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Journal of Bacteriology, July 2005, p. 4451-4456, Vol. 187, No. 13
0021-9193/05/$08.00+0 doi:10.1128/JB.187.13.4451-4456.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Dental Research Institute, University of Toronto, Toronto, Ontario, Canada M5G 1G6
Received 14 September 2004/ Accepted 22 March 2005
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Citric acid is ubiquitous in nature; for example, fruit juices contain between 5 and 8% citric acid, and teeth are composed of 0.3% citric acid by weight (3, 16). Citric acid is also a cause of tooth enamel erosion (3). Citrate is widely used as a food preservative and also has bactericidal activity against coagulase-negative Staphylococcus and Staphylococcus aureus (11).
Many bacteria have transport systems that allow the uptake of citrate. In the genera Lactococcus and Leuconostoc citrate transport is mediated by homologous citrate/lactate antiporters designated CitP (5, 6). This transport leads to the generation of a proton motive force and to increased cell survival in acidic conditions (5, 6). In these bacteria cometabolism of citrate with glucose results in heterofermentation and the production of the end products CO2, diacetyl, acetoin, and butanediol. Some bacteria, including Klebsiella pneumoniae, are even able to grow in an anaerobic environment utilizing citrate as the sole carbon source (reviewed in reference 4). K. pneumoniae possesses two distinct citrate transporters; under aerobic conditions a proton-dependent CitH citrate tranporter is expressed, whereas under anaerobic conditions a sodium ion-dependent CitS is expressed (12).
Unlike K. pneumoniae, S. mutans is unable to survive when citrate is the sole source of carbon, as determined by negative growth on Simmons citrate agar. When citrate is available, S. mutans also does not produce CO2 gas, which is a common by-product of citrate metabolism in many other lactic acid bacteria. Despite these observations the relationship between S. mutans and citrate has been largely unstudied. Interestingly, the S. mutans genome contains orthologs of many citrate metabolic genes that are present in bacterial species known to utilize citrate (3). These genes encode the subunits of citrate lyase (citCDEFGX) and oxaloacetate decarboxylase [bbc (
), oadB (ß), and pycB (
)] (2). The S. mutans genome also harbors a putative Mg2+-dependent citrate transporter which we designated citM. This citrate metabolism locus is illustrated in Fig. 1, and the possible metabolic outcomes for citrate are shown in Fig. 2. In this study, the first of its kind with S. mutans, we focused on the mechanisms of citrate uptake and metabolism by S. mutans and the effect of citrate on cell survival at low pH.
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FIG. 1. Graphic representation of the putative citrate metabolism locus in S. mutans. Genes encoding the putative citrate transporter, citrate lyase subunits, and oxaloacetate decarboxylase subunits are shown.
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FIG. 2. Putative citrate utilization pathway of S. mutans. CoA, coenzyme A.
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TABLE 1. Bacterial strains used in this study
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TABLE 2. Oligonucleotides used in this study
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Citrate killing curves. Single colonies of a strain were inoculated into THYE and incubated overnight at 37°C in a 5% CO2 atmosphere. Overnight cultures were subsequently inoculated 1:100 into anaerobic medium MM4 at pH 7 with the COHN atmosphere. Two aliquots of the overnight subcultures were then centrifuged at 4,000 x g for 10 min. The pellets were then suspended in 10 times the original volume of medium MM4 at pH 5 containing either no citrate or 8 mM citrate and incubated at 37°C in the COHN atmosphere. An aliquot of each culture was removed and serially diluted in 10 mM potassium phosphate buffer, pH 7.2. Twenty microliters of each dilution was spotted in triplicate onto THYE-1% agar plates that were incubated at 37°C in the COHN atmosphere for 2 days. The first plate was considered time zero. Subsequent aliquots were removed at 5 h, 1 day, 2 days, and 3 days, serially diluted, and plated.
Citrate adaptation. Single colonies of a strain were inoculated into THYE and incubated overnight at 37°C in a 5% CO2 atmosphere. Overnight cultures were subsequently inoculated 1:10 into anaerobic medium MM4 at pH 7 and incubated overnight at 37°C under the COHN atmosphere. Two aliquots of the overnight subcultures were then centrifuged at 4,000 x g for 10 min. The pellets were then suspended in 10 times the original volume of medium MM4 at pH 7 containing either no citrate or 8 mM citrate and incubated at 37°C in the COHN atmosphere for 18 h. Following incubation, two aliquots from each subculture were centrifuged at 16,000 x g for 5 min. The pellets were then suspended in 10 times the original volume of medium MM4 at pH 5 containing either no citrate or 8 mM citrate and incubated at 37°C in the COHN atmosphere. An aliquot was removed and serially diluted in 10 mM potassium phosphate buffer, pH 7.2. Twenty microliters of each dilution was spotted in triplicate onto THYE-1% agar plates that were incubated at 37°C in the COHN atmosphere for 2 days. The first plate was considered time zero. Subsequent aliquots were removed, serially diluted, and plated at 24 h and 48 h.
