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Journal of Bacteriology, February 2004, p. 638-645, Vol. 186, No. 3
0021-9193/04/$08.00+0 DOI: 10.1128/JB.186.3.638-645.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Division of Infectious Diseases, Veterans Affairs Medical Center, and Department of Medicine, University of California, San Francisco,1 Department of Pharmaceutical Chemistry, University of California, San Francisco, and the Buck Institute for Age Research, Novato,California2
Received 16 September 2003/ Accepted 23 October 2003
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70 to 100 monosaccharide residues per GspB
polypeptide (primarily N-acetylglucosamine and glucose).
Analysis of GspB in protoplasts of secA2 or secY2
mutant strains, which do not export GspB, indicates that GspB is
glycosylated in the cytoplasm of these strains. The combined data
suggest that the native GspB is a glycoprotein and that it may be
glycosylated prior to
export. |
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Numerous mechanisms for the attachment
of bacteria to platelets have been proposed. Our own studies indicate
that platelet binding by Streptococcus gordonii strain M99 is
predominantly mediated by the cell surface protein GspB
(2). This 280-kDa protein
has a cell wall-anchoring domain characteristic of many gram-positive
bacterial surface proteins (an LPXTG motif, a hydrophobic domain, and a
charged tail [10,
18,
19]). However,
several features of GspB are unusual. First, it does not have a typical
amino-terminal signal for export. Instead, GspB is predicted to have a
90-amino-acid signal peptide, which is approximately three times longer
than signals for export mediated by the general protein secretion (Sec)
system in gram-positive bacteria
(25,
27). Second, GspB
migrates during sodium dodecyl sulfate-polyacrylamide gel
electrophoresis (SDS-PAGE) with an apparent molecular mass that is much
greater than predicted. Third, a majority of the protein is comprised
of
190 semiconserved repeats of the peptide motif
SASESASTSASV. This feature of an extended region
of serine-rich repeats has recently been noted for several other
streptococcal surface proteins, including the S. gordonii DL1
sialic acid-binding adhesin Hsa
(23) and the
Streptococcus parasanguis fimbria-associated protein Fap1
(28).
GspB is also unusual because a 13.6-kb region downstream of the 9.2-kb gspB structural gene (Fig. 1) is required for its expression. This region encodes SecA2 and SecY2, which are homologues of two highly conserved components of the general Sec system. Mutation of either secA2 or secY2 results in the accumulation of GspB in the cytoplasm, indicating that they are required for the export of GspB. However, mutation of these genes has no apparent effect on the transport of other proteins, which suggests that SecA2 and SecY2 selectively mediate the export of GspB (2). Although the export of GspB by a dedicated export pathway is consistent with the fact that GspB does not have a typical N-terminal signal peptide, the specific features of the GspB sequence or structure that are recognized by SecA2 and SecY2 for export are unknown.
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FIG. 1. gspB-sec
locus of M99. GspB is a cell surface-anchored platelet binding adhesin.
Gly, Nss, and Gtf are likely to function in carbohydrate metabolism:
Gly is predicted to be a cytoplasmic glycosyl transferase (family 8);
Nss is similar to nucleotide sugar synthetases; and Gtf is 46%
similar to the Bacillus subtilis polyglycerol phosphate
-glucosyl transferase (S06048). SecA2 and SecY2 are similar to
the SecA ATPases and the SecY transmembrane translocases of various
organisms (components of the general secretory pathway), respectively,
and are required specifically for the export of GspB. The proteins
encoded by orf1 to orf4 show no similarity to any
proteins of known
function.
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TABLE 1. Strains
and plasmids used in the present study
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20 min after the addition of the OPD substrate. The
data are reported as the mean ± standard deviation of the
A450 for the specified lectin minus the averaged
value of wells that were treated identically except for the omission of
the biotinylated lectin. Differences in lectin binding were compared by
the unpaired t test, using the Welch
modification.
Construction of PS497, PS498, and PS526.
The
S. gordonii strain PS497, which secretes a truncated,
C-terminally His6-tagged version of GspB, was constructed as
follows. A 3-kb SpeI-NheI DNA fragment spanning the
central region of serine-rich repeat region 2 (srr2) (Fig.
