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Journal of Bacteriology, May 2005, p. 3407-3414, Vol. 187, No. 10
0021-9193/05/$08.00+0 doi:10.1128/JB.187.10.3407-3414.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Department of Clinical Laboratory Sciences and Medical Biotechnology, National Taiwan University College of Medicine, Taipei, Taiwan, Republic of China,1 Department of Laboratory Medicine, National Taiwan University Hospital and National Taiwan University College of Medicine, Taipei, Taiwan, Republic of China,2 Center for Optoelectronic Biomedicine, National Taiwan University College of Medicine, Taipei, Taiwan, Republic of China,3 Division of Molecular Medicine, Faculty of Medical and Health Sciences, University of Auckland, Auckland, New Zealand,4 Institute of Infection, Immunity and Inflammation, Centre for Biomolecular Sciences, University of Nottingham, Nottingham, NG7 2RD United Kingdom5
Received 30 November 2004/ Accepted 8 February 2005
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Swarming is the result of the regulated expression of gene networks required to initiate the complex processes underlying the required morphological and physiological changes (10, 11, 15, 16). Development of a Serratia surface swarming colony requires the processing and integration of multiple environmental, cell-to-cell, and intracellular signals involving surface contact and local high bacterial population densities (2). The flagellar master operon (flhDC) and an N-acylhomoserine lactone (AHL)-dependent quorum-sensing system are global regulators of flagellar motility and cell population density, respectively (12, 18, 25, 26). Cellular differentiation is only one part of this process, which requires a lag period prior to the commencement of swarming migration, during which cellular proliferation occurs up to the required population density and a large amount of biosurfactant is produced (1, 18, 25). An additional layer of regulation of surface migration may also be exerted through the posttranscriptional regulator RsmA (4). When overexpressed, rsmA inhibits the formation of a spreading colony in S. marcescens (4), and this effect may be mediated via repression of AHL-dependent quorum sensing, since overexpression of rsmA in Pseudomonas aeruginosa has been reported to negatively regulate AHL synthase expression (27).
Many regulatory pathways involved in control of swarming remain to be characterized at the molecular level. For example, exposure of cells to a surface with a specific viscosity is likely to require recognition by an unknown sensor. Furthermore, the physiological signals that provide essential stimuli for the initiation of swarming and the underlying signal transduction pathways have also not been characterized yet. S. marcescens swarming is known to be a temperature-dependent behavior which occurs at 30°C but not at 37°C. Bacteria inoculated onto identical plates and incubated at 37°C do not initiate swarming even after 48 h of culture and form only small defined colonies. This may be a consequence of reduced flagellar motility (26) and/or a reduction in biosurfactant production following the temperature upshift. To begin unraveling the underlying regulatory mechanism(s), we utilized mini-Tn5 mutagenesis to screen a group of S. marcescens mutants that demonstrated swarming proficiency at 37°C. In the process of characterizing one of these mutants, we identified a bacterial two-component signal transduction system (17) which we termed RssA-RssB. Here we present evidence showing that swarming of S. marcescens is inhibited by the presence of saturated fatty acids (SFAs) and that this effect is mediated via the RssA-RssB two-component system. The cellular fatty acid composition, hemolysin production, and cell surface topography were also shown to be regulated by RssA-RssB.
