Previous Article | Next Article 
Journal of Bacteriology, January 2005, p. 37-44, Vol. 187, No. 1
0021-9193/05/$08.00+0 doi:10.1128/JB.187.1.37-44.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Timing and Localization of Rhamnolipid Synthesis Gene Expression in Pseudomonas aeruginosa Biofilms
Yannick Lequette and
E. P. Greenberg*
Department of Microbiology and W. M. Keck Microbial Communities and Cell Signalling Program, Carver College of Medicine, University of Iowa, Iowa City, Iowa
Received 19 May 2004/
Accepted 16 August 2004

ABSTRACT
Pseudomonas aeruginosa biofilms can develop mushroom-like structures
with stalks and caps consisting of discrete subpopulations of
cells. Self-produced rhamnolipid surfactants have been shown
to be important in development of the mushroom-like structures.
The quorum-sensing-controlled
rhlAB operon is required for rhamnolipid
synthesis. We have introduced an
rhlA-gfp fusion into a neutral
site in the
P. aeruginosa genome to study
rhlAB promoter activity
in rhamnolipid-producing biofilms. Expression of the
rhlA-gfp fusion in biofilms requires the quorum-sensing signal butanoyl-homoserine
lactone, but other factors are also required for expression.
Early in biofilm development
rhlA-gfp expression is low, even
in the presence of added butanoyl-homoserine lactone. Expression
of the fusion becomes apparent after microcolonies with a depth
of >20 µm have formed and, as shown by differential
labeling with
rfp or fluorescent dyes,
rhlA-gfp is preferentially
expressed in the stalks rather than the caps of mature mushrooms.
The
rhlA-gfp expression pattern is not greatly influenced by
addition of butanoyl-homoserine lactone to the biofilm growth
medium. We propose that rhamnolipid synthesis occurs in biofilms
after stalks have formed but prior to capping in the mushroom-like
structures. The differential expression of
rhlAB may play a
role in the development of normal biofilm architecture.

INTRODUCTION
Pseudomonas aeruginosa is an opportunistic pathogen that can
cause acute infections or chronic biofilm infections (
3,
5,
6,
16,
35). In part because it is an emerging pathogen (
33),
the biology of
P. aeruginosa biofilms has received increasing
attention recently.
At least under specific laboratory conditions, P. aeruginosa biofilm development involves a number of discrete steps. First, individual cells attach to a surface. This is followed by the formation of microcolonies on the surface. Finally, the microcolonies mature into mushroom-like structures in which the cells are embedded in a self-produced extracellular polymeric matrix (6, 20). We have begun to learn about genes involved in the development of normal biofilm structures. The development of mushroom-like structures is dependent upon the available carbon and energy source (19). A recent report showed that the mushroom-like structures consist of stalks on which caps form. Cap production requires a form of surface movement called twitching motility (18). Apparently, cells in the stalk do not move and a subpopulation of cells use twitching motility to migrate up the stalk and form a cap. Quorum sensing influences the ability of P. aeruginosa to develop stalks, so that quorum-sensing mutants form a thin, rather uniform layer on surfaces (8). Furthermore, P. aeruginosa produces extracellular rhamnolipid surfactants, and the synthesis of these rhamnolipids is controlled by quorum sensing (25). Rhamnolipid synthesis mutants form abnormal unstructured biofilms and may show enhanced dispersal from surfaces (7). The involvement of rhamnolipids in biofilm formation in part could explain why quorum sensing influences biofilm development.
We have focused this study on rhamnolipid synthesis gene expression in biofilms, because quorum sensing controls rhamnolipid synthesis and because rhamnolipid synthesis influences biofilm development. There are two P. aeruginosa acyl-homoserine lactone (HSL) quorum-sensing systems that govern the expression of hundreds of genes (12, 31, 36). LasR is a transcription factor that responds to the LasI-generated signal, N-(3-oxoododecanyl)-HSL (3OC12-HSL), and RhlR is a transcription factor that responds to the RhlI-generated signal, N-butanoyl-HSL (C4-HSL) (11, 21, 27, 28, 37, 40). The rhamnolipid synthesis operon rhlAB is among the functions controlled by quorum sensing (22, 25, 29). The rhlAB operon shows a large response to C4-HSL but the specificity is not absolute, and it also shows a significant response to 3OC12-HSL (31, 38). Furthermore, the expression of the rhlAB operon occurs as planktonic cultures enter stationary phase, and the lag in expression is not reduced by the addition of 3OC12-HSL and C4-HSL (22, 29, 31, 39).
Here we investigate the timing and location of rhlAB expression in P. aeruginosa biofilms. A previous study indicated that both lasI and rhlI were preferentially expressed in cells near the base of mature biofilms (9). We did not understand that mushroom-like structures consisted of stalks and caps at the time of this earlier publication, but the results are consistent with expression of these genes in stalks. These genes are not only required for acyl-HSL synthesis but also they are themselves controlled by quorum sensing (30). This suggested that we might observe differential expression of the rhlAB operon in biofilms. We present evidence indicating this operon is expressed primarily in the stalks of mushroom-like structures. The transcription of the rhlAB operon seems to commence at the time stalks are beginning to form.

