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Journal of Bacteriology, August 2005, p. 5236-5241, Vol. 187, No. 15
0021-9193/05/$08.00+0 doi:10.1128/JB.187.15.5236-5241.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
The Faculty of Pharmaceutical Sciences, Kobe-Gakuin University, Nishi-ku, Kobe 651-2180, Japan,1 Department of Biochemistry, Robert Wood Johnson Medical School, 675 Hoes Lane, Piscataway, New Jersey 08854,2 Chukyo Women's University, Obu, Aichi 474-0011, Japan3
Received 29 November 2004/ Accepted 26 April 2005
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-crystallin domain, typically conserved in small heat shock proteins, was found in Mx Hsp16.6. Mx Hsp16.6 was not detected during normal vegetative growth but was immediately induced after heat shock. Expression of the hsp16.6 gene was not induced by other stresses, such as starvation, oxidation, and high osmolarity. Mx Hsp16.6 was mostly localized in particles formed after heat shock and precipitated by low-speed centrifugation. Furthermore, Mx Hsp16.6 was detected in highly electron-dense particles in heat-shocked cells by immunoelectron microscopy, suggesting that it forms large complexes with heat-denatured proteins. An insertion mutation in the hsp16.6 gene resulted in lower viability during heat shock and lower acquired thermotolerance. Therefore, it is likely that Mx Hsp16.6 plays critical roles in the heat shock response in M. xanthus. |
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-crystallin proteins of the vertebrate eye lens in their C-terminal 90 amino acids. The
-crystallin domain of sHSPs is preceded by an N-terminal region that varies in size and sequence. sHSPs are known to form multimers consisting of 9 to >30 monomers and to function as ATP-independent chaperones by interacting with heat-denatured proteins to prevent irreversible protein denaturation (13). The proteins interacting with the sHSPs are subsequently facilitated to be restored from inactive proteins to functional proteins in cooperation with ATP-dependent chaperones, such as DnaK and GroEL/GroES. Furthermore, an sHSP from Synechocystis sp. was found not only to have protein-protective activity but also to stabilize lipid membranes (22). Myxococcus xanthus is a gram-negative soil bacterium that is capable of differentiation into heat-resistant spores under starvation conditions. This differentiation is coordinated by exchange of intercellular signals involving the formation of multicellular fruiting bodies within which the spores are formed. Therefore, M. xanthus has been studied as a simple model system for cellular differentiation.
We previously investigated the heat shock response of M. xanthus by two-dimensional (2D) gel electrophoresis, and 18 HSPs, including DnaK, GroEL1, GroEL2 and GroES, were identified (19). One of these HSPs, a protein with a molecular mass of 16.6 kDa that was not detected under normal growth conditions, was highly induced by heat shock. This protein was designated Mx Hsp16.6. In this study, we isolated the gene encoding Mx Hsp16.6 in order to examine the function of Mx Hsp16.6 in the heat shock response. Analysis of hsp16.6 mRNA expression showed that the hsp16.6 gene was specifically induced by heat shock but not by other stresses, such as starvation, oxidation, and high osmolality. Western blot analysis revealed that Mx Hsp16.6 was produced immediately after heat shock and was localized predominantly in aggregates that were precipitated by low-speed centrifugation. Furthermore, Mx Hsp16.6 was detected in highly electron-dense particles in heat-shocked cells by immunoelectron microscopy. Characterization of an hsp16.6 gene insertion mutant indicated that the hsp16.6 gene was essential for viability in the heat shock response. These results suggest that Mx Hsp16.6 plays a critical role in the heat shock response by forming large complexes with heat-denatured proteins and preventing irreversible aggregation.
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Isolation of the hsp16.6 gene. An 88-bp HindIII-BamHI fragment that was amplified by PCR using oligonucleotides generated from an amino acid sequence determined in a previous study (19) was used as a probe for chromosomal digests in Southern blot analysis to detect the hsp16.6 gene. A 2-kbp PstI fragment that hybridized with the probe was subsequently cloned into pUC19 (pH2P2.0). Analysis of the DNA sequence revealed that the fragment included an open reading frame (ORF) containing the previously determined sequence described above.