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A and CH-1
B are rssA and rssB knockout mutants, respectively, that were constructed via insertion of an
cassette (Smr) from pHP45
(28) and subsequent homologous recombination. Escherichia coli strains JM109, CC118
pir, S17-1
pir, Top10 F', and XL-1 Blue were cultured at 37°C and S. marcescens was cultured at 30°C in L broth (Difco) (29) unless indicated otherwise. M9 salt solution (29) was used to make minimal growth medium (MGM), into which 0.8% Eiken agar (Eiken, Japan) was incorporated to make MGM plates. In the case of mixed cultures (e.g., conjugations), incubation was at 30°C. The pUT::mini-Tn5-Km1 construct (9) was used in the transposon mutagenesis assays for screening precocious-swarming mutants. pZErO2.1 (Kmr), pCR2.1 (Apr Kmr) (Invitrogen), pBCSK(+) (Cmr), and pBluescript SKII(+) (Stratagene) constructs were used as DNA fragment cloning vectors. pSA400(PshlBA::luxCDABE), used as the bioreporter for monitoring the promoter activity of PshlBA, was generated by insertion of a PCR-amplified shlBA promoter region upstream of luxCDABE, derived from pSB1075 (32), into the pACYC184 (Tcr Cmr) vector (8). pWC200 (Tcr Cmr) was constructed by PCR cloning a 1,766-bp DNA fragment containing full-length rssA into a pACYC184 vector, the expression of which was driven by its native promoter. pWC201 (Cmr) was constructed by cloning a 1,014-bp DNA fragment containing the complete rssB structural gene into pBCSK (Stratagene), which was also expressed via its native promoter. pWC202 contained the complete PCR-amplified 2.5-kb rssB-rssA genes. Swarming motility of S. marcescens was examined on swarming agar plates (LB solidified with 0.8% Eiken agar) by inoculating 5 µl of an overnight broth culture onto the center of each agar plate. Cellular elongation and polyploidy were examined microscopically as described previously (22, 26). To determine bacterial growth rates, hourly increases in the optical densities at 600 nm of broth cultures were determined.
Enzymes and chemicals. DNA restriction and modification enzymes were purchased from Roche (Germany). Taq polymerase and PCR-related products were obtained from either Perkin Elmer (United States) or Takara Biomedicals (Japan). Other laboratory grade chemicals were purchased from Sigma (United States), Merck (Germany), or BDH (United Kingdom).
Recombinant DNA techniques. Unless indicated otherwise, standard protocols were used for DNA-DNA hybridization, plasmid and chromosomal DNA preparation, transformation, electroporation, PCR, restriction digestion, agarose gel electrophoresis, DNA recovery from agarose gels, DNA ligation (29), and conjugation (9). Southern blotting of chromosomal DNA was performed using nylon membranes (HybondN+; Amersham) and a DIG High Prime labeling kit according to the recommendations of the manufacturer (Roche). PCR DNA amplicons were cloned by using pCRII and a TA cloning kit (Invitrogen). The sequences of the primers used in this study are available from us. DNA sequencing and analysis were performed using a Perkin-Elmer model 377 Autosequencer with a Taq DyeDeoxy terminator cycle sequencing kit (Applied Biosystems). The DNA sequences of PCR products were confirmed by sequencing both strands from two or three independent reactions.
Analysis of DNA and protein sequences. Deduced DNA and protein sequences were compared with GenBank DNA and nonredundant protein sequence databases, respectively, using blastn or blastx via the National Center for Biotechnology Information internet homepage (http://www.ncbi.nlm.nih.gov/).
Screening of precocious-swarming mutants by mini-Tn5 mutagenesis. For effective transfer of the pUT-mini-Tn5-Km1 recombinant plasmid from E. coli to S. marcescens CH-1 by conjugation, the protocols of de Lorenzo and Timmis (9) were used. After conjugation, bacteria were suspended in 5 ml MgSO4 broth and spread onto modified LB agar plates (0.04% NaCl, 2% glycerol, 0.5% yeast extract, 1% Bacto Tryptone [Difco], 0.8% Eiken agar, 50 µg ml1 kanamycin, and 13 µg ml1 tetracycline), which was followed by incubation at 37°C. Transconjugants that exhibited swarming migration at 37°C were then selected. A total of 6,000 colonies were screened, from which 17 colonies were finally selected. Southern blot hybridization using a labeled kanamycin gene as a probe was performed to confirm insertion of only one transposon copy in the mutants.
Construction of S. marcescens CH-1
A and CH-1
B insertion-deletion mutants.
A PCR protocol (18) was designed to introduce specific HindIII sites into rssA and rssB genes for subsequent insertion of a HindIII-digested
(Smr) gene cassette (28). For gene inactivation mutagenesis by homologous recombination, the respective plasmid constructs were transferred from the permissive host strain E. coli S17- 49
pir to S. marcescens CH-1 by conjugation, and the transconjugants were spread on LB plates with streptomycin (100 µg/ml) and tetracycline (13 µg/ml). Mutants with double-crossover events were selected by colony PCR screening. Southern hybridization using PCR-amplified rssA or rssB genes as probes was performed to confirm the mutant genotypes (data not shown). The data confirmed that a double-crossover event had occurred, and the new strains were designated CH-1
A and CH-1
B, respectively.
