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Journal of Bacteriology, February 2004, p. 1129-1135, Vol. 186, No. 4
0021-9193/04/$08.00+0 DOI: 10.1128/JB.186.4.1129-1135.2004
Copyright © 2004, American Society for Microbiology. All Rights Reserved.
Giuseppina Cangiano,1 Maurilio De Felice,1 Adriano O. Henriques,2 and Ezio Ricca1*
Dipartimento di Fisiologia Generale ed Ambientale, Università Federico II, Naples, Italy,1 Instituto de Tecnologia Química e Biológica, Universidade Nova de Lisboa, 2781-901 Oeiras,2 Departmento de Biologia Vegetal, Universidade de Lisboa, Lisbon, Portugal3
Received 2 July 2003/ Accepted 12 September 2003
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In addition to the transcriptional control, a variety of posttranslational modifications have been shown to occur during coat formation. At least two coat-associated polypeptides (of about 8 and 9 kDa) appear to be glycosylated (11), while others are derived from proteolytic processing of larger precursors (1, 3, 27). Cross-linking of structural proteins is also believed to occur and result in the insolubilization of specific components. Since several coat proteins are tyrosine rich and since dityrosine bonds are present in purified coat material, it is believed that this type of modification may contribute to the assembly and function of the coat (13). Also (
-glutamyl)lysine cross-links are found in purified spores, and a coat-associated transglutaminase has been identified (17). The occurrence of transglutaminase-dependent cross-linking of the outermost coat layer has been suggested (12).
The initial stages in coat assembly occur early after the onset of sporulation and involve functional interactions among at least two morphogenetic proteins, both made under sigma E control. First, the SpoIVA protein localizes at the outer forespore membrane. Second, SpoIVA directs the assembly of CotE in a ring-like structure that surrounds the forespore at a distance of about 75 nm from it (6). The gap generated by the localization of SpoIVA and CotE is thought to be the site of assembly of the inner coat components. Within this region, the inner coat may correspond to the more internal sector, adjacent to the SpoIVA protein. In contrast, the outer coat proteins are assembled on the outside of the CotE structure (5, 11). Additional proteins with morphogenetic functions are needed for coat formation. SpoVID and SafA are made under sigma E control; SpoVID interacts with SafA and directs it to the forming spore and is also required to maintain the CotE ring around the forespore (5, 11, 23). In contrast CotH is a morphogenetic protein produced under sigma K control that plays a role in outer coat assembly and the lysozyme resistance of the spore and that, in conjunction with CotE, is also responsible for efficient spore germination (21, 33).
Most coat components are produced at late stages of sporulation, with some proteins, such as CotD, CotT, and CotS, targeted to the inner coat, and others, such as CotB, CotC, and CotG, directed to the outer coat (11). Of these outer coat components, CotB has been recently identified as exposed on the spore surface (7, 15).
This study focuses on the incorporation of CotC into the coat structure and on how this event is controlled by the morphogenetic protein CotH. CotC is a coat component initially identified by a reverse genetic approach (4) and later associated with the outer coat layer (32). Together with CotD and CotG, CotC represents about 50% of the total solubilized coat proteins and, being alkali soluble, can be selectively extracted from purified spores by an NaOH treatment (11). CotC is highly similar to the protein encoded by ynzH, an open reading frame identified during the analysis of the B. subtilis genome (18), and has recently been proposed as a new coat component and renamed CotU (19). CotC and CotU have almost identical N-terminal regions, diverging in only 1 out of 24 amino acid residues. In addition, CotC is also relatively similar to CotG, and, intriguingly, assembly of both CotC and CotG proteins is under the control of the morphogenetic protein CotH (21).
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(26). Bacterial strains were transformed by previously described procedures for CaCl2-mediated transformation of E. coli competent cells (26) and two-step transformation of B. subtilis (2). |
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TABLE 1. B. subtilis strains
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TABLE 2. Synthetic oligonucleotides
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Strain RH211 was obtained by transforming strain BZ213 (cotE::cat) with a linearized form of plasmid pJL62 (cat::spc) (a gift from A. Grossman) to inactivate cat and introduce a spectinomycin resistance gene. Several clones resistant to spectinomycin but sensitive to chloramphenicol were isolated, and one of them, RH211, was used for further studies.