2), and including codons 1059 to 2062 of 3072, was cloned in pBluescript
pKS(-). The plasmid was digested with NotI, and the
Klenow fragment of DNA polymerase was used to fill in the 5'
overhanging ends. The plasmid DNA was then digested with SacI
and ligated to a double-stranded DNA linker that had been made by
annealing the 5'-end-phosphorylated primers
5'-CACCACCACCACCACCACTAAGGATCCGAGCT-3'
and
5'-CGGATCCTTAGTGGTGGTGGTGGTGGTG-3'.
The linker has a 4-nucleotide SacI-compatible
3' overhang adjacent to a BamHI restriction site
(underlined). In-frame fusion of six histidine and one stop codons to
codon 2062 of gspB (along with four codons derived from the
pBluescript multicloning site) was confirmed by DNA sequence analysis.
The gspB fragment was then excised with BamHI and
ligated to pEVP3 that had been digested with the same restriction
enzyme. The resulting plasmid, pB194His6int, was propagated in
Escherichia coli strain DH5
and then introduced into
M99 by natural transformation as described previously
(2). To construct strains
PS498 and PS526 (which express but do not secrete the C-terminally
His6-tagged version of GspB), pB194His6int was used to
transform the secY2 mutant strain PS426 or the secA2
mutant strain PS469, respectively. Integration of pB194His6int at the
expected chromosomal site in each mutant strain was confirmed by
Southern blot analysis.
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FIG. 2. Features
of the serine-rich repeat protein GspB and the corresponding genetic
locus. (A) Restriction map of the M99 chromosomal region
spanning gspB. The locations of selected restriction sites in
gspB are indicated. H3, HindIII; H2, HincII;
Nh, NheI; Ns, NsiI; S, SpeI. (B)
Diagram of GspB and truncated derivatives. The number associated with
the GspB designation indicates the predicted molecular mass in
kilodaltons. GspB194 was engineered with a C-terminal His6
tag. The hatched sections correspond to srr1 and srr2. wt, wild
type.
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Monosaccharide composition analysis. Prior to monosaccharide analysis, free N-acetylglucosamine was separated from the eluted GspB derivatives (or the negative control sample prepared in parallel) by two rounds of desalting into distilled H2O. The desalted samples were then concentrated to 400 pmol ml-1 in YM-100 Centricon units (Millipore). The identification and quantification of monosaccharides bound to the purified GspB variants were accomplished by high-pH anion-exchange chromatography, combined with pulsed amperometric detection, at the Glycotechnology Resource Training Center at the University of California, San Diego. In brief, samples were hydrolyzed for 4 h at 100°C in 2 N trifluoroacetic acid. The hydrolysates were dried under vacuum, washed with methanol, dried again, and then dissolved in distilled H2O. The levels of fucose, glucose, N-acetylglucosamine, N-acetylgalactosamine, and galactose were determined by isocratic chromatography on a CarboPac PA10 column (Dionex) in 18 mM NaOH at a flow rate of 1 ml min-1. Rhamnose, mannose, and xylose were measured on a CarboPac MA1 column (Dionex) developed in 60 mM NaOH for 5 min, followed by a gradient elution of 60 to 660 mM NaOH over 30 min at a flow rate of 0.4 ml min-1.
Preparation of antiserum against recombinant GspB. A 2.3-kb SpeI fragment of gspB that included the nonrepeat region between srr1 and srr2, along with the first 1.3 kb of srr2 (Fig. 2), was cloned in pBluescript pKS(-). The gspB fragment was then excised from the plasmid using BamHI and NotI and ligated to pET28b (Novagen) that had been digested with the same restriction enzymes. This resulted in the in-frame fusion of six histidine codons at both the 5' and 3' ends (i.e., N- and C-terminal His6 tags), which was confirmed by DNA sequence analysis of the plasmid DNA. Recombinant-protein expression was induced in the E. coli host strain BL21(DE3) with 0.4 mM isopropyl ß-D-thiogalactopyranoside, and the recombinant GspB (rGspB) was purified using nickel affinity chromatography. The purified rGspB was used to immunize New Zealand White rabbits (Covance).
