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Journal of Bacteriology, January 2005, p. 358-365, Vol. 187, No. 1
0021-9193/05/$08.00+0 doi:10.1128/JB.187.1.358-365.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
School of Biological Sciences, University of Manchester, Manchester, United Kingdom,1 Institute of Cell and Molecular Biology, University of Edinburgh, Edinburgh, Scotland,2 Department of Biology, American University of Beirut, Beirut, Lebanon3
Received 2 June 2004/ Accepted 17 September 2004
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Ser109 for ftsZ6460, Ala129
Thr129 for ftsZ972, Val157
Met157 for ftsZ2066, Pro203
Leu203 for ftsZ9124, and Ala239
Val239 for ftsZ2863) are distributed throughout the FtsZ core region, and all confer a lethal cell division block at the nonpermissive temperature of 42°C. In each case the division block is associated with loss of Z-ring formation such that fewer than 2% of cells show Z rings at 42°C. The ftsZ9124 and ftsZ6460 mutations are of particular interest since both result in abnormal Z-ring formation at 30°C and therefore cause significant defects in FtsZ polymerization, even at the permissive temperature. Neither purified FtsZ9124 nor purified FtsZ6460 exhibited polymerization when it was assayed by light scattering or electron microscopy, even in the presence of calcium or DEAE-dextran. Hence, both mutations also cause defects in FtsZ polymerization in vitro. Interestingly, FtsZ9124 has detectable GTPase activity, although the activity is significantly reduced compared to that of the wild-type FtsZ protein. We demonstrate here that unlike expression of ftsZ84, multicopy expression of the ftsZ6460, ftsZ972, and ftsZ9124 alleles does not complement the respective lethalities at the nonpermissive temperature. In addition, all five new mutant FtsZ proteins are stable at 42°C. Therefore, the novel isolates carrying single ftsZ(Ts) point mutations, which are the only such strains obtained since isolation of the classical ftsZ84 mutation, offer significant opportunities for further genetic characterization of FtsZ and its role in cell division. |
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The timing of the arrival at the division site of these proteins is thought to reflect the order in which they are involved during cell division (4, 13, 22, 30). An exception is FtsW, which has been ascribed either an early (10, 24) or late (35) role in the division process. Recent data demonstrating a direct in vitro interaction between Mycobacterium tuberculosis FtsW and FtsZ (16) points to an early role for FtsW, at least in actinobacterial species, which interestingly have neither ftsA nor zipA genes (33, 55).
FtsZ is both a structural and functional homologue of eukaryotic tubulins (26, 39, 43, 50, 54), in that it has a high GTPase activity and is able to polymerize in vitro in a GTP-dependent fashion into higher-order structures (3, 48). Although many biochemical and biophysical properties of FtsZ and FtsZ polymers have been characterized, crucial questions concerning the mechanism of Z-ring nucleation and constriction remain unanswered (48). Conditional mutations in ftsZ have proven to be difficult to isolate in vivo, and of the two such mutants which exist, the ftsZ84 and ftsZ26 mutants (8), only the former is due to a single amino acid change. Furthermore, it has been demonstrated that mild overexpression of ftsZ84 provides complementation of its lethal cell division defect (44). Therefore, suppressor and complementation studies are most likely to identify previously characterized mechanisms by which ftsZ expression levels can be modified rather than novel interactions with accessory proteins (6, 7, 15, 20, 42, 46, 57). Even so, analysis of the ftsZ84 allele has contributed significantly to our knowledge of FtsZ function. For example, we know that the high GTPase activity of FtsZ detected in vitro (17, 37, 47) is not essential for the in vivo function of FtsZ (28). This is because the ftsZ84 allele, which confers significantly reduced GTPase activity in vitro (17, 47), resulting in a less dynamic Z ring in vivo (54), can nevertheless support essentially normal cell division at the permissive temperature (2).
