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Journal of Bacteriology, June 2005, p. 3878-3883, Vol. 187, No. 11
0021-9193/05/$08.00+0 doi:10.1128/JB.187.11.3878-3883.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Department of Medicine, Veterans Affairs Medical Center, and the University of California, San Francisco, California
Received 7 December 2004/ Accepted 16 February 2005
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In recent studies, it has been shown that the two SRRs undergo glycosylation by at least four proteins (Gly, Nss, GtfA, and GtfB) that are encoded in a 13.6-kb region downstream of the 9.2-kb gspB structural gene (the secY2A2 locus) (Fig. 1). GtfA and GtfB are essential for GspB glycosylation both in S. gordonii and in a heterologous host (Escherichia coli). Glycosylation mediated by GtfA and GtfB is important for the solubility of GspB (12). Although the precise functions of Gly and Nss have not been determined, these proteins affect the composition of the GspB-linked carbohydrate (11, 12).
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FIG. 1. Genetic map of the gspB-secY2A2 locus in M99 and in the derived mutants. The nucleotide sequence between orf6 and orf7 is also shown. The dotted arrows above the sequence represent an inverted repeat. The bold sequences represent stop codons for orf6 and orf7. Striped arrows, spectinomycin resistance gene (spc); gray arrows, gspB; black arrows, target genes for gene replacement; and open arrows, the other genes in this locus.
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To identify additional proteins that might be involved in GspB production or export, we analyzed the chromosomal region immediately downstream of the gtfB gene. M99 chromosomal DNA was digested with XbaI, treated with T4 DNA ligase under dilute conditions, and then used as a template for inverse PCR. A 3-kb product was obtained by amplification of the circularized chromosomal fragments using the 3' gtfA reverse primer 1.8.4 and the 5' gtfB forward primer 1.8.31 (Table 1). The PCR product was cloned into pBluescript SK (Stratagene) and sequenced using the M13-40 forward and reverse universal sequencing primers and by primer walking.
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TABLE 1. Primers used for this study
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Although Orf5 and Orf6 did not show significant primary sequence similarity to any well-characterized proteins when analyzed with the BLASTP program, their sizes and secondary-structure predictions are remarkably similar to those of SecE and SecG of Bacillus subtilis. These proteins consist of 59 and 76 amino acid residues that include one and two transmembrane segments (TMS), respectively (5, 13). Similarly, Orf5 and Orf6 are predicted to have one and two TMS (Fig. 2). In view of these similarities, we then compared the sequences of these proteins in greater detail using the ClustalW program. As shown in Fig. 2A, Orf5 of S. gordonii M99 was 17% identical (52% similar) to SecE of B. subtilis 168 and 13% identical (52% similar) to SecE of S. gordonii Challis. Orf6 of S. gordonii M99 was 15% identical (55% similar) to SecG of B. subtilis 168 and 16% identical (55% similar) to SecG of S. gordonii Challis (Fig. 2B). Moreover, the location of the TMS within the proteins was well conserved between Orf5 and SecE and between Orf6 and SecG (Fig. 2).
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FIG. 2. Alignments of the deduced amino acid sequences of Orf5 and Orf6 of S. gordonii strain M99 with SecE and SecG of other gram-positive species. (A) Alignment of Orf5 with SecE of B. subtilis 168 (accession number, CAB11876) and with SecE of S. gordonii Challis. (B) Alignment of Orf6 with SecG of B. subtilis 168 (CAB15368) and with SecG of S. gordonii Challis. The SecE and SecG sequences of B. subtilis 168 were obtained from GenBank. The SecE and SecG sequences of S. gordonii Challis were retrieved from the genome sequence data for this strain (recently available from TIGR at http://www.tigr.org) by performing a BLAST search with the SecE (AAK76075) and SecG (AAK75095) sequences of S. pneumoniae TIGR4. The sequences were aligned using ClustalW (http://www.ddbj.nig.ac.jp/search/clustalw-e.html). Identities and similarities between proteins were calculated on the basis of the alignments. Dashes indicate gaps in the aligned sequences. Bars and colons between two sequences indicate identical amino acid residues and conservative changes, respectively. Underlined sequences represent TMS predicted by using TMpred (http://www.ch.embnet.org/software/TMPRED_form.html). S.g., S. gordonii; B.s., B. subtilis.