Analysis of secreted, cell wall, and protoplast proteins. For analysis of secreted products, proteins were precipitated from culture supernatants by using trichloroacetic acid as described previously (1). Cell wall proteins were extracted from S. gordonii strains by mutanolysin treatment (14). The mutanolysin extraction buffer included raffinose (26% [wt/vol]) to maintain the integrity of the protoplasts. For analysis of cytoplasmic components, protoplasts (generated by digestion of the cell wall with mutanolysin) were lysed by suspension in SDS-PAGE sample buffer, followed by boiling them for 10 min. Proteins were separated by SDS-PAGE through 3 to 8% Tris-acetate gels (Invitrogen) under reducing conditions. The proteins were either stained with the SYPRO Ruby protein gel stain (Molecular Probes) or transferred to BioTrace NT nitrocellulose membranes using the XCell SureLock transfer apparatus (Invitrogen). For Western blot analysis, membranes were incubated for 1 h in a suspension of 1x blocking reagent (Roche) in DPBS. Anti-rGspB polyclonal rabbit serum was used at a dilution of 1:1,000, and anti-His6 mouse monoclonal antibody (Novagen) was used at a 1:2,000 dilution. Peroxidase-conjugated anti-rabbit or anti-mouse serum (Sigma) was used at a 1:25,000 dilution. The blots were developed with the SuperSignal West Pico chemiluminescent substrate (Pierce). Detection of carbohydrate on the blotted proteins was performed with the DIG-glycan detection kit as recommended by the manufacturer (Roche), except that a peroxidase-conjugated anti-digoxigenin antibody was used in place of the alkaline phosphatase-conjugated anti-digoxigenin.
Effect of inhibitors of glycosylation on GspB expression. PS497 was grown for 18 h in THB and then diluted 1:10 in THB or THB containing glycosylation inhibitors at the concentrations used by Erickson and Herzberg (7) for treatment of protoplasted cells: 20 µg of tunicamycin (an inhibitor of N-linked glycosylation)/ml, 0.07 µg of monensin (an inhibitor of O-linked glycosylation)/ml, or 10 µg of bacitracin (a general inhibitor of glycosylation)/ml. The cultures were incubated for 8 h at 37°C and then centrifuged for 15 min at 3,000 x g. The supernatants were transferred to clean tubes, and proteins were precipitated using trichloroacetic acid as described above. The proteins were dissolved in SDS-PAGE sample buffer and then boiled for 10 min before being loaded into wells of 3 to 8% polyacrylamide gels. The proteins were transferred to nitrocellulose, and GspB194 was detected by Western blotting, using an anti-His6 monoclonal antibody.
Treatment of GspB with deglycosylating enzymes. Purified GspB105 and GspB194 were treated with a mixture of glycosidases (ProZyme) as recommended by the manufacturer. In brief, 4 pmol (400 or 800 ng) of the GspB derivatives was incubated for 18 h at 37°C under denaturing conditions with a mixture of enzymes consisting of 5 U of peptide:N-glycosidase F (PNGase F) 0.005 U of sialidase A, 0.00125 U of endo-O-glycosidase, 0.003 U of ß(1,4)galactosidase, and 0.04 U of glucosaminidase. As a control, 5 µg of the control glycoprotein fetuin was treated with the same mixture. The enzymatically treated GspB and fetuin samples were combined with SDS-PAGE sample buffer, heated for 10 min at 70°C and then loaded into wells of NuPAGE bis-Tris 4 to 12% gradient gels (Invitrogen). Following electrophoresis, the proteins were stained with SYPRO Ruby or subjected to Western blotting and examined for changes in electrophoretic mobility compared with the same glycoproteins that had not been treated with glycosidases.
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TABLE 2. Lectins
used in the current study
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FIG. 3. Lectin
binding to S. gordonii strain M99 and the
GspB- strains PS321 and PS436 (left to
right). Biotinylated forms of the indicated lectins were
assessed for binding to bacteria that were immobilized in 96-well
plates. The asterisks indicate values that are
significantly different from that of the parental strain, M99
(P < 0.05). The error bars indicate standard
deviations.
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FIG. 4. Inhibition
of succinylated-WGA binding to M99 by GlcNAc. The effect of
GlcNAc on the binding of succinylated WGA to M99 and the
GspB- strain PS321 was assessed by the whole-cell
lectin binding
assay.
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FIG. 5. Detection
of carbohydrate linked to GspB and other S. gordonii cell wall
proteins. The proteins extracted from M99 (lanes 1, 3, and 5) or the
gspB mutant strain PS436 (lanes 2, 4, and 6) were separated by
electrophoresis through 3 to 8% polyacrylamide gradient gels.