We therefore chose to isolate new temperature-sensitive (Ts) ftsZ mutants with the aim of identifying alleles with different properties than ftsZ84, which may be of use in genetic dissection of FtsZ function. Using P1-mediated, localized mutagenesis, we isolated six temperature-sensitive ftsZ mutant strains of E. coli; five of the mutations result in different single amino acid changes in the FtsZ protein. In this paper we describe characterization of the new mutants, including DNA sequencing, determination of FtsZ localization patterns at permissive and restrictive temperatures, and polymerization and GTPase assays of purified mutant proteins (FtsZ6460 and FtsZ9124) which have polymerization defects in vivo at the permissive temperature. We also present data on the stability of the new FtsZ proteins and the results of tests of the ability of each allele, when overexpressed, to complement its own lethality at 42°C.
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DE3)/pLysS was used for overexpression of ftsZ alleles with T7 promoter expression vectors. The media used were Oxoid nutrient agar, LB (Luria-Bertani medium containing 10 g of Oxoid tryptone per liter, 5 g of yeast extract per liter, and 10 g of NaCl per liter), and LBNS (LB without added NaCl). Oxoid bacteriological agar no. 1 was added to a final concentration of 1.5% when needed. Isolation of ftsZ(Ts) mutants. We used P1-mediated localized mutagenesis as described previously (24) to target mutagenesis to the chromosomal region close to the ftsZ gene. A P1 lysate prepared from strain MGzac284::Tn10 was mutagenized with hydroxylamine and then used to transduce strain W3110 to tetracycline resistance (Tetr). Tetr transductants were screened for temperature-sensitive growth by patching them onto nutrient agar (Oxoid) plates at 30 and 42°C. Temperaure-sensitive isolates were examined by phase-contrast microscopy, and the isolates showing an fts phenotype, characterized by the formation of long aseptate filaments at 42°C, were transformed with plasmid pT7-3Z (see below) to test for complementation. The mutants which were complemented by pT7-3Z at 42°C were designated ftsZ(Ts).
Construction of plasmids.
Plasmid pT7-3Z was constructed by cloning a 1.8-kbp HindIII/ClaI fragment (containing the 3' end of ftsA, all of ftsZ, and the 5' end of envA) into the HindIII/ClaI sites in the polylinker of pT7-3 (a gift from Stan Tabor, Harvard Medical School). Plasmid pT7-3Z provides low-level expression of ftsZ (see below) from an endogenous promoter(s) in the distal portion of ftsA, as well as inducible, high levels of ftsZ expression when it is transformed into strain BL21(
DE3)/pLysS. Plasmids pT7-3Z and pKD126 (14, 41) were altered to encode mutant FtsZ proteins by site-directed mutagenesis by using a QuikChange kit (Stratagene) according to the manufacturer's instructions. The ftsZ genes from each of the resultant plasmids (pT73Z-972, pT73Z-2066, pT73Z-2863, pT73Z-6460, pT73Z-9124, pKD126-6460, and pKD126-9124) were sequenced to confirm the presence of the intended mutation and to rule out secondary mutations. The pKD126-6460 plasmid was unstable, since multiple attempts to amplify DNA from an original small-scale preparation resulted in the appearance of new mutations in the ftsZ gene. Hence, pT73Z-6460 was used for overexpression of FtsZ6460 for purification (Table 1).
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TABLE 1. In vitro properties of FtsZ6460 and FtsZ9124 compared to those of wild-type FtsZ
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Immunofluorescence localization of FtsZ. Localization of the FtsZ protein in fixed cells was performed as described previously (2), except that the primary and secondary antibodies were mouse monoclonal anti-FtsZ antibody (F168-12 at a 1/1,000 dilution; a generous gift from N. Nanninga [18]) and goat anti-mouse immunoglobulin G antibody conjugated to ALEXA 488 (1/500 to 1/200 dilution; Molecular Probes), respectively. Log-phase cultures at 30°C or 75 min after a shift to 42°C were prepared for immunofluorescence as described previously (2). Slides were examined by using a Leica DMRXA microscope with a x100 Plan fluotar objective and filter sets suitable for 4',6'-diamidino-2-phenylindole (DAPI), fluorescein isothiocyanate, and Texas Red. Images were initially captured with a Coolsnap FX charge-coupled device camera (Roper Scientific) by using the MetaVue software (Universal Imaging) and then were processed with Adobe Photoshop.