MATERIALS AND METHODS
Bacterial strains, plasmids, and media.
The bacterial strains and plasmids used in this study are listed
in Table
1. Planktonic cultures were grown in a tryptic soy
broth (Difco) at 37°C. Antimicrobial agents were used as
appropriate at the following concentrations (per milliliter):
for
P. aeruginosa, carbenicillin (150 µg), tetracycline
(200 µg), and HgCl (15 µg); for
Escherichia coli,
ampicillin (50 µg), tetracycline (50 µg), and kanamycin
(50 µg). Where indicated, 10 µM C4-HSL (unless otherwise
specified) or 0.2%
L-arabinose was added to the culture medium
and was present throughout the course of an experiment.
P. aeruginosa does not use
L-arabinose as an energy source. Furthermore, inclusion
of
L-arabinose in the medium for growth of biofilms containing
reporters other than the arabinose-controlled
gfp did not influence
results (data not shown). The
rhlA-gfp fusion strains were constructed
as follows: a fragment containing the
rhlAB promoter was amplified
from
P. aeruginosa PAO1 chromosomal DNA by PCR with 5'-CCTGGGCAAGAGCACCTACG-3'
and 5'-TGGTTGTCTGAAAGCGCGGC-3' as primers. The PCR product was
digested with BglII and SmaI and ligated with BamHI-SmaI-digested
pUC19 to give pYL120. The cloned fragment is 628 bp and extends
from 551 bp upstream of the
rhlA translational start. An EcoRI
-HindIII
fragment of pYL120 was cloned in front of the promoterless
gfp in pPROBE AT (
24) to generate the
rhlA-gfp fusion vector pYL121.
A pYL121 HindIII
-SspI fragment containing the
rhlA-gfp fusion
was cloned into HindIII
-SspI
-digested mini-
CTX-lacZ (
1) to yield
pYL122, which was used to insert the
rhlA-gfp fusion into the
chromosomal
attB sites of the
P. aeruginosa strains used in
this study as described previously (
14,
15). To construct the
araC-P
bad-
gfp fusion, a 1.35-kb SalI-EcoRI fragment containing
araC and the p
bad promoter was cloned into pPROBE AT, yielding
pYL182. A 2.1-kb NsiI fragment was cloned into PstI-digested
mini-CTX-Gm to yield pYL183, which was used to insert the fusion
in the chromosome.
rhlA-gfp and
araC-P
bad-
gfp direct the synthesis
of a stable, bright green fluorescent protein (GFP) called GreenTIR
(
24). To construct pYL125, we inserted a 1.4-kb EcoRI-HindIII
fragment from pUO103 into EcoRI-HindIII-digested pUCP18. To
construct pYL126, we inserted an 899-bp
rhlI-containing BamHI-HindIII
fragment from pRhlI-2 into BamHI-HindIII-digested pUCP18.
Biofilm experiments.
Biofilms were grown in flow chambers as described elsewhere
(
8). The biofilm medium was 1% tryptic soy broth. The flow cells
were inoculated with 10
7 cells in 500 µl of 1% tryptic
soy broth. These cells were from an overnight culture. The flow
was initiated at a rate of 0.17 ml per min after 1 h at room
temperature. Where indicated SYTO 62 (Molecular Probes, Eugene,
Oreg.) was used to stain biofilms.
Most images of biofilms were obtained by using a Radiance 2100 scanning confocal laser microscope (SCLM) system (Bio-Rad, Hercules, Calif.) with a Nikon Eclipse E600 microscope. For GFP the excitation and the emission wavelengths were 488 and 515 nm (±15 nm), respectively. For red fluorescent protein (RFP), excitation was at 543 nm and the emission wavelength was collected at 590 ± 35 nm. The excitation wavelength for SYTO 62 was 637 nm, and emission over 660 nm (far-red fluorescence) was collected with a 660LP filter. The image acquisition software was LaserSharp 2000 (Bio-Rad). Images were analyzed with Volocity software (Improvision, Lexington, Mass.). All SCLM biofilm experiments were repeated a minimum of five times. The patterns shown were observed consistently. For confirmation of SCLM results on rhlA-gfp induction in biofilms, we employed a multiphoton laser microscope system (University of Iowa Carver College of Medicine Central Microscopy Core).
Experiments with nonbiofilm planktonic cultures.
Cultures of each strain were grown in tryptic soy broth. Growth measurements and fluorescence are the averages of triplicate experiments. Fluorescence was measured with a Tecan microtiter plate fluorometer. The excitation wavelength was 435 nm, and the emission wavelength was 535 nm. The relative fluorescent units represent the fluorescence values corrected for background (PAO1 without gfp).

RESULTS
Expression of rhlA-gfp in planktonic cultures.