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, linearized with the proper restriction enzymes, and then introduced into S. gordonii strain M99 by natural transformation, as described previously (3). Recombination at the expected site in the S. gordonii chromosome was confirmed by Southern hybridization analysis of DNA isolated from the spectinomycin-resistant transformants. The genetic organizations of the gspB-secY2A2 locus of M99 and of the orf5, orf6, and orf7 mutant strains (PS851, PS842, and PS887, respectively) are shown in Fig. 1. |
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TABLE 2. Bacterial strains and plasmids used in this study
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Immunoblotting of these extracts revealed that the cell wall of the parent strain M99 contained two forms of GspB, both with apparent molecular masses of greater than 250 kDa (Fig. 3A, lane 3). The major protein (mature GspB) migrated well ahead of the minor protein. The minor protein migrated at the same apparent molecular mass as that of the nonexported protoplast form of GspB (pre-GspB) (Fig. 3A, lanes 3 and 4). In view of its higher molecular mass, we also refer to this minor protein in the cell wall as pre-GspB. Neither pre-GspB nor mature GspB was detected in the cell wall or in protoplasts of the gspB mutant PS436 (Fig. 3A, lanes 1 and 2).
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FIG. 3. Effect of orf5, orf6, and orf7 disruption on the export and expression of GspB. (A) GspB expression and export by PS436 (gspB::pM995'Bint), M99, PS851 ( orf5::spc), PS842 ( orf6::spc), and PS887 ( orf7::spc). (B and C) Effect of proteinase K treatment of M99, PS851, and PS842. Bacterial cells suspended in DPBS were incubated for 1 h at 37°C with (+) or without () proteinase K. Cells were recovered by washing, and protoplasts were generated as described in the text. Proteins were separated by electrophoresis through a 3 to 8% polyacrylamide gradient gel and then subjected to Western blot analysis using a polyclonal anti-GspB serum. All proteins shown in this figure migrated above the highest standard (250 kDa). Each lane contains cell wall proteins extracted from bacteria in 75 µl of a broth culture or protoplast proteins extracted from bacteria in 50 µl of a broth culture. CW, cell wall proteins; P, protoplast proteins.
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orf5::spc) (Fig. 3A, lane 5). Mature GspB was also undetectable in the cell wall of PS842 (
orf6::spc) (Fig. 3A, lane 7). Instead, these mutants contained increased amounts of pre-GspB in the protoplasts (Fig. 3A, lanes 6 and 8). In addition, pre-GspB was more evident in the cell walls of the mutant strains (Fig. 3A, lanes 5 and 7). In contrast to PS851 and PS842, strain PS887 (
orf7::spc) had levels of GspB expression and export unaltered from those of strain M99 (Fig. 3A, lanes 9 and 10). To confirm that pre-GspB detected in the protoplasts was localized intracellularly, strains M99, PS851, and PS842 were incubated at 37°C for 1 h in Dulbecco phosphate-buffered saline (DPBS) containing 1 mg/ml of proteinase K (Sigma) or in DPBS containing protease inhibitors (Complete Mini [Roche] and 2 µg/ml of aprotinin [Sigma]). The cells were then washed three times with DPBS containing the protease inhibitors, and the cell wall and protoplast proteins were extracted and examined by immunoblotting with the anti-GspB serum as described above.
After proteinase K treatment, neither mature GspB nor pre-GspB was detected among the cell wall proteins of M99 (Fig. 3B, lane 2). In PS851 and PS842, proteinase K treatment drastically reduced the amount of pre-GspB detected in the cell wall (Fig. 3B, lanes 4 and 6). In contrast, exposure of M99 and the derivatives to proteinase K did not affect the detection of pre-GspB in the protoplasts (Fig. 3C), indicating that pre-GspB in the protoplasts was retained intracellularly. These data, in conjunction with the marked accumulation of pre-GspB in the protoplasts of PS851 and PS842, suggest that Orf5 and Orf6, but not Orf7, are directly or indirectly involved in the efficient export of GspB.