Expression and purification of FtsZ proteins.
The FtsZ9124 protein was expressed from pKD126-9124, as previously described for wild-type FtsZ (41, 52). FtsZ6460 was expressed by induction of a culture of BL21(
DE3)/pLysS containing plasmid pT73Z-6460 at an A600 of 0.3 with 0.5 mM isopropyl-ß-D-thiogalactopyranoside (IPTG) for 2 h. FtsZ9124 was initially purified as previously described for wild-type FtsZ protein (52). It was found that a substantial amount of the FtsZ9124 protein was lost during the 20% ammonium sulfate precipitation step; therefore, a second preparation in which the 20% ammonium sulfate precipitate was not discarded was produced. FtsZ6460 was purified by both methods described above (i.e., with and without the 20% ammonium sulfate step). Wild-type FtsZ was prepared to directly mimic each combination of expression system and purification method outlined above in order to allow fair comparisons of the biochemical properties of wild-type and mutant proteins. The concentration of FtsZ protein was measured by the Bio-Rad protein assay by using bovine serum albumin as a standard and a conversion factor of 0.82 as described previously (27).
Light-scattering assay. Right-angle light scattering was measured as previously described (52) by using a Cary Eclipse fluorescence spectrophotometer with both the excitation and emission wavelengths set at 350 nm and at a constant temperature of 30°C (provided by a thermostat-controlled cuvette holder). Unless stated otherwise, a 125-µl reaction mixture consisting of 50 mM morpholineethanesulfonic acid (MES)-NaOH (pH 6.5), 10 mM MgCl2, 50 mM KCl, 0.25 mM GTP, and 8.3 µM FtsZ protein (wild type or mutant) was initially prepared without the GTP. This mixture was transferred to a prewarmed cuvette, and once a consistent baseline level of light scattering was obtained, 10 µl of 3.13 mM GTP was added, the sample was mixed thoroughly, and light scattering was monitored thereafter. Polymerization was deemed to have occurred (Table 1) if there was an increase in light scattering (52) which then returned to baseline levels upon GTP hydrolysis. In practice, no light scattering was observed for any of the mutant FtsZ preparations (data not shown).
Electron microscopy. Negative-stain electron microscopy was performed as described previously (52). Samples were taken from polymerization reaction mixtures before and 1 and 10 min after GTP addition. This was done in the presence of either 10 mM calcium or 6 mg of DEAE-dextran per ml, as described previously (28). Polymerization was deemed to have occurred if any linear, curved, bundled, sheet- or tube-shaped polymers were observed on at least two squares of a grid. In practice, no polymeric structures were observed on multiple grid squares from both times for any of the mutant protein preparations tested (Table 1 and data not shown).
GTP binding assay.
Reaction mixtures (10 µl) containing 50 pmol of wild-type FtsZ, FtsZ9124, and FtsZ6460 proteins (we used preparations in which the 20% ammonium sulfate precipitate was discarded) and 20 µCi of [
32P]GTP in binding buffer (50 mM Tris-HCl [pH 7.9], 50 mM KCl, 1 mM EDTA) were incubated for 10 min on ice. The reaction mixtures were subjected to irradiation at 254 nm for 10 min (UVIlink CL508 cross-linker; Uvitec) on Parafilm on top of an ice-cold metal block and then added to 10 µl of 10 mM GTP in binding buffer on ice. Ten microliters of 0.1% Surfact-Amps X-100 [Pierce & Warriner (UK) Ltd.] and then 300 µl of 20% tricarboxylic acid were added to each mixture, which was mixed vigorously and then incubated on ice for 30 min. Precipitated protein was pelleted by centrifugation in a microcentrifuge for 10 min, and the supernatant was discarded. The pellet was then washed with 300 µl of 10% of tricarboxylic acid, followed by 300 µl of 80% acetone. The pellet was air dried briefly and then resuspended in 1x SDS-PAGE sample buffer containing 5 mM GTP. After heating at 65°C for 15 min, samples were separated by SDS-PAGE on a 10% acrylamide gel, which was then stained with Coomassie blue. Cross-linking of radioactive GTP to proteins was assessed by autoradiography.