To avoid issues related to plasmid copy number and stability
in biofilms, we used strains with an
rhlA-gfp reporter inserted
as a single copy in the
attB site on the chromosome (see Materials
and Methods). As a first step in the analysis, we followed expression
of
gfp in planktonic cultures and we compared the expression
patterns to the patterns of
rhlAB operon expression known from
previous studies (
22,
25,
29). As expected,
rhlA-gfp was not
expressed in early and mid-logarithmic phase in the parent strain
P. aeruginosa YL101. Fluorescence began to rise during the transition
between logarithmic and stationary phase and continued to increase
in stationary phase. The addition of C4-HSL did not advance
the onset of
gfp expression (Fig.
1A). These results are consistent
with previous reports that the
rhlAB operon is not expressed
until late in growth and that the expression pattern is not
influenced by addition of C4-HSL to
P. aeruginosa PAO1 (
22,
25,
39). Also consistent with previous reports, expression of
the
rhlA-gfp fusion was dependent on C4-HSL. To show this dependence,
we examined
gfp expression in an
rhlI mutant strain that is
incapable of producing C4-HSL,
P. aeruginosa YL100 (Fig.
1B).
This strain showed little or no fluorescence in the absence
of added C4-HSL, and it showed the typical pattern of fluorescence
when C4-HSL was added to the culture medium or when the
rhlI mutation was complemented with a plasmid-borne
rhlI (either
under control of its own promoter or under
tac promoter control).
For reasons that are unclear, when the
rhlI mutant was supplied
with C4-HSL or an
rhlI gene, fluorescence was about twice that
of the parent strain (Fig.
1).
Timing of rhlA-gfp expression in a developing biofilm.
We followed biofilm development in flow chambers. In a first
experiment we used
P. aeruginosa YL101, the PAO1 derivative
with an
rhlA-gfp fusion inserted in the chromosomal
attB site.
The cells used to inoculate the flow chamber were fluorescent,
but after 1 to 2 days cell fluorescence was lost (Fig.
2). Over
the first 48 h, microcolonies formed but fluorescence of cells
in the microcolonies remained low. After an additional 24 h
we observed larger microcolonies that were 20 to 40 µm
in height. These microcolonies showed elevated fluorescence
(Fig.
2,
3 days). After 24 to 48 h of further growth we observed
biofilms with typical mushroom-like structures. The stalk regions
of these structures were brightly fluorescent, but the caps
showed only low levels of GFP fluorescence (Fig.
2).
Expression but not timing of rhlA-gfp in biofilms depends on C4-HSL.
As is true of planktonic cultures (Fig.
1), biofilms of
P. aeruginosa YL100, the
rhlI mutant containing an
rhlA-gfp chromosomal fusion,
did not express GFP unless C4-HSL was added to the biofilm growth
medium or a functional
rhlI was introduced on a plasmid (data
not shown). Expression of GFP in strain YL100 with pYL125 (containing
rhlI controlled by its own promoter) appeared similar to expression
of GFP in the
rhlI wild-type strain YL101, except that in mushrooms
GFP was not only expressed in the stalk region but it was also
expressed in cells around the periphery of the caps (Fig.
3D and J).
The timing of GFP expression was similar to that in
the
rhlI wild type. There was little fluorescence until microcolonies
of at least 20 µm in thickness had developed (data not
shown). When we added C4-HSL (at concentrations of 10 or 20
µM) to the medium flowing over a developing
P. aeruginosa YL100 biofilm or when we grew biofilms of YL100 with a plasmid-borne
rhlI (pYL126) under constitutive
tac promoter control, the timing
and location of GFP expression were identical to the timing
and location of GFP expression with this strain containing the
rhlI expression plasmid pYL125 (Fig.
3). We conclude that C4-HSL
is required for
rhlA expression in biofilms and that the delay
in the onset of
rhlA expression is not due to C4-HSL limitation.
Furthermore, biofilms of cells that overexpress
rhlI show some
GFP expression in the periphery of the caps in addition to fluorescence
in the stalks (Fig.
3). This suggests that the lack of GFP fluorescence
in the mushroom caps of the
rhlI wild-type strain YL101 is not
simply an artifact of the SCLM detection. There are many possible
explanations as to why GFP is not expressed in the interior
of the mushroom caps. As examples, perhaps cells within the
caps are not metabolically active or perhaps there are unknown
regulatory features.
Spatial control of rhlA transcription in biofilms.
The experiments shown in Fig. 2 and 3 suggest that rhlA-gfp is preferentially expressed in the nontwitching stalks of mushroom-like structures. However, the images might represent an SCLM artifact resulting from incomplete penetration of light through the thick biofilm. To address this concern we performed three separate experiments. First, we examined the fluorescence of biofilms when we used a P. aeruginosa strain carrying an arabinose promoter-controlled gfp (YL120). Second, we counterstained the biofilm with SYTO 62, which will cause all cells to fluoresce. Third, we followed fluorescence in a P. aeruginosa YL100 derivative carrying a plasmid-borne constitutive rfp gene in the presence of C4-HSL. When we added L-arabinose to the medium, the arabinose promoter-controlled gfp was expressed throughout 3-day-old biofilms regardless of microcolony thickness (Fig. 4, 3 days), and GFP expression was more uniform in 5-day mushroom structures (Fig. 4A) than it was in 5-day mushroom structures of rhlA-gfp strains. The fluorescence was not entirely uniform, and pockets near the tops of the caps appeared relatively dim. This might represent an artifact resulting from limited penetration of light through the biofilm to the tops of the caps. Nevertheless, the images were quite distinct from images with rhlA promoter-controlled gfp (Fig. 2A and 3D, E, and F). Red fluorescence from the constitutive rfp was evident in both stalks and caps (Fig. 3I), as was red fluorescence when biofilms were counterstained with SYTO 62 (Fig. 3G and H and 4B). All of these control experiments were consistent with the conclusion that transcription from the rhlAB promoter occurs in the stalks prior to cap formation and that transcription from the rhlAB promoter is relatively low in the cells that form the cap.