Preparation of total RNA. Total RNA was prepared from M. xanthus DZF1 cells at the mid-log and stationary phases in CYE liquid medium, after heat shock at 42°C for 10 min, after oxidative stress due to 10 mM H2O2 treatment for 10 min, after osmotic shock due to 0.3 M NaCl treatment for 10 min, and at 6 h after the initiation of fruiting body development.
Construction of an insertion mutant, hsp16.6::km. A kanamycin resistance gene was cloned at the SmaI site located 175 bp downstream of the translation initiation site in the hsp16.6 gene of pH2P2.0. The resultant plasmid was linearized and electroporated into M. xanthus DZF1. Proper double-crossover recombination at the hsp16.6 gene was confirmed by PCR.
Examination of viability and acquired thermotolerance. Cells grown to the mid-log phase at 30°C in CYE liquid medium were shifted to 40 or 42°C and incubated for 60 min. At 0, 15, 30, and 60 min after the temperature shift, 0.1-ml aliquots of the cultures were harvested and diluted 105-fold with sterile saline buffer. The diluted cultures were spread with soft CYE agar onto CYE plates. After 3 days of incubation at 30°C, the number of colonies was determined.
To examine acquired thermotolerance, cells grown to the mid-log phase at 30°C in CYE liquid medium were shifted to 40°C and incubated for 60 min. Next, the cultures were shifted to 43°C and incubated for 60 min. Finally, the cultures were shifted to 30°C and incubated for 6 h. Cell viability was measured by colony formation as described above.
Preparation of an antibody against Mx Hsp16.6. The coding region of the hsp16.6 gene was amplified by PCR with primers 5'CTCTCATATGCAGACTCGCAATCCGTT3' and 5'CTCTGGATCCTCAGCCCTGGACCTTGACTT3' (NdeI and BamHI sites are underlined). The PCR products were cloned into pET11a. Expression and purification of Mx Hsp16.6 and subsequent preparation of an anti-Mx Hsp16.6 antiserum were performed as described previously for protein W (18). Mx Hsp16.6 immunoglobulin (IgG) was purified from the anti-Mx Hsp16.6 antiserum using an Immunopure protein G column kit (Pierce).
Fractionation of cellular proteins. Cells grown in CYE liquid medium were harvested before and after heat shock at 42°C. The cells were suspended in sonication buffer (20 mM Tris-HCl, pH 7.6, 1 mM EDTA, 1 mM phenylmethylsulfonyl fluoride) and disrupted by sonication. Unbroken cells were removed by centrifugation at 2,000 x g for 20 min at 4°C, and the supernatant was then centrifuged at 12,000 x g for 20 min at 4°C. The precipitate was designated the pellet fraction. The supernatant was then centrifuged at 105,000 x g for 30 min at 4°C. The resulting supernatant and precipitate were designated the cytoplasmic and membrane fractions, respectively. The membrane fraction was washed with sonication buffer once.
Analysis of Western blot hybridization and immunoelectron microscopy. Western blot hybridization and immunoelectron microscopy were carried out as described previously (18).
Nucleotide sequence accession number. The nucleotide sequence data for hsp16.6 have been deposited in the GenBank nucleotide sequence database under accession number AY953291.
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FIG. 1. Alignment of Mx Hsp16.6 (Mx) with the heat shock protein of M. jannaschii (Mj), Synechocystis sp. strain PCC6803 HSP17 (Sy) (11), and S. aurantiaca SP21 (Sa) (8). Amino acids that are identical in more than 75% of the sequences and homologous substitutions are indicated by black and gray backgrounds, respectively. The secondary structures of Mj Hsp16.5 that have been determined are indicated above the sequences. The highly conserved amino acids in -crystallin are indicated below the sequences.