Complementation of precocious-swarming mutants.
Transfer of pWC200, pWC201, pWC202, and a control plasmid into S. marcescens CH-1
A or CH-1
B via electroporation was used to test the effect of overexpressing rssA, rssB, or rssB-rssA in the mutant backgrounds for complementation assays. Transformants that were Cmr were selected for further characterization of swarming and cell differentiation behavior.
Detection of luciferase activity. An Autolumat LB 953 luminometer (EG&G, Germany) with the "replicates" program was used for bioluminescence measurement. For all procedures we followed the protocols supplied by the manufacturer.
Measurement of hemolysin activity. Cell-associated hemolysin (ShlA) activity was assayed as described previously (20) and was expressed in arbitrary hemolytic units (1 U caused the release of 50 mg hemoglobin/h in the standard assay).
AFM. Bacteria were cultured overnight in LB, diluted 1:100 in fresh LB, and incubated at 37°C with vigorous shaking (225 rpm) for 2 h. Prior to imaging, bacteria were gently washed with distilled water, and final concentrations of 104 to 105 cells/ml were used for atomic force microscopy (AFM) experiments. AFM experiments were performed using SOLVER BIO atomic force microscopy (NT-MDT, Moscow, Russia). The procedures for AFM imaging have been described by Hansma et al. (14). Silicon nitrite tips were used, with a force constant of 5.5 N/m. Imaging was carried out with dry samples. AFM images were generated at line frequencies between 1 and 3 Hz, with 256 lines per image. Images were obtained using semicontact (tapping) mode AFM. The data were analyzed with the SMENA software (Advanced Technologies Center, Russia) (standard error of the mean, <5%).
Analysis of cellular fatty acids by the gas chromatography-fatty acid methyl ester method. Both swarming and nonswarming bacteria were seeded onto plates under different growth conditions. Extraction of cellular fatty acids was performed by standard procedures (MIDI, United States). Samples were prepared for analysis by the MIDI gas chromatography-fatty acid methyl ester analysis system (Microbe Inotech Laboratories, United States). Three independent experiments were performed, and the results obtained were expressed averages of three experiments (standard error of the mean, <10%).
Nucleotide sequence accession number. The 3,009-bp nucleotide sequence containing rssA and rssB has been deposited in the DDBJ/EMBL/GenBank databases under accession no. AF465237.
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Analysis of the locus which the transposon interrupted. Conventional digestion, cloning, and sequencing of a 3,009-bp DNA fragment flanking the mini-Tn5 insertion site in the S. marcescens WC100 genome were performed. The mini-Tn5 insertion in WC100 was revealed to be within a 1,407-bp open reading frame, designated orf1, encoding a putative 469-amino-acid (52.8-kDa) polypeptide with a calculated isoelectric point of 5.45. Upstream of orf1 we identified an additional open reading frame, orf2, encoding a putative 219-amino-acid (24.7-kDa) polypeptide in the same direction.
Computer-assisted homology searches using BLASTP (3) of protein sequences stored in the DDBJ/EMBL/GenBank databanks indicated that Orf1 is highly homologous to members of the two-component sensor kinase family of proteins, including E. coli EvgS (22% identity, 41% similarity) (10). Orf2 exhibits homology with two-component response-regulator elements, including 39% identity and 57% homology throughout the alignment to the two-component response regulator PmrA of Pectobacterium carotovorum subsp. carotovorum (19). We designated orf1 rssA (regulation of Serratia swarming A), and orf2 was designated rssB.
Construction of rssA and rssB insertion-deletion mutants and characterization of swarming-related phenotypes.
Mutations were separately introduced into rssA and rssB in CH-1 cells by insertion-deletion via homologous recombination to form the CH-1
A and CH-1
B mutants, respectively. The phenotypes of the WC100, CH-1
A, and CH-1
B mutants were characterized by their growth dynamics, cell elongation patterns, cell densities, and temperature-regulated swarming behaviors. No differences were observed between WC100 and S. marcescens CH-1
A in any of these analyses. While swarming of CH-1 was inhibited at 37°C on LB swarming plates, CH-1
A and CH-1
B swarming was normal (Fig. 1A).