In a further effort to validate our conclusion that
rhlA-gfp is expressed preferentially in the stalks compared to
araC-P
bad-
gfp,
we made additional measurements and we used a different imaging
technology that reduces light-quenching artifacts. With images
from SCLM we measured fluorescence intensity at different depths
in biofilms of
P. aeruginosa with either the
rhlA-gfp or the
P
bad-
gfp control reporter (Fig.
5A). With the control there
was a steady drop in fluorescence as the distance from the surface
increased, but compared to the
rhlA-gfp-containing strain the
fluorescence was more uniform throughout the biofilm. With the
rhlA-gfp reporter the fluorescence decreased markedly as the
biofilm reached a height of between 20 and 50 µm. One
advantage that the newer imaging technology, multiphoton laser
microscopy, has over SCLM is that fluorescence quenching is
at a minimum. Thus, we used multiphoton laser microscopy to
examine biofilms of
P. aeruginosa carrying either
rhlA-gfp or
arabad-
gfp (Fig.
5B and C, respectively). As expected, the green
fluorescence in the
rhlA-gfp strain was restricted to the stalk
area of mushroom-like structures, whereas the P
bad-
gfp biofilm
fluorescence was more uniform. In fact, the lack of fluorescence
in the caps of the strain carrying the
rhlA-gfp reporter was
even more obvious with multiphoton microscopy than it was with
SCLM, while fluorescence in biofilms of the strain carrying
the
araC-P
bad-
gfp fusion reporter was more uniform (compare
Fig.
4A and
5C). We assume that this is because there is less
noise with multiphoton technology. These experiments are consistent
with the conclusion that
rhlA-gfp is expressed primarily in
stalks of mushroom-like structures.
A previous report showed that biofilms of rhamnolipid synthesis
mutants were abnormal, with a relatively flat architecture that
did not have mushroom-like structures (
7). An obvious hypothesis
based on this finding and our findings is that rhamnolipid synthesis
is required to allow migration of a motile subpopulation up
the stalk to form caps. However, our investigators previously
reported that an
rhlI mutant produced structured biofilms in
comparison to a
lasI mutant (
8). Because we have used different
conditions than those used previously, because the imaging technology
has improved, and because we now understand more about the subtleties
of biofilm development, we have examined biofilms of an
rhlI mutant containing a constitutively expressed stable
gfp (Fig.
6). The biofilms we observed were not flat like the biofilms
of rhamnolipid synthesis mutants described previously, nor did
they appear similar to the wild-type strain. Rather, there were
structures that had a pillar-like appearance. We believe these
might represent uncapped stalks.

DISCUSSION
Previous investigations have established rhamnolipids as a key
factor in defining
P. aeruginosa biofilm structure (
7). We also
know that in planktonic cells genes for rhamnolipid synthesis
are quorum sensing controlled. Thus, we were interested to begin
to learn about when and where in
P. aeruginosa biofilms rhamnolipid
gene expression might occur. In planktonic cultures, the rhamnolipid
synthesis operon
rhlAB is controlled primarily by C4-HSL through
its interaction with RhlR (
23,
29). Moreover, there is additional
poorly understood transcriptional control that manifests itself
in a delay in
rhlAB expression until late logarithmic-early
stationary phase, at least in complex media, regardless of C4-HSL
concentration (
29,
31).
By using RhlAB+ strains with an rhlA-gfp fusion inserted at a neutral site in the chromosome, we were able to follow transcription from an rhlA promoter during P. aeruginosa biofilm development. A first point is that, as expected, rhlA-gfp transcription appeared to be dependent upon C4-HSL. Second, as is the case with cells in planktonic cultures, transcription from the rhlAB promoter was delayed during early biofilm development regardless of C4-HSL availability (Fig. 2). The biofilm flow chambers were inoculated with fluorescent cells, but fluorescence of attached cells was lost within hours and cell fluorescence remained relatively low until microcolonies with a thickness of 20 µm or greater had developed. When we added 3OC12-HSL in addition to C4-HSL in experiments with P. aeruginosa YL100, the pattern of rhlA-gfp expression appeared similar to the pattern we observed with C4-HSL alone (data not shown). The rhlAB promoter region is complex, and planktonic cells show RpoN-dependent rhlAB expression (13, 29). We found that GFP fluorescence in biofilms of an rpoN mutant containing the rhlA-gfp chromosomal fusion was indistinguishable from that in the wild type (data not shown). Thus, we conclude that the delay in rhlA-gfp expression of biofilm cells and its restriction to stalks are not related to rpoN expression, at least in the P. aeruginosa strains used in our studies.