cotC expression in E. coli. The cotC coding region was amplified by PCR from B. subtilis chromosomal DNA with primers CotCcoding and CotCSTOP (Table 2). The 210-bp PCR product was cleaved with XhoI and SalI and ligated into XhoI-digested expression vector pRSETA (Invitrogen). The recombinant plasmid carrying an in-frame fusion of the 5' end of the cotC coding region to six histidine codons under the transcriptional control of a T7 promoter was used to transform competent cells of E. coli BL21(DE3) (Invitrogen), yielding strain RH52. This strain was grown in ampicillin-supplemented (50 µg/ml) TY medium (26) to an optical density of 0.7 at 600 nm. The T7 promoter was then induced by adding isopropyl-ß-D-thiogalactopyranoside (IPTG; final concentration, 0.5 mM) to the culture, which was incubated for 2 h at 37°C. The six-His-tagged CotC protein was purified under denaturing conditions via Ni-nitrilotriacetic acid affinity chromatography as recommended by the manufacturer (Qiagen, Inc.).
Western blotting. Sporulation of wild-type and recombinant strains was induced by the exhaustion method (2, 22). After a 30-h incubation at 37°C, spores were collected, washed four times, and purified by lysozyme treatment as previously described (2, 22). The number of purified spores obtained was measured by direct counting with a Bürker chamber under an optical microscope (Olympus; BH-2 with 40x lenses). Aliquots of 1010 spores suspended in 0.3 ml of distilled water were used to extract coat proteins by 0.1 N NaOH treatment at 4°C as previously reported (2). The concentration of the extracted coat proteins was determined by the Bio-Rad DC (detergent-compatible) protein assay to avoid potential interference by the NaOH present (final concentration, 0.2 to 0.6 mN) in the extraction buffer and 15 µg of total proteins fractionated on 18% denaturing poly-acrylamide gels. Proteins were then electrotransferred to nitrocellulose filters (Bio-Rad) and used for Western blot analysis by standard procedures. For the analysis of sporulating cells samples were harvested at various times during sporulation and disrupted by sonication in 25 mM Tris (pH 7.5)-0.1 M NaCl-1 mM EDTA-15% (vol/vol) glycerol-0.1 mg of phenylmethylsulfonyl fluoride/ml. Sonicated material was then fractionated by centrifugation at 12,000 x g for 20 min. The pellet, containing the forming spores resistant to the sonication treatment, was solubilized by 0.1 N NaOH treatment at 4°C, and the total protein concentration was determined as described above. Fifty (mother cell extract) or 15 µg (forespore extract) of total proteins was fractionated on 18% denaturing polyacrylamide gels. Western blot filters were visualized by the SuperSignal West Pico chemiluminescence (Pierce) method as specified by the manufacturer.
CotC-specific antibodies were raised in rabbits immunized with a 14-amino-acid synthetic peptide (NH2-YDYVVEYKKHKKHY-COOH) designed on the base of the C-terminal region of CotC (IGtech, Salerno, Italy).
Yeast two-hybrid system.
The Matchmaker two-hybrid system (Clontech) was used as described by Ozin et al. (23), with only minor modifications. The cotC coding region was amplified by PCR using primer pair C/5/Nco and C2 (Table 2). The PCR product was digested with NcoI and EcoRI and inserted between the same sites of plasmids pAS2-1 and pACT2 (Clontech) to create fusions to the Gal4 DNA binding or activation domains, yielding plasmids pRZ99 and pRZ98, respectively. Saccharomyces cerevisiae strains Y187 (MAT
ura3-52 his3-200 ade2-101 trp1-901 leu2-3,112 gal4
met- gal80
URA3::GAL1UAS-GAL1TATA-HIS3) and Y190 (MATa ura3-52 his3-200 ade2-101 lys2-801 trp1-901 leu2-3,112 gal4
gal80
cyhr2 LYS2::URA::GAL1UAS-HIS3TATA-HIS3 URA3::GAL1UAS-GAL1TATA-HIS3) (Clontech) were independently transformed with the pAS2-1 or pACT-2 vector and/or each of the cotC constructs according to the protocols suggested by the manufacturer. The resulting clones were used in pairwise matings selecting for Leu and Trp. Colony lift assays for detection of ß-galactosidase activity were as described by the manufacturer (Clontech).