Citrate transport assay.
Citrate transport assays were performed as described by Krom et al. (9), with minor modifications. Single colonies of S. mutans UA159 were inoculated into 10 ml of modified Berman's broth at pH 6.5 supplemented with 0.1% raffinose and 10 mM citrate and incubated overnight at 37°C in a 5% CO2 atmosphere. Overnight cultures were subsequently diluted fivefold in fresh Berman's broth at pH 6.5 supplemented with 0.35% raffinose and 10 mM citrate and incubated at 37°C until the cells reached the mid-logarithmic phase (optical density at 600 nm,
0.4 to 0.6). The cells were then harvested by centrifugation and washed twice with cold 50 mM PIPES [piperazine-N,N'-bis(2-ethanesulfonic acid)], pH 6.5. The PIPES buffer had previously been treated with15 g/liter Chelex 100 (Sigma Chemicals) for 18 h to remove residual metal ions. Cells were then resuspended in 10 ml of the same buffer supplemented with the appropriate amount of metal ions. Aliquots (100 µl) were incubated at 37°C and allowed to equilibrate for 15 min. At time zero [1,5-14C]citrate (final concentration, 4.5 µM; 112 mCi/mmol) was added. Uptake was stopped by addition of 2 ml of ice-cold 0.1 M LiCl, and cells were immediately filtered through a 0.2-µm-pore-size nitrocellulose filter. The filters were washed once with 2 ml of ice-cold 0.1 M LiCl and submerged in scintillation fluid, and the internalized radioactivity was counted with a liquid scintillation counter. To obtain dry weights for standardization, quadruplicate 1-ml aliquots of resuspended cells were filtered through dried preweighed filters, dried for 24 h, and reweighed.
Quantitative real-time PCR analysis of citM expression. To determine the effects of the presence of citrate or pH on S. mutans citM transcription levels, quantitative real-time PCR was performed. S. mutans UA159 cells were grown in Berman's broth (pH 5.0, pH 6.0, and pH 7.0) to the mid-log phase. Total RNA was harvested as described by Hanna et al. (8). A First Strand cDNA synthesis kit (MBI Fermentas) was used according to the manufacturer's specifications to generate cDNA from 1 µg of DNase-treated RNA. The resulting single-stranded cDNA was diluted to a concentration of 50 ng/µl for real-time PCR analysis. To ensure that there was no contaminating DNA, two negative control reaction mixtures were set up, one without template RNA and the other lacking reverse transcriptase.
For amplification and detection of real-time PCR products, we used a Quantitect SYBR Green PCR kit (QIAGEN). The real-time PCR mixtures contained 100 ng of template DNA, 250 nM of each primer, and 2x SYBR Green mixture (which contained SYBR Green, deoxynucleoside triphosphates, MgCl2, and Hotstar Taq polymerase). Real-time PCR was carried out with a Cepheid Smart cycler (Cepheid, Sunnyvale, CA) using citM-specific primers (Table 2). For each reaction the cycle threshold (Ct) value was determined; this value reflected the starting amount of cDNA in each sample. The initial DNA concentrations were determined by comparing experimental Ct values to a standard curve for citM which was generated by plotting these Ct values against the absorbance of serially diluted known quantities of amplicons. The data were normalized using gyrA expression results, which did not vary for the conditions examined (data not shown).
Citrate metabolism assay.
S. mutans cells were grown in Berman's broth containing 10 mM citrate to the mid-log phase (optical density at 600 nm,
0.4). Cells were subsequently washed and resuspended in potassium phosphate, 10 mM MgCl2 buffer at the appropriate pH. The mixture was then incubated at 37°C for 10 min to allow equilibration, after which 2.5 mM [1,5-14C]citrate (1 Ci mol1) was added. The cells were allowed to metabolize the citrate for 1 h, and this was followed by centrifugation to separate the cells from the extracellular metabolites. Cells were then lysed using glass beads and a Fast Prep machine to release the intracellular metabolic end products. The intracellular extract was treated with trichloroacetic acid to precipitate proteins and nucleic acids, and this was followed by an EDTA treatment to chelate metal ions. The extract was then neutralized with potassium hydroxide (KOH). The extracellular metabolites were also treated in the same fashion as the intracellular extract, with additions of trichloroacetic acid, EDTA, and KOH. Both extracts were spotted onto 60-Å silica gel thin-layer chromatography (TLC) plates. Radiolabeled citrate, aspartate, glutamate, lysine, and histidine standards (Amersham Biosciences) were also spotted onto the TLC plates. The plates were then placed into a developing chamber that had previously been charged with an n-butanol-acetic acid-water (4:1:1) eluent and allowed to resolve. Following migration for 4 to 6 h, the plates were air dried, and the spots were visualized by autoradiography. This procedure was repeated for the SMCitM, SMCLY, SMOAD, and SMASPB strains. Nonradiolabeled citrate, oxaloacetate, and aspartate standards were also spotted onto the TLC plates, and after resolution the standards were detected colorimetrically using a 10% solution of bromocresol green in ethanol.