It is noteworthy that minor amounts of pre-GspB, but not mature GspB, were also present in the cell walls of strains carrying mutations in each of the accessory secretory genes (secY2, asp1, asp2, asp3, and secA2) (references 3 and 11 and our unpublished data). In addition, a similar phenomenon has been observed in the S. gordonii strain Challis, where Hsa (a GspB homologue) is exported more efficiently and has a lower apparent molecular mass when the accessory Sec system is intact (2). Although not explicitly described in our previous reports, the combined findings indicate that the accessory Sec system is required not only for the efficient export but also for the proper processing of GspB and Hsa. Because mature GspB has never been observed in the protoplasts of export-deficient strains (Fig. 3 and data not shown), GspB export and maturation appear to be coupled. However, the precise structural differences between pre-GspB and mature GspB, whether these include differences in glycosylation or in the polypeptide core, have not been defined. Moreover, the components that are directly responsible for the processing of GspB have not been identified.
We performed complementation analyses of the orf5 and orf6 mutants to confirm that the above mutations were not polar. The orf5 and orf6 coding regions were amplified by PCR using the primer pairs Orf5C1/Orf5C2 and Orf6C1/Orf6C2 (Table 1), respectively. The amplified fragments were digested with NcoI and XbaI and cloned into pMSP3545 (Table 2), which placed these genes under the control of a nisin-inducible promoter. PS851 and PS842 were then transformed with pMSP3545 (as a control) or with the resultant recombinant plasmids pORF5C and pORF6C (Table 2). Each mutant carrying pMSP3545 with or without the orf5 or orf6 coding region was grown in THB at 37°C for 16 h and then diluted 10-fold with THB containing 60 µg/ml of erythromycin and 250 ng/ml of nisin (Sigma). After incubation at 37°C for 3 to 4 h, the cell wall proteins of the transformants were extracted and analyzed by Western blotting for GspB. As an internal control for protein content, we also evaluated these preparations for the presence of another cell wall protein (GspA). Western blot analysis with anti-recombinant GspA serum (11) revealed comparable amounts of this protein in these samples, confirming that equivalent amounts of total protein were loaded in the gels (data not shown).
As expected, normal GspB export was not restored by introducing the pMSP3545 vector alone into the mutant strains (Fig. 4, lanes 3 and 7). In contrast, the expression of Orf5 and Orf6 in trans restored the export of mature GspB in the orf5 and orf6 mutant strains, respectively (Fig. 4, lanes 4 and 9). The results confirmed that the mutations in these strains were not polar. Intriguingly, when Orf6 was overexpressed in the orf5 mutant, the export of GspB was partially complemented (Fig. 4, lane 5). Conversely, partial complementation was not readily apparent in PS842 complemented by orf5 (Fig. 4, lane 8). An extremely small amount of mature GspB was seen when this blot was overexposed. These data suggest that Orf5 and Orf6 may have somewhat redundant functions.
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FIG. 4. Complementation analysis of the orf5 and orf6 mutant strains (PS851 and PS842, respectively). Protein expression was induced with nisin, as described in the text. Extracted cell wall proteins were separated by electrophoresis through a 3 to 8% polyacrylamide gradient gel and then subjected to Western blot analysis using the anti-GspB serum. Each lane contains proteins extracted from 200 µl of broth culture.
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We also examined whether overexpression of the canonical SecE and SecG proteins could enhance GspB export by the accessory Sec system in the orf5 and orf6 mutants, respectively. The secE and secG coding regions were amplified from M99 genomic DNA with primer pairs SecEF/SecER and SecGF/SecGR (Table 1), respectively, which were designed using the Challis secE and secG sequences. The amplified fragments were cloned into pMSP3545, and the resultant plasmids, pSecE and pSecG (Table 2), were introduced into PS851 and PS842, respectively. After the induction of SecE and SecG expression with nisin, as described above, the cell wall proteins of the transformants were extracted and analyzed for GspB by Western blotting. The induction of SecE or SecG expression had no effect on GspB export in the orf5 and orf6 mutants, respectively (data not shown). Although we have no direct evidence that SecE and SecG can function when expressed in trans in S. gordonii, it is likely that these genes were expressed. The orf5 and orf6 genes cloned into the same expression vector readily complemented the respective mutations, as described above, demonstrating that similarly sized genes can be expressed from this plasmid. In addition, no frameshift mutation or nonsense mutation was seen in the cloned secE and secG genes by sequencing. Therefore, these findings imply that Orf5 and Orf6 are not interchangeable functional homologues of SecE and SecG.