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FIG. 1. Swarming assays with S. marcescens CH-1, CH-1 A, and CH-1 B cells. (A) Assays carried out at both 30°C and 37°C on 0.8% agar LB swarming plates. (B) Comparison of swarming velocities (13). Cells were grown overnight in LB and washed once in 1x phosphate-buffered saline, and 5 µl of inoculum was added to the center of each plate. The plates were then incubated for 12 h, during which the extent of swarming migration was assessed. Symbols: , CH-1, 30°C; , CH-1, 37°C; , CH-1 A, 30°C; , CH-1 A, 37°C; , CH-1 B, 30°C; , CH-1 B, 37°C. The error bars indicate the standard errors of the means (<5%; n = 4). (C) Swarming results for the three S. marcescens strains after 10 h of incubation on LB plates containing 1.2% agar at 30°C.
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A, CH-1
B, and CH-1 at 30°C were monitored by using the method of Gygi et al. (13). Depending on the moisture contents of the plates, CH-1 cells typically spent 4 to 5 h in the initial lag phase, which was approximately 1 h longer than the CH-1
A and CH-1
B mutants spent. Following initiation of swarming, CH-1
A cells migrated at an increasingly higher velocity than CH-1 cells (Fig. 1B). The average velocity for S. marcescens CH-1 swarming increased from 1 mm/h (between 5 and 6 h) to 3.3 mm/h (between 7 and 8 h), whereas the average velocity for S. marcescens CH-1
A swarming increased from 2 mm/h to 5 mm/h during the same period (Fig. 1B). Due to a shorter lag phase and the higher migration velocity, CH-1
A mutant cells therefore translocated a greater distance in the same period than the CH-1 parental cells. Swarming of CH-1
A mutants was essentially the same at 37°C as at 30°C (Fig. 1A and B).
CH-1
B exhibited a slower swarming phenotype than CH-1
A at both temperatures (Fig. 1A and B). Both CH-1
A and CH-1
B cells swarmed at agar concentrations of up to 1% (wt/vol) at 30°C (Fig. 1C), and on an average they looked shorter than CH-1 cells following growth on LB containing 0.8% (wt/vol) agar, as determined by light microscopy at a magnification of x1,000.
Transformation of plasmid pWC200 (pACYC184::rssA) expressing the rssA gene restored CH-1
A to the nonswaming phenotype characteristic of parent strain CH-1 incubated at 37°C (data not shown), confirming that rssA was the gene responsible for the precocious-swarming phenotype of CH-1
A. This observation also suggested that RssA may function as a negative regulator of swarming at 37°C. On the other hand, rssB-rssA (pWC202, pACYC184::rssB-rssA) in trans, but not rssB (pWC201, pACYC184::rssB) alone, inhibited CH-1
B swarming at 37°C (data not shown), suggesting that rssB-rssA may form an operon and both genes are involved in swarming regulation.
RssAB negatively regulates hemolysin production in S. marcescens.
The cell-surface-associated hemolysin ShlA has been identified as a major virulence factor in S. marcescens (21). To determine whether RssAB regulated hemolysin production, we assayed both hemolytic activity (Fig. 2A) and shlA expression (Fig. 2B). Figure 2A shows that the hemolytic activity in CH-1
A and CH-1
B cells was higher than that in CH-1 cells at both 30°C (1.7-fold and 1.4-fold increases for CH-1
A and CH-1
B, respectively) and 37°C (1.6-fold and 1.4-fold increases for CH-1
A and CH-1
B, respectively) after 5 h of growth to the late log phase. Further experiments using a plasmid-borne shlBA::luxCDABE fusion (pSA400) as a reporter for hemolysin gene (shlA) activity revealed four- to eightfold and three- to fourfold increases in shlBA promoter activity in CH-1
A and CH-1
AB, respectively, compared with the parent strain (Fig. 2B). These data indicate that RssA-RssB is a negative regulator of shlBA promoter activity.
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FIG. 2. S. marcescens CH-1 A and CH-1 B cells show increased hemolysin activity at 30°C and 37°C. The specific hemolysin activity (20) (A) and the transcriptional activity of the hemolysin gene shlA expressed as the specific bioluminescence activity (B) of CH-1(pSA400), CH-1 A(pSA400), and CH-1 B(pSA400) were monitored at 30°C and 37°C. (A) Symbols: , CH-1, 30°C; , CH-1, 37°C; , CH-1 A, 30°C; , CH-1 A, 37°C; , CH-1 B, 30°C; , CH-1 B, 37°C. (B) Symbols: , CH-1(pSA400), 30°C; , CH-1(pSA400), 37°C; , CH-1 A(pSA400), 30°C; , CH-1 A(pSA400), 37°C; , CH-1 B(pSA400), 30°C; , CH-1 B(pSA400), 37°C. RLU, relative light units; OD, optical density.