Our images indicate that rhlA expression begins in microcolonies, and GFP fluorescence can be observed not only in microcolonies but also in the stalks of mushroom-like structures as the biofilm continues to grow. However, the fluorescence seems to be restricted to the stalk, and there is very little fluorescence in the mushroom caps even when C4-HSL is added to the medium flowing over the biofilms (Fig. 2 and 3). Because we used a stable GFP, we do not have information on whether transcription from the rhlA promoter was transient, perhaps restricted to a stage of development prior to cap formation, or whether it persisted in the stalks even after cap formation had commenced. We chose to use a stable GFP because we believed this type of reporter, which gives a history of gene expression, would best reflect where rhamnolipids might exist in the biofilm.
We were quite concerned that images showing GFP fluorescence almost exclusively in the stalk region (Fig. 2 and 3) might result from SCLM artifacts, and we performed a number of control experiments to address this issue. These included controls with gfp transcribed from a promoter other than the rhlA promoter, counterstaining with a red fluorescent bacterial cell stain (Fig. 3 and 4), and fluorescence measurements and acquisition of images with a multiphoton laser microscope system (Fig. 5). All of our experiments led to the view that rhlA is expressed primarily in the stalk region of mushroom-like structures. Collectively, our data and other reports are consistent with the following model for the development of mushroom-like structures by P. aeruginosa growing under flow on a glass surface. Cells of P. aeruginosa attach to and move on a surface by means of twitching motility. Often after cell division the two daughter cells stop twitching and begin to form a microcolony (34). We do not know whether the cessation of twitching motility results from a loss of the twitching motility apparatus or whether it might result from cells adhering to each other or the surface in a special manner. The microcolonies develop into stalks that contain bacteria that do not exhibit twitching motility (18). Our current evidence suggests that rhamnolipids may be synthesized specifically in the growing stalks. A subpopulation of cells will migrate up the stalks by twitching motility to form the mushroom cap (18). We suggest that rhamnolipids on the stalk surface function as a surfactant that enables a population moving by twitching motility to migrate on the stalk and form the cap. This might at least in part provide a plausible explanation for why rhamnolipid synthesis mutants form abnormal biofilm structures (7).

ACKNOWLEDGMENTS
We thank Michael Jacobs, Colin Manoil, and Matthew Parsek for
providing
P. aeruginosa strains ahead of publication, and we
thank Pradeep Singh for helpful discussions. We thank Thomas
Moninger and the University of Iowa Central Microscopy Core
for help and support with multiphoton microscopy.
Support was provided by grants from the National Institute of General Medicine (GM59026) and from the W.M. Keck Foundation.

FOOTNOTES
* Corresponding author. Mailing address: 540 EMRB, Roy and Lucille Carver College of Medicine, University of Iowa, Iowa City, IA 52242. Phone: (319) 335-7775. Fax: (319) 335-7949. E-mail:
everett-greenberg{at}uiowa.edu.


REFERENCES
1 - Becher, A., and H. P. Schweizer. 2000. Integration-proficient Pseudomonas aeruginosa vectors for isolation of single-copy chromosomal lacZ and lux gene fusions. BioTechniques 29:948-950.[Medline]
2 - Brint, J. M., and D. E. Ohman. 1995. Synthesis of multiple exoproducts in Pseudomonas aeruginosa is under the control of RhlR-RhlI, another set of regulators in strain PAO1 with homology to the autoinducer-responsive LuxR-LuxI family. J. Bacteriol. 177:7155-7163.[Abstract/Free Full Text]
3 - Burns, J. L., B. W. Ramsey, and A. L. Smith. 1993. Clinical manifestations and treatment of pulmonary infections in cystic fibrosis. Adv. Pediatr. Infect. Dis. 8:53-66.[Medline]
4 - Campbell, R. E., O. Tour, A. E. Palmer, P. A. Steinbach, G. S. Baird, D. A. Zacharias, and R. Y. Tsien. 2002. A monomeric red fluorescent protein. Proc. Natl. Acad. Sci. USA 99:7877-7882.[Abstract/Free Full Text]
5 - Costerton, J. W. 1995. Overview of microbial biofilms. J. Ind. Microbiol. 15:137-140.[CrossRef][Medline]