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FIG. 1. Western blot analysis of proteins extracted from spores of the wild type (lane 1), cotC (lane 2) and cotU (lane 3) null mutants, and a double cotC cotU null mutant (lane 4). Proteins were fractionated on 18% polyacrylamide gel and, upon electrotransfer on nitrocellulose membranes, were reacted with CotC-specific rabbit antibodies and then with peroxidase-conjugated secondary antibodies and visualized by the Pierce method. Molecular mass markers are indicated on the right. The estimated sizes of the polypeptides recognized by the CotC-specific antibody are also indicated.
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Expression of cotC in E. coli produces two polypeptides. The cotC gene was fused to codons for a six-His tag at its 5' end, placed under the control of the T7lac promoter, and introduced into cells of the E. coli host BL21(DE3) (Novagen). Cells of the recombinant strain obtained, RH52, were induced with IPTG and lysed as described in Materials and Methods, and total proteins were purified by affinity chromatography on Ni2+ columns. As shown in Fig. 2, two polypeptides of 16 and 32 kDa were purified and both were recognized by CotC-specific and six-His tag-specific antibodies. We identify the 16-kDa polypeptide as the six-His-CotC fusion product (4.5 and 8.8 kDa, respectively, with the latter migrating with an apparent mass of 12 kDa; Fig. 1), whose expected apparent mass is 16.5 kDa. The slower-migrating CotC polypeptide, with an apparent mass of 32 kDa (Fig. 2), is most easily explained if two CotC molecules are bound together. Based on this, we suggest that the faster-migrating protein corresponds to the monomeric form of CotC, whereas the slower one results from the assembly of CotC monomers into a homodimer. Cases of dimers and also oligomers resistant to detergent treatment and strong reducing conditions have been reported previously and are rather frequent (25, 28, 29).
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FIG. 2. Coomassie-blue stained SDS-PAGE gel and Western blots of crude extracts (Ext.) and Ni-nitrilotriacetic acid agarose column-purified proteins (Pur.) of the IPTG-induced E. coli RH52 strain. Proteins were fractionated on 18% polyacrylamide gel and visualized by Coomassie blue staining of the gel or used to perform Western blot analysis with anti-CotC- or anti-six-His-specific antibodies, as indicated. Molecular mass markers are indicated on the right. The estimated sizes of CotC-dependent polypeptides are also reported.
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Assembly of all CotC-dependent polypeptides depends on cotH and cotE expression. Spores of strains carrying a cotU null mutation along with a null mutation in one other cot gene were solubilized by NaOH treatment, and the released proteins were compared with those released by a strain with mutations only in cotU (Fig. 3). This analysis showed that CotC-dependent polypeptides of 30, 21, 12.5, and 12 kDa were all present in the cotU single mutant as well as in the cotU cotA, cotU cotB, and cotU cotG double mutants. All four cotC-dependent polypeptides were absent in strains with double-null mutation cotU cotH or cotU cotE (Fig. 3, lanes 5 and 7, respectively). Moreover, the amount of the 30-kDa polypeptide extracted from cotU cotB mutant spores (Fig. 3, lane 6) was repeatedly less than that extracted from spores with cotU mutations only (Fig. 3, lane 2). Identical results were obtained in the single null mutant strains with mutations in cotA, cotB, cotG, cotH, or cotE (not shown), thus suggesting that assembly of all four cotC-dependent polypeptides in the spore coat strictly requires cotE and cotH expression and that, in addition, assembly of the 30-kDa polypeptide is partially dependent on cotB expression.
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FIG. 3. Western blot of proteins extracted from spores of cotC cotU (lane 1), cotU (lane 2), cotA cotU (lane 3), cotG cotU (lane 4), cotH cotU (lane 5), cotB cotU (lane 6), and cotE cotU (lane 7) mutants. Proteins were fractionated on 18% polyacrylamide gel and, upon electrotransfer on nitrocellulose membranes, were reacted with CotC-specific rabbit antibodies and then with peroxidase-conjugated secondary antibodies and visualized by the Pierce method. Molecular mass markers are indicated on the right. The estimated sizes of CotC-dependent polypeptides are also reported.
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FIG. 4. Western blot of proteins extracted at various times after the onset of sporulation from the mother cell or forespore of sporulating cells of a cotU null mutant strain. Fifty (mother cell extract) or 15 µg (forespore extract) of total proteins was fractionated on 18% polyacrylamide gel, and upon electrotransfer on nitrocellulose membranes, proteins were reacted with CotC-specific rabbit antibodies and then with peroxidase-conjugated secondary antibodies and visualized by the Pierce method. Molecular mass markers are indicated. The estimated sizes of CotC-dependent polypeptides are also reported.