The proteins were then transferred to nitrocellulose and either
examined for the presence of carbohydrate by using the DIG-glycan
detection kit (lanes 1 and 2) or probed with a polyclonal anti-rGspB
serum (lanes 3 and 4). To confirm that comparable amounts of total
protein were loaded in each lane, gels run in parallel were stained
with SYPRO Ruby (lanes 5 and
6).
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FIG. 6. Dependence
of GspB194 export on components of the accessory Sec system. GspB194
was detected using an anti-His6 monoclonal antibody. The
upper lanes contain proteins precipitated from 160 µl of the
culture medium; the lower lanes were loaded with protoplasts of
bacteria in 120 µl of culture. PS498 and PS526 are derivatives
of strain PS497 that have mutations in secY2 and
secA2,
respectively.
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The three purified GspB
derivatives were initially examined by SDS-PAGE. Each of the variants
was readily detected by Western blot analysis, using an anti-rGspB
serum (Fig.
7, lanes 1 to 3). Notably, each of the variants was found to migrate with
a molecular mass
150 kDa greater than predicted. The purified
proteins were subsequently examined for the presence of carbohydrate,
using digoxigenin-labeled hydrazide as described above. Each of the
GspB variants showed a strong positive reaction (lanes 4 to 6), whereas
no reactivity was seen with the negative control protein (creatinase)
(data not shown). The proteins were also examined for the ability to be
stained with conventional protein stains. Like native GspB, GspB274 and
GspB194 were refractory to staining with Coomassie or silver, which is
a noted characteristic of highly anionic glycoproteins
(1). Similarly, neither
protein bound the fluorescent stain SYPRO Ruby (Fig.
7, lanes 8 and 9). The
more truncated GspB derivative GspB105, although still resistant to
staining with Coomassie, was detectable with SYPRO Ruby (Fig.
7, lane 7). The combined
results suggest that the secreted GspB variants are glycosylated in a
manner similar to that of the full-length native, cell wall-associated
GspB.
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FIG. 7. SDS-PAGE
analyses of truncated derivatives of GspB. The proteins were purified
from S. gordonii culture supernatants. The predicted masses
(in kilodaltons) of the GspB variants are indicated along the top of
the gel. The proteins in lanes 1 to 3 (1 pmol of GspB per lane)
underwent Western blot analysis using a polyclonal anti-rGspB serum.
The proteins in lanes 4 to 6 (1 pmol per lane) were analyzed for the
presence of carbohydrate, using the DIG-glycan detection kit. The
proteins in lanes 7 to 9 (4 pmol per lane) were stained with SYPRO
Ruby. Note that the proteins in lanes 8 and 9 are refractory to
staining with SYPRO Ruby and are thus not readily apparent here. The
molecular mass standards correspond to cross-linked multimers of
phosphorylase b. Lanes 1, 4, and 7, GspB105; lanes 2, 5, and 8,
GspB194; lanes 3, 6, and 9,
GspB274.
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TABLE 3. Monosaccharide
analysis of carbohydrates associated with GspB105 and
GspB194
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10% (wt/wt) carbohydrate.
The carbohydrate
content of GspB194 was also examined. The same two major
monosaccharides, GlcNAc and glucose, were present in a ratio of 30:73
residues per GspB194 polypeptide (Table
3). A minor amount of
N-acetylgalactosamine was detected, whereas galactose was not.
The total carbohydrate associated with GspB194 (105 nmol per nmol of
GspB194) corresponds to
9% (wt/wt) of the total
glycoprotein mass. The composite results suggest that the native GspB
is likely to have a carbohydrate composition similar to that of the
C-terminally truncated variants.
Linkage analysis. Covalent attachment of carbohydrate to polypeptides can occur either via N linkage to asparagine (Asn) residues or via O linkage to serine (Ser) or threonine (Thr) residues. To characterize the type of linkages on GspB, the lectin-purified GspB variants were treated with a cocktail of deglycosylating enzymes known to remove carbohydrate from eukaryotic glycoproteins. At least one of these enzymes (PNGase F) has also been shown to deglycosylate prokaryotic glycoproteins (7, 15). Treatment with the glycosidases produced no detectable change in the electrophoretic mobility of the GspB variants (data not shown). In addition, growth of S. gordonii in the presence of tunicamycin (an inhibitor of N-linked glycosylation), monensin (an inhibitor of O-linked glycosylation), or bacitracin (a general inhibitor of glycosylation) had no effect on GspB expression or electrophoretic mobility (not shown). The combined results suggest that the carbohydrate linkages of GspB are different from the typical linkages found on eukaryotic glycoproteins.