GTPase assays.
GTPase activity was measured by thin-layer chromatography by using [
-32P]GTP (Amersham) as described previously (52). The GTPase activity of mutant FtsZ proteins was expressed both in moles of GTP hydrolyzed per mole of protein per minute and as a percentage of the activity of wild-type FtsZ purified under similar conditions (Table 1).
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We described the locations of the mutations with reference to the three-dimensional structure of Methanococcus jannaschii FtsZ1 (26) by using primary sequence and secondary structure alignments of the sequence and the E. coli FtsZ sequence (data not shown). The ftsZ972, ftsZ2066, and ftsZ6460 mutations are in the amino-terminal domain of the FtsZ core region (55), and ftsZ2863 is in the carboxy-terminal domain of the core region; ftsZ9124 is essentially at the junction between the two domains.
The ftsZ6460 allele encodes a glycine-to-serine change at residue 109 (G109S), and therefore the glycine-rich motif which is directly involved in GTP binding and hydrolysis is disrupted. This residue is invariant in 228 full-length FtsZ sequences from bacteria, archaea, and eukaryotes (55), indicating its importance for FtsZ function. It is not surprising, therefore, that ftsZ6460 resulted in the most severe phenotype of all five new mutations described here (see below). The A129T mutation encoded by ftsZ972 falls in strand 5. This is a well-conserved residue since of 228 full-length FtsZ sequences, 15 have serine at this position and all others have either glycine or alanine (55). The ftsZ2066 mutation encodes V157M and lies in a turn between helix 4 and strand 6. This is a well-conserved residue in bacterial FtsZ sequences (55). The ftsZ9124 mutation encodes P203L and is of interest due to its position between helix 5 of the amino-terminal domain and helix C1, the first
-helix of the carboxy-terminal domain. While not particularly well conserved, proline is by far the most frequent residue at this position in FtsZ sequences (55). The ftsZ2863 mutation (A239V) is the only one of the six mutations which falls in an
-helix (namely, helix C2) of the carboxy-terminal domain encoding the FtsZ core region. This residue is extremely well conserved, and only four bacterial FtsZs have amino acids other than alanine at this position (55).
Four of the mutant alleles imparted classic cell division mutant phenotypes, in that cells grew as short rods at the permissive temperature of 30°C but exhibited uniform extensive filamentation at 42°C in liquid media (Fig. 1). The exception was the ftsZ6460 allele, which imparted a moderate filamentation phenotype at 30°C and extensive, lethal filamentation at 42°C, suggesting that the ftsZ6460 mutation severely damages the function of the FtsZ protein, even at 30°C.
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FIG. 1. Temperature-sensitive phenotype of the ftsZ2863(Ts) mutant strain: immunolocalization of FtsZ at 30°C (A) and 42°C (B). Results similar to those shown in panel A were obtained with ftsZ972and ftsZ2066 at 30°C, and results similar to those shown in panel B were obtained with all strains at 42°C (data not shown). Scale bar = 10 µm.
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FIG. 2. Mislocalization of FtsZ9124: representative images showing immunolocalization of FtsZ (A, C, E, and G) alongside phase-contrast images (B, D, F, and H). The images show examples of unusual FtsZ localization, including two adjacent Z structures (A [left cell] and E), slanted Z structures (A [right cell]), and single Z spots (C [left cell] and G [left cell]). Scale bars = 2 µm.
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FIG. 3. Mislocalization of FtsZ6460: FtsZ spiral formation at 30°C in strains expressing the FtsZ6460 allele. In the composite pseudocolored image DAPI staining is indicated by blue and FtsZ immunolocalization is indicated by green. Scale bar = 10 µm.