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FIG. 5. (A) Western blot of proteins extracted from mature spores of a cotU null mutant strain and from the mother cell fraction of sporulating cells of a cotE mutant strain, 8 (t8) and 10 h after the onset of sporulation. (B) Western blot of proteins extracted 8, 9, 10, and 11 h after the onset of sporulation from the mother cell of sporulating cells of a cotH null mutant strain. (C) Western blot of proteins extracted 10 h after the onset of sporulation from the mother cell of sporulating cells of a cotH null mutant strain. Fifty (mother cell extract) or 15 µg (forespore extract) of total proteins was fractionated on 18% polyacrylamide gel and, upon electrotransfer onto nitrocellulose membranes, proteins were reacted with CotC-specific (A and B) or CotA-specific (C) rabbit antibodies and then with peroxidase-conjugated secondary antibodies and visualized by the Pierce method. Molecular mass markers are indicated. The estimated sizes of CotC-dependent polypeptides are also reported.
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CotC assembly depends on cotE and cotH expression. Dependency on cotE was expected, since it has been previously shown that cotE null mutant spores do not assemble the outer coat (31). Dependency on cotH expression was previously reported for the most abundant 12-kDa CotC form (21). Assembly of two other coat components, CotB and CotG, also depends on cotH expression. Since assembly of CotB, in turn, depends on cotG expression (24), hierarchical control CotH-CotG-CotB was proposed (21). Here we show (Fig. 3) that all four CotC polypeptides strictly require cotE and cotH expression and do not depend on the expression of the cotA, cotB, or cotG gene and that only the 30-kDa form has a partial requirement for cotB expression.
Western blotting performed at various times during sporulation with the wild type and cotH and cotE mutants allowed three conclusions. (i) The 12- and 21-kDa CotC forms are assembled on the forming spore immediately after their synthesis in the mother cell compartment. This is based on the observation that the 12- and 21-kDa forms accumulate in the mother cell of a cotE mutant (unable to assemble them) but not in the mother cell of wild-type spores. (ii) The 12.5- and 30-kDa forms of CotC are generated on the forming spore coat, since they are never found in the mother cell of wild-type or cotE mutant cells. Their formation is most likely due to specific posttranslational modifications of the previously assembled forms of 12 and 21 kDa. The nature of such modifications has not been clarified. However, since CotC contains several tyrosines (30.3% of total residues) and since dityrosine bond formation may be involved in coat assembly (reference 13 and references therein), it is possible that this type of cross-link is, at least in part, responsible for the formation of the 12.5- and 30-kDa forms of CotC. (iii) CotH or a cotH-controlled factor allows assembly of the 12- and 21-kDa forms of CotC on the spore surface. This is based on the observation that the 12- and 21-kDa forms do not accumulate in the mother cell of a cotH mutant. Since CotC is present in the cytoplasm of a cotE mutant (Fig. 5A) as well as in E. coli (Fig. 2) but is not found in the cytoplasm of a cotH mutant (Fig. 5B), its absence cannot be due to the low stability of the protein. We believe it more likely that a specific factor (possibly a protease) degrades CotC in the absence of CotH (or a cotH-dependent protein). According to this model, in a wild-type strain CotH (or a cotH-dependent protein) would prevent CotC degradation either by interacting in a chaperone-like manner with CotC or its specific protease in the mother cell or by immediately recruiting CotC into the coat of the forming spore. Either way, CotC is not present in the mother cell or on the forespore of a cotH mutant. Our data do not allow us to establish whether CotC is degraded or is only cleaved near its C-terminal end, making it undetectable for our antibodies. However, such hypothetical cleavage does not occur in a wild-type strain and would in any case lead to a nonphysiological situation (i.e., assembly of a shorter form of CotC).
Present address: Gulbenkian Institute of Science, Oeiras, Portugal. ![]()
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-crystallin family of stress proteins, is induced during development and participates in spore outer coat formation. J. Bacteriol. 179:1887-1897.
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-Glutamyl)lysine cross-links of spore coat proteins and transglutaminase activity in Bacillus subtilis. FEMS Microbiol. Lett. 144:157-160.[CrossRef]
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