GspB is glycosylated in the protoplasts of secA2 and secY2 mutant strains. Since the glycosyl transferases encoded in the gspB-sec operon do not have amino-terminal export signals, these proteins are predicted to be localized to the cytoplasm. We therefore sought to determine whether GspB could be glycosylated prior to, or independently of, export. For this analysis, we used secY2 mutant strains, which do not export GspB (2) (Fig. 6). The protoplast proteins were subjected to SDS-PAGE and examined for the presence of carbohydrate, using the digoxigenin-hydrazide labeling described above. A single carbohydrate-containing protein was detected in the strains expressing either full-length GspB (GspB286) or GspB194 (Fig. 8, lanes 1 and 2). A glycoprotein was less readily detected in the GspB105-expressing secY2 mutant strain PS466 (lane 3), whereas no glycoprotein was seen in protoplasts of the gspB null mutant strain PS436 (lane 4). The glycoproteins migrated the same distance as did GspB or the GspB variants, as determined by Western blotting of samples run in parallel and probed with anti-rGspB polyclonal antiserum (lanes 5 to 8). This indicated that the glycoprotein detected in these protoplasts was indeed GspB. Similar results were obtained if the protoplasts were sonicated and debris was removed prior to analysis (data not shown), indicating that the glycoproteins were in the soluble versus membrane-associated fraction of the protoplasts. Furthermore, similar results were also obtained when analyzing GspB expressed by secA2 mutant strains (data not shown). The combined results indicate that GspB can be glycosylated in the cytoplasm of S. gordonii independently of export.
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FIG. 8. Detection
of glycosylated GspB in S. gordonii protoplasts. Each lane
contained material from protoplasts of cells in a 120-µl
culture volume. Lanes 1 to 4, proteins were examined for carbohydrate.
Lanes 5 to 8, proteins were subjected to Western blot analysis using
the anti-rGspB serum. Lanes 1 and 5, PS426 (GspB286
SecY2-); lanes 2 and 6, PS498 (GspB194
SecY2-); lanes 3 and 7, PS466 (GspB105
SecY2-); lanes 4 and 8, PS436
(GspB-).
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By far the most extensively characterized bacterial glycoproteins are the S-layer proteins (17). These abundant, lattice-forming, cell surface proteins may have a total carbohydrate content of 2 to 20% (wt/wt). There is typically one type of glycan chain per polypeptide, but these can vary in length due to different degrees of polymerization (from 20 to 50 units) of repeating units of two to six monosaccharides. The glycan chains may have a core of one to three sugars and are attached at two to six sites per polypeptide, predominantly via an O linkage. Composite analyses of other bacterial glycoproteins indicate that they are often very different from, and more varied than, eukaryotic glycoproteins (3, 16, 26). This includes differences not only in the types of constituent monosaccharides but also in the glycan chain length, the interlinking core region of the glycan chain, the configuration of the glycosidic linkage between the carbohydrate and the protein, and the acceptor amino acid sequence.
The results presented here indicate that the S. gordonii surface protein GspB is a new example of a bacterial glycoprotein adhesin. Truncated derivatives of GspB, which lack the carboxy-terminal peptidoglycan linkage domain, are heavily glycosylated and have a total carbohydrate content of 9 to 10% (wt/wt). Analyses of the GspB-linked carbohydrate by high-pH anion-exchange chromatography, along with lectin binding profiles, indicate a predominance of glucose and GlcNAc residues, as well as minor amounts of galactose and N-acetylgalactosamine. At least some of the GlcNAc residues appear to be located at the nonreducing termini of the carbohydrate chains, as determined by affinity for the lectin GSL-II, but the order of the remaining sugars remains to be determined.
