR measurements were done. The 31P-NMR assay was performed with a 30° pulse with a relaxation delay of 6 s. About 1,000 transients were accumulated for each sample (RbsD+ and RbsD). For identification of ribose 5-phosphate, the RbsD+ sample was supplemented with ribose 5-phosphate (Sigma Chemical Co.) and used as a standard.
Quantitation of MG by HPLC. The amount of MG was measured by high-performance liquid chromatography (HPLC) of growth medium with 0.2% D-ribose, which was prepared by a method similar to that used for the NMR experiment. As described previously (3), 0.1 ml of 5 M perchloric acid (Sigma Chemical Co.) was added to a 0.9-ml sample. Samples were incubated on ice for 10 min and centrifuged at 16,000 x g for 10 min. The samples were derivatized at 20°C for 4 h with 500 nmol of o-phenylenediamine (o-PD; Aldrich Chemical Co.), and loaded with an internal standard, 2.5 nmol of 5-methylquinoxaline (5-MQ; Aldrich Chemical Co.). Solid-phase extraction was performed with a C18 SPE cartridge (Waters Sep-Pak C18 plus cartridge; Millipore Corp.), previously activated with 8 ml of acetonitrile, followed by 8 ml of 10 mM KH2PO4 (pH 2.5). The cartridge was rinsed with 3 ml of 10 mM KH2PO4, pH 2.5, and the retentate was eluted with 3 ml of acetonitrile. Eluates were filtered through a 0.2-µm-pore-size Gelman polyvinylidene difluoride filter (Fisher Scientific).
The quinoxaline derivative of MG (2-MQ) was detected with an internal standard (5-MQ) at 315 nm by HPLC (HP1100 system; Agilent Technologies). The mobile phase was a 68:32 (vol/vol) solution of 10 mM KH2PO4 (pH 2.5)-HPLC-grade acetonitrile with flow rate of 1.0 ml/min. A volume of 150 µl was injected. Here, the retention times of 2-MQ and 5-MQ were approximately 6.3 and 9.7 min, respectively. Peak integrality ratios of 2-MQ to 5-MQ were used for quantitative analysis. Measurements were made in triplicate.
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rbsD-rbsR) (Table 1). The ribose-induced lethality was not observed when we overproduced only RbsD with a chromosomally encoded rbs operon or when rbsDACBK was overproduced in a single plasmid, although slight growth retardation was detected (data not shown). This may have been due to overproduction of the membrane proteins. Since the strain we used initially was found to have a mutation in mlc (13), encoding a negative regulator for ptsG, we excluded the possibility of an mlc effect by repeating the experiment with a strain derived from MC4100 (mlc+), showing the same growth phenotype as that of CK281 (data not shown). RbsD is normally not required for ribose utilization, as shown by the growth of strains containing only the rbsACBK components on ribose (Fig. 1A, right). The growth inhibition was strictly dependent on ribose and RbsD, regardless of the presence of other sugars, such as glycerol (Fig. 1A, left), xylose, xylulose, ribulose, and glucose (data not shown). When RbsD was present, the inhibition started immediately upon ribose addition, and no increase in cell density was observed (Fig. 1B, right).
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FIG. 1. Effect of RbsD on cell growth. (A) Growth of various E. coli strains on M9 minimal plates with 0.2% D-ribose (Rib) and 0.4% glycerol (Gly) as carbon sources. The plates were incubated for 1.5 days. Plate quadrants 1, CK281/pACYC184/pJK5; plate quadrants 2, CK281/pACYC184/ pBR322; plate quadrants 3, CK281/pJK10/pBR322; plate quadrants 4, CK281/pJK10/pJK5. (B) Growth in M9 minimal medium with 0.4% glycerol as a carbon source. After 2 h of incubation, 0.2% D-ribose was added (). The strains used were CK281/pJK10/pBR322 (RbsD) and CK281/pJK10/pJK5 (RbsD+).
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FIG. 2. Effect of RbsD on ribose uptake. Inset, Western blot for RbsD, which was analyzed by SDS-12% PAGE. Cells were grown in M9 minimal medium with 0.4% glycerol and resuspended in 10 mM phosphate buffer. After D-[14C]ribose was added, radioactivity was measured as described in the text. Uptake rates of the following strains are shown: Rbs, CK281/pACYC184/pBR322; Rbs+, OW1/pACYC184/pBR322; pACBK, CK281/pJK10/pBR322; pACBK/D, CK281/pJK10/pJK5.
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FIG. 3. Involvement of RbsD and RbsK in cell death. (A) Assay of cell survival. Cells were grown in M9 medium with 0.4% glycerol, to which 0.2% D-ribose was added. Cell viability was determined by serial dilutions and spreading onto LB plates: , CK281/pJK10/pJK5; , CK281/pJK12/pBR322; , CK281/pJK10/pBR322; , CK281/pJK12/pJK5. D, RbsD; K, RbsK. (B) Accumulation of ribose 5-phosphate in the presence of RbsD. Cells (RbsD+ and RbsD) were grown in M9 medium with 0.4% glycerol as described in Materials and Methods. Ribose 5-phosphate was detected by 31P-NMR measurement. The peaks detected to the right of ribose 5-phosphate presumably originated from the buffer or from other metabolites. The compound used as a standard was obtained from Sigma Chemical Co. and added to the RbsD+ sample (Std). D, CK281/pJK10/pBR322; D+, CK281/pJK10/pJK5.