6 - Costerton, J. W., P. S. Stewart, and E. P. Greenberg. 1999. Bacterial biofilms: a common cause of persistent infections. Science 284:1318-1322.[Abstract/Free Full Text]
7 - Davey, M. E., N. C. Caiazza, and G. A. O'Toole. 2003. Rhamnolipid surfactant production affects biofilm architecture in Pseudomonas aeruginosa PAO1. J. Bacteriol. 185:1027-1036.[Abstract/Free Full Text]
8 - Davies, D. G., M. R. Parsek, J. P. Pearson, B. H. Iglewski, J. W. Costerton, and E. P. Greenberg. 1998. The involvement of cell-to-cell signals in the development of a bacterial biofilm. Science 280:295-298.[Abstract/Free Full Text]
9 - De Kievit, T. R., R. Gillis, S. Marx, C. Brown, and B. H. Iglewski. 2001. Quorum-sensing genes in Pseudomonas aeruginosa biofilms: their role and expression patterns. Appl. Environ. Microbiol. 67:1865-1873.[Abstract/Free Full Text]
10 - De Lorenzo, V., and K. N. Timmis. 1994. Analysis and construction of stable phenotypes in gram-negative bacteria with Tn5- and Tn10-derived minitransposons. Methods Enzymol. 235:386-405.[Medline]
11 - Fuqua, C., and E. P. Greenberg. 2002. Listening in on bacteria: acyl-homoserine lactone signalling. Nat. Rev. Mol. Cell Biol. 3:685-695.[CrossRef][Medline]
12 - Hentzer, M., H. Wu, J. B. Andersen, K. Riedel, T. B. Rasmussen, N. Bagge, N. Kumar, M. A. Schembri, Z. Song, P. Kristoffersen, M. Manefield, J. W. Costerton, S. Molin, L. Eberl, P. Steinberg, S. Kjelleberg, N. Hoiby, and M. Givskov. 2003. Attenuation of Pseudomonas aeruginosa virulence by quorum sensing inhibitors. EMBO J. 22:3803-3815.[CrossRef][Medline]
13 - Heurlier, K., V. Denervaud, G. Pessi, C. Reimmann, and D. Haas. 2003. Negative control of quorum sensing by RpoN (
54) in Pseudomonas aeruginosa PAO1. J. Bacteriol. 185:2227-2235.[Abstract/Free Full Text]
14 - Hoang, T. T., R. R. Karkhoff-Schweizer, A. J. Kutchma, and H. P. Schweizer. 1998. A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants. Gene 212:77-86.[CrossRef][Medline]
15 - Hoang, T. T., A. J. Kutchma, A. Becher, and H. P. Schweizer. 2000. Integration-proficient plasmids for Pseudomonas aeruginosa: site-specific integration and use for engineering of reporter and expression strains. Plasmid 43:59-72.[CrossRef][Medline]
16 - Hoiby, N. 1993. Cystic fibrosis and endobronchial Pseudomonas infection. Curr. Opin. Pediatr. 5:247-254.[Medline]
17 - Holloway, B. W., V. Krishnapillai, and A. F. Morgan. 1979. Chromosomal genetics of Pseudomonas. Microbiol. Rev. 43:73-102.[Free Full Text]
18 - Klausen, M., A. Aaes-Jorgensen, S. Molin, and T. Tolker-Nielsen. 2003. Involvement of bacterial migration in the development of complex multicellular structures in Pseudomonas aeruginosa biofilms. Mol. Microbiol. 50:61-68.[CrossRef][Medline]
19 - Klausen, M., A. Heydorn, P. Ragas, L. Lambertsen, A. Aaes-Jorgensen, S. Molin, and T. Tolker-Nielsen. 2003. Biofilm formation by Pseudomonas aeruginosa wild type, flagella and type IV pili mutants. Mol. Microbiol. 48:1511-1524.[CrossRef][Medline]
20 - Kolter, R., and R. Losick. 1998. One for all and all for one. Science 280:226-227.[Free Full Text]
21 - Latifi, A., M. K. Winson, M. Foglino, B. W. Bycroft, G. S. A. B. Stewart, A. Lazdunski, and P. Williams. 1995. Multiple homologues of LuxR and LuxI control expression of virulence determinants and secondary metabolites through quorum sensing in Pseudomonas aeruginosa PAO1. Mol. Microbiol. 17:333-343.[CrossRef][Medline]
22 - Medina, G., K. Juarez, and G. Soberon-Chavez. 2003. The Pseudomonas aeruginosa rhlAB operon is not expressed during the logarithmic phase of growth even in the presence of its activator RhlR and the autoinducer N-butyryl-homoserine lactone. J. Bacteriol. 185:377-380.[Abstract/Free Full Text]
23 - Medina, G., K. Juarez, B. Valderrama, and G. Soberon-Chavez. 2003. Mechanism of Pseudomonas aeruginosa RhlR transcriptional regulation of the rhlAB promoter. J. Bacteriol. 185:5976-5983.[Abstract/Free Full Text]
24 - Miller, W. G., J. H. Leveau, and S. E. Lindow. 2000. Improved gfp and inaZ broad-host-range promoter-probe vectors. Mol. Plant Microbe Interact. 13:1243-1250.[Medline]
25 - Ochsner, U. A., and J. Reiser. 1995. Autoinducer-mediated regulation of rhamnolipid biosurfactant synthesis in Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. USA 92:6424-6428.[Abstract/Free Full Text]