A recent report of the monosaccharides associated with the GspB homologue Fap1, a fimbrial glycoprotein of S. parasanguis, indicates both similarities, and distinct differences in monosaccharide content compared with GspB. Fap1 also has a predominance of GlcNAc and glucose, with minor amounts of galactose, N-acetylgalactosamine, and rhamnose (20). However, Fap1 has a higher percentage of GlcNAc than glucose (GlcNAc, glucose, galactose, N-acetylgalactosamine, and rhamnose were present in a ratio of 39:29:5:1:1). A comparison of the glycosyl transferases that modify GspB with those that act on Fap1 may provide insights into the specificity of and control over carbohydrate chain length and composition.
The monosaccharides associated with GspB appear to be quite different from those linked to another streptococcal protein, the platelet aggregation-associated protein (PAAP) of Streptococcus sanguis. In one of the earliest demonstrations of covalent linkage of a carbohydrate to a bacterial protein, the polysaccharide bound to PAAP was found to be rich in rhamnose and N linked to Asn residues (7). This suggests that streptococci may have a variety of glycoproteins that interact with platelets, as well as other human cells or tissues.
A number of glycosidases have been used in the characterization of glycoproteins. The glycosidase PNGase F can remove most N-linked oligosaccharides from eukaryotic glycoproteins, and it released the N-linked carbohydrates from PAAP (7) and from two Borrelia burgdorferi glycoproteins (15). However, the enzyme had no affect on the electrophoretic mobility of GspB194 or GspB105. In addition, endo-O-glycosidase had no effect on the GspB variants. This enzyme is more specific than PNGase F in that it removes only the Galß(1,3)GalNAc core present on most O-linked eukaryotic glycoproteins, and any modification of the core structure will block the action of the enzyme. The negative result obtained by treatment with endo-O-glycosidase thus does not rule out the possibility that the GspB-bound carbohydrate is O linked. As seen with other bacterial glycoproteins, however, the O linkages on GspB are likely to be different from those of eukaryotic glycoproteins. Determination of the precise monosaccharide and anomeric configuration of the covalent linkage to the Ser or Thr residues of GspB will require further analysis.
In the GspB polypeptide, there are 1,599 Ser and Thr residues that are potential candidates for sites of covalent attachment of glycan chains. However, not all of these residues may undergo modification. In a study of the Campylobacter jejuni flagellin glycoprotein, Thibault et al. found that just 19 of 107 Ser and Thr residues were modified by pseudaminic acid polymers (24). The carbohydrate was not attached to random Ser or Thr residues or to any specific consensus peptide sequence. Instead, attachment was limited to residues accessible at the surface of the folded protein. Determination of the length and structure (linear versus branched) of the GspB-linked carbohydrate chains, along with the number and distribution of attachment sites per GspB polypeptide, will require more detailed chemical and structural analyses.
For most bacterial glycoproteins, it is unknown whether glycosylation occurs in the cytoplasm as opposed to the periplasm (of gram-negative species) or cell wall (of gram-positive species). However in Haemophilus influenzae, the HMW1 adhesin has been shown to be glycosylated in the cytoplasm (11). The E. coli TibA and AIDA-I autotransporter adhesins may also undergo glycosylation in the cytoplasm (3). The studies presented here indicate that in S. gordonii, the export of GspB is not a prerequisite to glycosylation of this protein. This is consistent with the observation that the gspB-sec operon-encoded enzymes that are likely to be involved in carbohydrate metabolism (Gly, Nss, and Gtf) lack apparent signal peptides and are predicted to be localized to the cytoplasm of S. gordonii.
The extensive glycosylation of GspB may have multiple effects on the function of the protein. Although it is possible that the carbohydrate residues could be directly involved in adherence to platelets, preliminary evidence has shown that neither 500 mM GlcNAc nor 250 mM glucose inhibits the binding of M99 to platelets (unpublished results). However, this does not exclude the possibility that the platelet receptor for GspB might recognize a distinct oligosaccharide component of GspB. Since we have not been able to detect a nonglycosylated version of GspB expressed by S. gordonii, it has not been possible to confirm whether glycosylation is required for platelet binding. Alternatively, glycosylation may directly affect the conformation or stability of the GspB polypeptide. One further possibility is that glycosylation might be necessary for export mediated by the accessory secretory proteins SecA2 and SecY2. We are using a combination of genetic and biochemical analyses to explore these possibilities.
We thank B. Hayes for his assistance with the monosaccharide analysis.
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