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TABLE 3. Growth rates of citrate metabolic mutant strains
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FIG. 3. Relative survival of S. mutans at pH 5 in medium MM4 with 8 mM citrate (solid symbols) and without citrate (open symbols). Samples were serially diluted and plated on THYE agar plates. The level of survival of each strain compared to the survival during growth without citrate was determined by dividing the number of colonies present at each time by the number of colonies present at time zero without citrate. Symbols: and , UA159; and , SMCitM.
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FIG. 4. Effect of incubating S. mutans UA159 cells in the presence of citrate prior to exposure to pH 5 with and without citrate. Cells were grown in medium MM4 at pH 7 in the absence or presence of 8 mM citrate and subsequently exposed to medium MM4 at pH 5 with 8 mM citrate. After this the cells were serially diluted and plated on THYE agar plates. The level of survival for each strain was determined by dividing the number of colonies present at each time by the number of colonies present at time zero. Symbols: , cells grown at pH 7 without citrate and then incubated at pH 5 without citrate; , cells grown at pH 7 without citrate and then incubated at pH 5 with 8 mM citrate; , cells grown at pH 7 with 8 mM citrate and then incubated at pH 5 without citrate; , cells grown at pH 7 with 8 mM citrate and then incubated at pH 5 with 8 mM citrate.
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FIG. 5. Uptake of [1,5-14C]citrate by S. mutans in the presence of different metal cations. The uptake of [14C]citrate was measured in 50 mM PIPES, pH 6.5, in the presence of 1 µM Fe3+ ( ) or 5 mM Mn2+ ( ) or without added metal ions (). The uptake of [1,5-14C]citrate by SMCitM was measured in the presence of 1 µM Fe3+ ( ). [1,5-14C]citrate uptake was not detected with 5 mM Mg2+, Ni2+, or Ca2+ as a cofactor (data not shown).
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FIG. 6. Expression of citM in response to pH and citrate. The data indicate the increased expression compared to the expression at pH 7 without citrate, normalized to gyrA expression levels. The values are means of five replicates.
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FIG. 7. Autoradiograph of intracellular metabolites separated by TLC from S. mutans strains. The cells were resuspended in 50 mM PIPES, pH 6.5, and allowed to take up 2.5 mM [1,5-14C]citrate for 1 h. Radiolabeled [1,5-14C]citrate and [14C]aspartate standards were also spotted on the plate. The strains examined were S. mutans UA159 (Wild type), SMCitM, SMCLY, SMOAD, and SMASPB.
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Ferric citrate transport has been well documented in gram-negative bacteria. We believe that this is the first known report of a gram-positive citrate transporter that preferentially utilizes ferric ions as a cofactor. Citrate chelates ferric ions and readily precipitates them out of solution; therefore, transport analyses were performed using 1 µM FeCl3 instead of the 5 mM used for other metal ions. S. mutans is known to have a nutritional requirement for trace metals, including magnesium, manganese, and iron (3). S. mutans requires iron at a concentration of 3.6 µM for optimal growth (3), and this concentration is far greater that the concentration present in human saliva (0.01 to 1.0 µM) (18). An S. mutans ABC transporter, encoded by the sloABCR operon, has previously been identified as an Fe2+ transporter (17). Experiments have shown that iron increases the dental plaque pH in vivo; however, the mechanisms are not known (13, 15). Iron has an important role in the cariogenesis of S. mutans, and CitM may play a part in iron acquisition.
This study is also the first study to describe citrate metabolism by S. mutans. This metabolism results in the conversion of citrate into aspartate. Aspartate production in the SMOAD mutant can be explained since the Oad enzyme is not part of the citrate-to-aspartate pathway. The precise metabolic end product of SMASPB was not determined; however, it can be inferred that AspB is involved in citrate metabolism as an AspB mutant was more sensitive to growth in the presence of citrate than the parent strain. Citrate lyase is responsible for the conversion of citrate to oxaloacetate as citrate was seen to accumulate in the SMCLY strain. Citrate does appear to enter central metabolism and does not seem to provide any growth or survival benefit under acidic conditions. Interestingly, however, the presence of citrate during growth at neutral pH affords S. mutans enhanced acid tolerance, as well as tolerance to citrate at low pH. S. mutans may, in fact, exploit citrate's ability to chelate essential ferric iron to transport it into the cell.
This work was supported by operating grant MT-15431 from the Canadian Institute for Health Research. D.G.C. is the recipient of a Canada Research Chair. B.K. is a CIHR strategic training fellow in Cell Signaling in Mucosal Inflammation & Pain (STP-53877).
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