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TABLE 2. Plating efficiencies of new ftsZ(Ts) mutants
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FIG. 4. Stability of FtsZ mutant proteins under nonpermissive conditions. Lysates from ftsZ mutant strains (allele numbers are indicated) and W3110 (wt) were obtained at 30°C and 60 min after a shift to 42°C in LBNS. Loading was equalized relative to the optical densities at 600 nm of the cultures. The relative levels of FtsZ were calculated by comparison to a dilution series for a W3110 lysate run on the same gel. Pencil lines indicating marker positions were cropped from each blot image after all image processing. With the exception of the ftsZ26 mutation (included as an extra control), the levels of mutant proteins were slightly higher at 42°C than at 30°C. The ratios of the level at 42°C to the level at 30°C are shown in Table 2.
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We initially tested for GTP-dependent polymerization of FtsZ proteins using right-angle light scattering (38). While wild-type FtsZ polymerized efficiently upon addition of GTP to the polymerization reaction mixture, regardless of the purification protocol used, no preparations of either FtsZ6460 or FtsZ9124 were able to polymerize under the same conditions (Table 1). We therefore performed light-scattering assays for polymerization in the presence of 10 mM calcium, conditions which enhance the polymerization signal by promoting polymer bundling and reducing polymer turnover (34, 38, 51, 52, 60). Again, no polymerization was detected from either of the mutant proteins, whereas wild-type preparations readily formed polymers under the same conditions (Table 1).
In order to test whether polymers too small for detection by light scattering were being formed by the mutant proteins, we observed polymerization mixtures by negative stain electron microscopy in the presence and absence of calcium or DEAE-dextran. Once again, polymers from FtsZ9124 or FtsZ6460 were not observed under conditions in which wild-type FtsZ produced polymers and polymer bundles (10 mM calcium) and polymer tubes (DEAE-dextran) (Table 1 and data not shown). We concluded that neither FtsZ6460 nor FtsZ9124 is capable of GTP-induced polymerization in vitro at 30°C.
Initially, we noted that preparations of both FtsZ6460 and FtsZ9124 had measurable GTPase activity (Table 1). Compared to the activity of wild-type FtsZ purified under similar conditions, these activities were significantly reduced (13 to 42% of the activity of the wild-type protein purified under similar conditions). Binding assays with purified FtsZ6460 and FtsZ9124 with wild-type FtsZ as a control demonstrated that both mutant proteins were able to bind GTP (data not shown) but at lower levels than the wild type. The only protein which exhibited GTP binding in the FtsZ9124 preparation was FtsZ9124 itself. In contrast, a major contaminating GTP binding protein with a molecular mass of approximately 20 kDa was present in the FtsZ6460 preparation. We concluded, therefore, that the GTPase activity detected from FtsZ9124 was genuine, whereas the GTPase activity of FtsZ6460 preparations was due at least in part to a contaminant.
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Each of the mutations which we describe here is located at conserved residues in the FtsZ-encoding core region. Although none of these residues has been targeted for specific mutagenesis in recent studies (28, 58), we can in some cases compare the new mutations to previously characterized alterations of adjacent amino acids. The ftsZ6460 allele (G109S) is particularly interesting in this respect. The glycine at position 109 is completely conserved in all available FtsZ sequences (55) and makes contact with the guanine nucleotide (26). The extreme phenotype encoded by the ftsZ6460 mutation in vivo and the lack of polymerization (and GTPase) activity of purified FtsZ6460 are therefore not surprising. In fact, ftsZ6460 imparts a phenotype intermediate between the phenotypes imparted by two adjacent, previously characterized mutant alleles. The ftsZ3 mutation (T108A) results in a protein which is nonfunctional for division in vivo and lacks both GTP binding and GTPase activities in vitro (14, 40). In contrast, E. coli cells with the ftsZ84 mutation (which also changes a glycine that is in close contact with the guanine nucleotide to serine; G105S) are essentially normal at the permissive temperature (2, 54). The ftsZ84 mutation reduces the GTPase activity substantially, but FtsZ84 can still polymerize in vitro with the aid of DEAE-dextran (28). In contrast, FtsZ6460 shows no detectable ability to polymerize in vitro (Table 1). It should be noted that overexpression of FtsZ6460 is extremely deleterious to E. coli cells (see Results).