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A, and CH-1
B cells was studied using AFM. A clear trend emerged, which showed that, on average, the calculated surface texture parameter root mean square values for the length and width of CH-1, CH-1
A, and CH-1
B cells were 1,981 by 734 nm, 1,518 by 555 nm, and 1,644 by 680 nm, respectively (standard error of the mean, <5%). This was consistent with our previous observation that the average cell dimensions of both the CH-1
A and CH-1
B mutants were less than those of CH-1 cells as determined by light microscopy at a magnification of x1,000.
The cell surface topography of both CH-1
A and CH-1
B mutants changed when they were cultured in LB at 37°C (Fig. 3A), and the changes are shown in Fig. 3B. CH-1 showed a mean valley-to-peak distance of 11.900 nm, with a maximal value of 25.900 nm, and a surface roughness of 2.652 nm. CH-1
A and CH-1
B, however, showed mean valley-to-peak distances of 9.075 and 7.775 nm, respectively, with maximal values of 17.700 and 14.675 nm, respectively, and surface roughness values of 1.999 and 1.545 nm, respectively. These data suggest that RssA and RssB are either directly or indirectly involved in determination of S. marcescens cell surface topology.
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FIG. 3. Cellular surface topology changes in S. marcescens CH-1 A and CH-1 B cells. S. marcescens CH-1, CH-1 A, and CH-1 B cells were subjected to surface structure characterization by AFM. Cells were cultured overnight in LB, followed by 1:100 dilution in fresh LB for further culturing at 37°C for 2 h. Cells were harvested and treated to enable AFM observation (14). (A) Cell surface images. (B) Characterization of at least 20 cells of each strain.
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A swarmed at both temperatures, CH-1 swarming was completely inhibited at 37°C (Fig. 4A). These observations suggested that a higher environmental temperature per se is not inhibitory for CH-1 swarming, and some components (or their metabolic derivatives) of yeast extract inhibited parental CH-1 cell swarming at 37°C. Subsequent assays showed that apart from certain fatty acids, none of the other medium components tested, such as amino acids, sugars, or iron compounds, inhibited CH-1 swarming (Fig. 4A and data not shown). Whereas unsaturated fatty acids (UFAs) exerted no significant swarming inhibition effects on CH-1, swarming was completely inhibited by the addition of lauric or myristic acid and was slightly inhibited by palmitic or stearic acid at a final concentration of 0.01% (wt/vol) (Fig. 4A). The fatty acids tested did not have significant inhibitory effects on CH-1
A and CH-1
B swarming (Fig. 4A and data not shown). The myristic acid-dependent phenomenon was further observed to be dose dependent at 37°C. The swarming lag times of CH-1 cells were delayed with increasing myristic acid concentrations from 0.00125% to 0.01% (wt/vol) (Fig. 4B). A similar myristic acid inhibitory effect was also observed at 30°C on both LB swarming plates and MGM-Casamino Acid plates, and lauric acid exhibited similar inhibitory effects (Fig. 4A). Taken together, these data indicate that in addition to a temperature shift, initiation of swarming is regulated by the availability of SFAs in a concentration-dependent manner and that this effect is likely to be mediated via RssA and RssB.
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FIG. 4. Effects of fatty acids on the swarming of S. marcescens CH-1 and CH-1 A and the swarming phenotype are closely related to the cellular fatty acid profile. (A) Swarming assays with CH-1 and CH-1 A cells performed on MGM-0.8% agar plates either with or without additives at both 30°C and 37°C. Cas a.a., Casamino Acids. (B) Swarming of CH-1, but not swarming of CH-1 A, is inhibited by myristic acid in a dose-dependent manner at 37°C after 12 h of incubation. (C) Average percentages of cellular fatty acids for swarming cells (open bars) and nonswarming cells (solid bars). The cellular fatty acid profiles of S. marcescens cells grown under different growth conditions leading to either swarming or nonswarming phenotypes were analyzed by gas chromatography. The data are the means for three independent experiments (standard errors of the means, <10%).