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Cell death by RbsD results from the production of MG. Since we noticed that the kinetics of ribose-induced cell death showed a similarity to the kinetics observed for MG toxicity (8), the levels of MG produced by the ribose-treated cells were measured. MG was detected by 1H-NMR in comparison to the commercially available compound. As shown in Fig. 4, only the RbsD-positive strain produced MG, which was determined by either NMR (Fig. 4A) or HPLC via 2-MQ derived from the reaction with o-PD (Fig. 4B). Cells were grown in M9 medium with 0.4% glycerol and mixed with 0.2% ribose at an OD600 of approximately 1.0. The level of MG rose sharply upon addition of ribose. After several hours, the MG level reached a steady state (Fig. 4B) at ca. 1 mM. In the strain lacking RbsD, the MG level was very low and did not cause any cell death. It was reported that the threshold level of MG leading to cell death was about 0.6 mM (2).
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FIG. 4. Accumulation of MG in strain with RbsD. Cells were grown in M9 minimal medium with 0.2% D-ribose and 0.4% glycerol as carbon sources. The culture medium was sampled at the indicated times after addition of 0.2% D-ribose (13 mM). The samples were centrifuged, and the supernatants were used for further analysis. (A) Detection of MG by 1H-NMR. The MG peaks are indicated by arrows. The peak found at 1.9 ppm in the commercially available MG (Sigma Chemical. Co.) used as a standard is acetic acid. (B) Assay for MG by HPLC. Samples were prepared by derivatization with o-PD at 20°C for 4 h and by extraction with a C18 SPE cartridge. The HPLC mobile phase was composed of 68% 10 mM KH2PO4 (pH 2.5) and 32% acetonitrile. 5-MQ (100 µM) was added as an internal standard. D-Ribose was added at a concentration of 0 mM ( and ) or 13 mM ( and ). D, CK281/pJK10/pBR322; D+, CK281/pJK10/pJK5.
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FIG. 5. (A) Effect of a mutation in MG synthase on cell viability. The mgs-null strain (MK1) was derived from CK281. Cells were grown in M9 minimal medium with 0.4% glycerol as a carbon source with (closed symbols) or without (open symbols) the addition of 0.2% D-ribose. The strain used was MK1/pJK10/pJK5 ( and ). (B) An involvement of monoamine oxidase (MA) in MG production. The maoA derivative (MK2) and the maoA mgs derivative (MK3) were from CK281. Cells were grown in M9 medium with 0.4% glycerol with supplements including 1 mM threonine, to which 0.2% D-ribose was added. Strains are CK281/pJK10/pJK5 (), MK1/pJK10/pJK5 ( ), MK2/pJK10/pJK5 ( ), and MK3/pJK10/pJK5 ( ).
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Although an initial observation of cell death (Fig. 1) was made for the strain with both the transporter (RbsACBK) and RbsD overproduced, it was found that a strain without RbsD also accumulated some amount of MG (Fig. 4B). In addition, adding more ribose to the transporter-overproduced strain without RbsD enhanced MG production (data not shown), implying that the metabolic disturbance leading to MG production is due to a steep increase in intracellular ribose catabolism. However, without RbsD, the simple increase in sugar concentration did not result in persistent cell death (data not shown). Thus, the role of RbsD appears to be critical, presumably in rate enhancement towards the lethal production of MG. Since RbsD is involved in the anomeric conversion of ribose, the effect of RbsD on sugar uptake may be due to its activity on the early stage of ribose conversion after entry into the cell.
Ribose enters the glycolytic pathway after being converted to xylulose 5-phosphate via ribose 5-phosphate (Fig. 6). The entry is mediated by a concerted action of transketolase and transaldolase to generate fructose 6-phosphate and glyceraldehyde 3-phosphate. Enhanced uptake of xylose was reported to result in the accumulation of MG, perhaps by increasing the levels of the glycolytic intermediates. However, ribose was not as efficient in producing MG as was xylose (19), which might be due to differences in their metabolic rates. In our experiment, overproduction of RbsD was critical in facilitating the entry of ribose into the glycolytic pathway. It appears that this is due to a faster conversion of ribose into ribose 5-phosphate. Previously, an external addition of 2.5 mM ribose 5-phosphate had only a slight effect on the MG level (between 60 and 70 µM) (7). In our experiment, an intracellular level of ribose 5-phosphate would be much higher, since the ribose was added at a concentration greater than 10 mM.
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FIG. 6. Metabolic pathway leading to generation and detoxification of MG. Abbreviations: D-Rib, D-ribose; D-Rib-5-P, D-ribose 5-phosphate; D-Ru-5-P, D-ribulose 5-phosphate; D-Xu-5-P, D-xylulose 5-phosphate; F-6-P, fructose 6-phosphate; FDP, fructose diphosphate; G-3-P, glyceraldehyde 3-phosphate; DHAP, dihydroxyacetone phosphate; rpi, the ribose 5-phosphate isomerase gene; rpe, the ribulose 5-phosphate 3-epimerase gene; tkt, the transketolase gene; tal, the transaldolase gene; mgsA, the MG synthase A gene; maoA, the monoamine oxidase A gene; gloI,II, the glyoxalase I,II gene; GSH, glutathione.
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The exact role of MG in cell growth is still poorly understood, although evidence of its signaling function in eukaryotic cells has been proposed previously (4). In prokaryotes, the Mgs pathway appears to be crucial in reducing the level of sugar phosphates by generating MG. Therefore, an mgs-negative strain may suffer growth impairment under physiological conditions with excess sugar phosphates. In our case, an addition of phosphates to the medium relieved the growth inhibition of the mgs-negative strain (I. Kim, unpublished data), implying that the MG pathway contributes to intracellular recycling of inorganic phosphate. It is conceivable that cells might have to develop the Mgs pathway during evolution in order to better cope with a physiological assault imposed by a constantly changing environment.
We thank I. R. Booth and Y. Murooka for the strains.
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