Site-directed mutagenesis of neighboring residues of both ftsZ2066 and ftsZ2863 has been characterized previously. The D158A, E238A (28, 53), and D158N (56) mutations resulted in FtsZ proteins with properties very similar to those of the wild type, in contrast to the mutants described here, which are temperature sensitive in vivo. The ftsZ9124 allele encodes P203L at the junction between the amino- and carboxy-terminal domains of FtsZ (26) and as such may have a significant effect of the overall structure of the protein. However, this mutation is also adjacent to the synergy loop (19), which is critical for the GTPase activity of FtsZ. Mutations in this loop reduce GTPase activity significantly but have variable effects on polymerization ability (28, 51, 56).
The ftsZ6460 phenotype at the permissive temperature is very similar to the ftsZ26 phenotype. Each mutant produces both normal and aberrant Z rings. Interestingly, the aberrant Z rings are often able to constrict, but this (together with some aborted constriction events) leads to misshapen cells (5, 8). At present, there are no published biochemical data on the FtsZ26 protein, but our data suggest that it may be less stable at the nonpermissive temperature (Fig. 4).
The subtle ftsZ9124 phenotype at the permissive temperature is reminiscent of partial rings observed in FtsZ84 mutant cells recovering from a temperature shift (2) and likely represents either slow or aborted Z-ring formation in the cells. Although the partial structures were observed in multiple experiments with ftsZ9124 in both the W3110 and C600 backgrounds (data not shown), we cannot completely discount the possibility that FtsZ9124 rings might be more fragile than wild-type rings and hence more likely to be disrupted by the immunofluorescence procedure.
Observation of BL21(
DE3)/pLysS carrying each of the pT73Z derivatives (the wild type and all of the new mutants) revealed the presence of small numbers of minicells (data not shown). This indicates that each of the mutant proteins is able to combine with wild-type FtsZ to drive extra divisions, when it is overexpressed to a small extent (Table 2). In addition, the fact that each mutant strain divides at the permissive temperature indicates that mutant proteins are capable of GTP binding, GTP hydrolysis, and polymerization in vivo. The discrepancy between in vivo and in vitro properties of proteins such as FtsZ6460 suggests that other factors (e.g., accessory proteins, macromolecular crowding) maximize the FtsZ function in vivo. However, in the light of current models of FtsZ polymerization (48, 50), we surmised that FtsZ9124 at least is capable of dimerization and possibly some small degree of polymerization in vitro.
The behavior of the FtsZ proteins in vivo is summarized in Table 2. While ftsZ2066 and ftsZ2863 showed partial self-complementation when they were overexpressed, ftsZ972, ftsZ6460, and ftsZ9124 failed to do this. Attempts to complement the ftsZ972, ftsZ6460, and ftsZ9124 alleles with derivatives of pKD126 were unsuccessful. In contrast, we were able to demonstrate clearly the ability of ftsZ84 to self-complement fully when it was present at double the normal level in the cell (Table 2). Furthermore, it is evident that the temperature-sensitive behavior of all the FtsZ mutant proteins is due to loss of function and not to instability at 42°C (Fig. 4).
We demonstrated, therefore, that in combination with predictive and selective strategies (8, 15, 23, 28, 31, 51, 56, 58, 59), an essentially random mutagenesis approach is productive even when the three-dimensional structure of a well-characterized protein is known. The new ftsZ alleles, particularly ftsZ972, ftsZ6460, and ftsZ9124, provide invaluable tools in the search for unique functional suppressors when classical genetics are used, especially since the overexpression of these alleles appears to be deleterious. We expect that further characterization of the novel mutants, as well as suppressor studies, should enhance our knowledge of FtsZ function in vivo.
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