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TABLE 1. Percentages of cellular fatty acids in both swarming and nonswarming S. marcescens cellsa
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A and CH-1
B swarming cells, which showed swarming fatty acid profiles at this temperature (Table 1). For these mutants, the ratios of saturated to nonsaturated fatty acids were 1.8 and 2.6, respectively, whereas the ratio was 5.6 for the parent strain (Table 1). Furthermore, although CH-1, CH-1
A, and CH-1
B all showed swarming fatty acid profiles at 30°C, their overall fatty acid compositions differed (Table 1). Analysis of the fatty acid profiles of the three strains also revealed differences between the strains when they were cultured on MGM media at 37°C (Table 1). Taken together, the data showed that the S. marcescens CH-1 cellular fatty acid profile is affected by both temperature and the medium fatty acid content and that the profile is closely related to the swarming phenotype, with swarming cells containing relatively more UFAs and branched-chain fatty acids and nonswarming cells containing more SFAs. The data also suggested that consistent with swarming regulation, cellular fatty acid profiles are regulated via RssA-RssB.
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Currently, it is not clear whether RssA senses SFAs per se or the change in membrane lipid composition in response to addition of fatty acids. It is conceivable that RssA-RssB is involved in a regulatory loop in which either SFAs or temperature upshifts influence swarming behavior through changing the cellular fatty acid profile and altering the ratio of SFAs to UFAs. This may be sensed by RssA and RssB, which also regulate cellular fatty acid composition. For example, in LB at 30°C, CH-1 has a "swarming" fatty acid profile (i.e., a ratio of saturated- to nonsaturated fatty acids of 2.0), whereas at 37°C it fails to swarm and has a fatty acid ratio of 5.6 (Table 1). On a minimal medium (MGM plus Casamino Acids), CH-1 swarms at both temperatures, but swarming can be inhibited by exogenous provision of lauric acid or myristic acid. These acids change the fatty acid ratio from 2.5 (i.e., a swarming profile) to 7.2 and 5.1 (i.e., nonswarming profiles) respectively. However, myristic acid was unable to inhibit swarming by the rssA mutant at 37°C, which retained a swarming fatty acid profile with a ratio of 3.1. Thus, as a putative sensor kinase, RssA is likely to sense changes either in membrane fluidity or in the ratio of saturated to unsaturated fatty acids or even variations in the levels of specific fatty acids either exogenously or within the cell envelope. To further clarify SFA function, an S. marcescens mutant defective in fatty acid transport would have to be constructed and the effect of SFAs on its swarming would have to be characterized.
An important question that remains is the identity of the molecular mechanism underlying swarming regulation by RssA-RssB. In P. mirabilis, an acidic capsular polysaccharide (Cmf-CPS) is proposed to enhance growth medium surface fluidity by extracting water from the agar, thus reducing friction and aiding swarming migration (13). In E. coli K-12, capsule synthesis and swarming have been reported to be regulated by a yojN-rcsB-rcsC signal transduction system (30). The rsbA-rscB-rscC (7) locus has been found to be responsible for swarming regulation in P. mirabilis, in which RsbA is a homologue of YojN. These findings suggest that P. mirabilis and E. coli may use a common signal transduction pathway to regulate capsule synthesis and swarming. Given that the average cell lengths of the CH-1
A and CH-1
B mutants are about 10% less than that of parental strain CH-1, this suggests that cell length determination, which is known to be regulated by FlhDCSm, is also regulated by RssA-RssB. Thus, it is speculated that in both swarming mutants the flagellar motility may be affected. Furthermore, the cell surface topography of rssA and rssB mutants is markedly different from that of CH-1, as revealed by AFM, suggesting that RssA and RssB are involved in homeostasis maintenance of the cellular surface structures and function. Further experiments to measure some physiological parameters involved in swarming regulation in S. marcescens are being performed. These parameters include the flhDCSm flagellar motility and amounts of biosurfactant and extracellular polysaccharides synthesized. These experiments should help us understand the regulatory mechanism for swarming in S. marcescens.
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YojN
RcsB signalling pathway implicated in capsular synthesis and swarming behaviour. Mol. Microbiol. 40:440-450.[CrossRef][Medline]
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