26 - Parsek, M. R., D. L. Val, B. L. Hanzelka, J. E. Cronan, Jr., and E. P. Greenberg. 1999. Acyl homoserine-lactone quorum-sensing signal generation. Proc. Natl. Acad. Sci. USA 96:4360-4365.[Abstract/Free Full Text]
27 - Pearson, J. P., K. M. Gray, L. Passador, K. D. Tucker, A. Eberhard, B. H. Iglewski, and E. P. Greenberg. 1994. Structure of the autoinducer required for expression of Pseudomonas aeruginosa virulence genes. Proc. Natl. Acad. Sci. USA 91:197-201.[Abstract/Free Full Text]
28 - Pearson, J. P., L. Passador, B. H. Iglewski, and E. P. Greenberg. 1995. A second N-acylhomoserine lactone signal produced by Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. USA 92:1490-1494.[Abstract/Free Full Text]
29 - Pearson, J. P., E. C. Pesci, and B. H. Iglewski. 1997. Roles of Pseudomonas aeruginosa las and rhl quorum-sensing systems in control of elastase and rhamnolipid biosynthesis genes. J. Bacteriol. 179:5756-5767.[Abstract/Free Full Text]
30 - Pesci, E. C., J. P. Pearson, P. C. Seed, and B. H. Iglewski. 1997. Regulation of las and rhl quorum sensing in Pseudomonas aeruginosa. J. Bacteriol. 179:3127-3132.[Abstract/Free Full Text]
31 - Schuster, M., C. P. Lostroh, T. Ogi, and E. P. Greenberg. 2003. Identification, timing, and signal specificity of Pseudomonas aeruginosa quorum-controlled genes: a transcriptome analysis. J. Bacteriol. 185:2066-2079.[Abstract/Free Full Text]
32 - Schweizer, H. P. 1991. Escherichia-Pseudomonas shuttle vectors derived from pUC18/19. Gene 97:109-121.[CrossRef][Medline]
33 - Sharma, S., P. Sachdeva, and J. S. Virdi. 2003. Emerging water-borne pathogens. Appl. Microbiol. Biotechnol. 61:424-428.[Medline]
34 - Singh, P. K., M. R. Parsek, E. P. Greenberg, and M. J. Welsh. 2002. A component of innate immunity prevents bacterial biofilm development. Nature 417:552-555.[CrossRef][Medline]
35 - Smith, R. S., and B. H. Iglewski. 2003. Pseudomonas aeruginosa quorum-sensing systems and virulence. Curr. Opin. Microbiol. 6:56-60.[CrossRef][Medline]
36 - Wagner, V. E., D. Bushnell, L. Passador, A. I. Brooks, and B. H. Iglewski. 2003. Microarray analysis of Pseudomonas aeruginosa quorum-sensing regulons: effects of growth phase and environment. J. Bacteriol. 185:2080-2095.[Abstract/Free Full Text]
37 - Whitehead, N. A., A. M. Barnard, H. Slater, N. J. Simpson, and G. P. Salmond. 2001. Quorum-sensing in gram-negative bacteria. FEMS Microbiol. Rev. 25:365-404.[CrossRef][Medline]
38 - Whiteley, M., and E. P. Greenberg. 2001. Promoter specificity elements in Pseudomonas aeruginosa quorum-sensing-controlled genes. J. Bacteriol. 183:5529-5534.[Abstract/Free Full Text]
39 - Whiteley, M., K. M. Lee, and E. P. Greenberg. 1999. Identification of genes controlled by quorum sensing in Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. USA 96:13904-13909.[Abstract/Free Full Text]
40 - Winson, M. K., M. Camara, A. Latifi, M. Foglino, S. R. Chhabra, M. Daykin, M. Bally, V. Chapon, G. P. Salmond, B. W. Bycroft, A. Lazdunski, G. S. Stewart, and P. Williams. 1995. Multiple N-acyl-L-homoserine lactone signal molecules regulate production of virulence determinants and secondary metabolites in Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. USA 92:9427-9431.[Abstract/Free Full Text]
41 - Woodcock, D. M., P. J. Crowther, J. Doherty, S. Jefferson, E. DeCruz, M. Noyer-Weidner, S. S. Smith, M. Z. Michael, and M. W. Graham. 1989. Quantitative evaluation of Escherichia coli host strains for tolerance to cytosine methylation in plasmid and phage recombinants. Nucleic Acids Res. 17:3469-3478.[Abstract/Free Full Text]
42 - Yanisch-Perron, V., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequence of the M13mp18 and pUC19 vectors. Gene 33:103-119.[CrossRef][Medline]
Journal of Bacteriology, January 2005, p. 37-44, Vol. 187, No. 1
0021-9193/05/$08.00+0 doi:10.1128/JB.187.1.37-44.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
This article has been cited by other articles:
-
Yeung, A. T. Y., Torfs, E. C. W., Jamshidi, F., Bains, M., Wiegand, I., Hancock, R. E. W., Overhage, J.
(2009). Swarming of Pseudomonas aeruginosa Is Controlled by a Broad Spectrum of Transcriptional Regulators, Including MetR. J. Bacteriol.
191: 5592-5602
[Abstract]
[Full Text]
-
Karatan, E., Watnick, P.
(2009). Signals, Regulatory Networks, and Materials That Build and Break Bacterial Biofilms. Microbiol. Mol. Biol. Rev.