We then assessed the ability of the orf5 and orf6 mutants to bind human platelets in vitro, as described previously (3). PS851 and PS842 showed significant reductions in levels of binding to platelet monolayers (69.2% ± 16.9% and 69.0% ± 15.3% reduction, respectively; P < 0.0001) compared with that of M99. The reduced levels of platelet binding observed with these mutants were comparable to those seen with strain PS436, in which gspB has been disrupted (61.1% ± 21.3% reduction in platelet binding compared with that of M99) (Fig. 5A).
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FIG. 5. Platelet binding by M99 and the derivative strains. (A) Platelet binding by strains M99, PS851 ( orf5::spc), PS842 ( orf6::spc), and PS436 (gspB::pM995'Bint). Data were collected from two experiments (n = 8) with platelets from two different human donors. For each strain, binding is expressed as a percentage of the binding levels achieved by the parent strain M99 (mean ± standard deviation). Differences in platelet binding were compared by the unpaired t test with the Welch modification. Asterisks indicate values that are significantly different (P < 0.0001) from that for M99. (B) Platelet binding by strains M99 (pMSP3545), PS851 (pMSP3545), PS851 (pORF5C), PS842 (pMSP3545), and PS842 (pORF6C). Data were collected from two experiments (n = 12) with platelets from two different human donors. For each strain, binding is expressed as a percentage of the binding levels achieved by M99 (pMSP3545) (mean ± standard deviation).
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Our findings indicate that Orf5 and Orf6 are components of the accessory Sec system that contribute to the selective export of GspB. In contrast, Orf7 appears to have no function in GspB expression or translocation. The presence of the inverted repeat sequence between orf6 and orf7, which may serve as a rho-independent terminator, suggests that orf6 is the 3'-end gene of the secY2A2 operon. In view of their role in export, Orf5 and Orf6 have been renamed Asp4 and Asp5 (for accessory secretory protein). As described in previous studies, several other strains of gram-positive bacteria, including S. gordonii strain Challis, S. pneumoniae strain TIGR4, Streptococcus agalactiae strains NEM316 and 2603V/R, Staphylococcus aureus strains COL, NCTC8325, N315, Mu50, and MW2, and Staphylococcus epidermidis strain ATCC 12228, possess homologues of the gspB-secY2A2 locus. The homologous loci encode a GspB-like protein and proteins predicted to be involved in export and glycosylation (3, 10, 11). Inspection of genome sequence data deposited in GenBank, or available from The Institute for Genomic Research (TIGR) or the University of Oklahoma (http://www.genome.ou.edu), revealed that S. gordonii Challis and S. pneumoniae TIGR4 have asp4 and asp5 homologues but that S. agalactiae strains have homologues of asp4, but not asp5, in the loci. No asp4 or asp5 homologues are apparent downstream of the gtfB homologues in S. aureus and S. epidermidis strains. These observations indicate that the requirement of Asp4 and Asp5 for the export of GspB homologues may be different among gram-positive organisms. We are currently pursuing experiments to elucidate more precisely the role of Asp4 and Asp5 in the accessory Sec system.
Nucleotide sequence accession number. The nucleotide sequence determined in this study has been deposited in the DDBJ, EMBL, and GenBank databases under accession number AY028381.
The pMSP3545 shuttle vector was a gift from Gary M. Dunny. We thank Ian Siboo and Julie Higashi for their helpful scientific and editorial suggestions.
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. Infect. Immun. 72:6528-6537.
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