73: 310-347
[Abstract]
[Full Text]
-
Skindersoe, M. E., Alhede, M., Phipps, R., Yang, L., Jensen, P. O., Rasmussen, T. B., Bjarnsholt, T., Tolker-Nielsen, T., Hoiby, N., Givskov, M.
(2008). Effects of Antibiotics on Quorum Sensing in Pseudomonas aeruginosa. Antimicrob. Agents Chemother.
52: 3648-3663
[Abstract]
[Full Text]
-
Moreau-Marquis, S., Bomberger, J. M., Anderson, G. G., Swiatecka-Urban, A., Ye, S., O'Toole, G. A., Stanton, B. A.
(2008). The {Delta}F508-CFTR mutation results in increased biofilm formation by Pseudomonas aeruginosa by increasing iron availability. Am. J. Physiol. Lung Cell. Mol. Physiol.
295: L25-L37
[Abstract]
[Full Text]
-
Panmanee, W., Gomez, F., Witte, D., Pancholi, V., Britigan, B. E., Hassett, D. J.
(2008). The Peptidoglycan-Associated Lipoprotein OprL Helps Protect a Pseudomonas aeruginosa Mutant Devoid of the Transactivator OxyR from Hydrogen Peroxide-Mediated Killing during Planktonic and Biofilm Culture. J. Bacteriol.
190: 3658-3669
[Abstract]
[Full Text]
-
Zhu, K., Rock, C. O.
(2008). RhlA Converts {beta}-Hydroxyacyl-Acyl Carrier Protein Intermediates in Fatty Acid Synthesis to the {beta}-Hydroxydecanoyl-{beta}-Hydroxydecanoate Component of Rhamnolipids in Pseudomonas aeruginosa. J. Bacteriol.
190: 3147-3154
[Abstract]
[Full Text]
-
Meers, P., Neville, M., Malinin, V., Scotto, A. W., Sardaryan, G., Kurumunda, R., Mackinson, C., James, G., Fisher, S., Perkins, W. R.
(2008). Biofilm penetration, triggered release and in vivo activity of inhaled liposomal amikacin in chronic Pseudomonas aeruginosa lung infections. J Antimicrob Chemother
61: 859-868
[Abstract]
[Full Text]
-
Morici, L. A., Carterson, A. J., Wagner, V. E., Frisk, A., Schurr, J. R., zu Bentrup, K. H., Hassett, D. J., Iglewski, B. H., Sauer, K., Schurr, M. J.
(2007). Pseudomonas aeruginosa AlgR Represses the Rhl Quorum-Sensing System in a Biofilm-Specific Manner. J. Bacteriol.
189: 7752-7764
[Abstract]
[Full Text]
-
Lequette, Y., Rollet, E., Delangle, A., Greenberg, E. P., Bohin, J.-P.
(2007). Linear osmoregulated periplasmic glucans are encoded by the opgGH locus of Pseudomonas aeruginosa. Microbiology
153: 3255-3263
[Abstract]
[Full Text]
-
Pamp, S. J., Tolker-Nielsen, T.
(2007). Multiple Roles of Biosurfactants in Structural Biofilm Development by Pseudomonas aeruginosa. J. Bacteriol.
189: 2531-2539
[Abstract]
[Full Text]
-
Haagensen, J. A. J., Klausen, M., Ernst, R. K., Miller, S. I., Folkesson, A., Tolker-Nielsen, T., Molin, S.
(2007). Differentiation and Distribution of Colistin- and Sodium Dodecyl Sulfate-Tolerant Cells in Pseudomonas aeruginosa Biofilms. J. Bacteriol.
189: 28-37
[Abstract]
[Full Text]
-
Teal, T. K., Lies, D. P., Wold, B. J., Newman, D. K.
(2006). Spatiometabolic Stratification of Shewanella oneidensis Biofilms. Appl. Environ. Microbiol.
72: 7324-7330
[Abstract]
[Full Text]
-
Hsueh, Y.-H., Somers, E. B., Lereclus, D., Wong, A. C. L.
(2006). Biofilm Formation by Bacillus cereus Is Influenced by PlcR, a Pleiotropic Regulator.. Appl. Environ. Microbiol.
72: 5089-5092
[Abstract]
[Full Text]
-
Miller, D. J., Zhang, Y.-M., Rock, C. O., White, S. W.
(2006). Structure of RhlG, an Essential beta-Ketoacyl Reductase in the Rhamnolipid Biosynthetic Pathway of Pseudomonas aeruginosa. J. Biol. Chem.
281: 18025-18032
[Abstract]
[Full Text]
-
Hogan, D. A.
(2006). Talking to themselves: autoregulation and quorum sensing in fungi.. Eukaryot Cell
5: 613-619
[Full Text]
-
Caiazza, N. C., Shanks, R. M. Q., O'Toole, G. A.
(2005). Rhamnolipids Modulate Swarming Motility Patterns of Pseudomonas aeruginosa. J. Bacteriol.
187: 7351-7361
[Abstract]
[Full Text]