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-crystallin domain (Fig. 1). Therefore, Mx Hsp16.6 belongs to the
-crystallin-type sHSP family. The amino acid sequences of members of the sHSP family do not exhibit high levels of homology, even in their
-crystallin domains, as high as the levels of homology of amino acid sequences of other HSPs, such as DnaK and GroEL. The
-crystallin domain from residues 33 to 105 of Mx Hsp16.6 exhibits 61.1, 51.4, and 34.7% identity to SP21 of Stigmatella aurantiaca, Hsp16.6 from Synechocystis sp. strain PCC6803, and HSP16.5 of Methanococcus jannaschii, respectively. The highly conserved motif AXXXXGXL is well conserved in the C terminus of the
-crystallin domains (Fig. 1). It is interesting that nine residues (TLTLPRREE) downstream of AXXXXGXL are also highly conserved among these proteins. However, the N-terminal region preceding the
-crystallin domain of Mx Hsp16.6 shows little similarity to regions of other sHSPs. It has been demonstrated that HSP16.5 from M. jannaschii forms multimers consisting of 24 monomers and that deletion of 12 residues at the N terminus causes failure of multimer assembly, suggesting that the N-terminal region plays a role in the assembly process (13). Induction of the hsp16.6 gene in various stress conditions and fruiting body development. To examine expression of the hsp16.6 gene in various stress conditions at the transcription level, primer extension analysis was performed. Total RNA was prepared from cells at the mid-log and stationary phases, after heat shock, oxidative stress, and osmotic shock, and during fruiting body development. As shown in Fig. 2A, the hsp16.6 mRNA was detected only in heat-shocked cells and not in other stress conditions. Two 5' ends were identified, and one of these was induced more than the other. From these results, 35 and 10 promoter elements were assigned, as shown in Fig. 2B. One of the hsp16.6 promoter sequences (sequence b), which induced weaker expression than the other sequence (sequence a), exhibited high levels of similarity with the sequences of the lonD promoter and the vegA promoter (Fig. 2B), but no sequence similar to the lonD cis element was present in the hsp16.6 promoter. In addition, the stronger promoter (sequence a) of the hsp16.6 gene exhibited little similarity to other known promoters, including the heat shock promoters in other bacteria.
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FIG. 2. Induction of the hsp16.6 gene under various stress conditions. (A) Identification of the 5' ends of the mRNA by primer extension analysis. Total RNA was extracted from cells at the mid-log phase (lane 1), at the stationary phase (lane 2), after heat shock (lane 3), after oxidative stress (lane 4), after osmotic shock (lane 5), and at 6 h after the initiation of fruiting body development (lane 6). Lanes G, A, T, and C contained sequence ladders. (B) Comparison of the sequences of the hsp16.6 promoter with the sequences of the vegA and lonD promoters of M. xanthus and consensus sequences recognized by E. coli RpoD, RpoH, and RpoE. (C) Induction of Mx Hsp16.6 during heat shock. A total cell extract was prepared from cells before and 5, 10, 15, 30, and 60 min after heat shock. Mx Hsp16.6 was detected by Western blot analysis using an anti-Mx Hsp16.6 IgG.
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Characterization of the hsp16.6::km mutant. Analysis of the M. xanthus genome sequence showed that M. xanthus contains no homologs of Mx Hsp16.6, as is the case for the cyanobacterium Synechocystis sp. strain PCC6803 (11), although some other organisms have several sHSPs (5, 16). To examine the function of Mx Hsp16.6 during the heat shock response, an insertion mutant with a mutation in the hsp16.6 gene was constructed by inserting the kanamycin resistance gene at the SmaI site in the opposite orientation, as described in Materials and Methods. The mutant cells grew normally in CYE liquid medium at 30°C (data not shown). 2D gel electrophoresis demonstrated that Mx Hsp16.6 was not present in the mutant cells after heat shock, whereas the expression of other HSPs, such as DnaK, GroEL1, GroEL2, and GroES, was not affected by the hsp16.6 insertion mutation (data not shown).
Next, the viability of the mutant cells was compared with that of the parent cells before and after heat shock (Fig. 3A and B). No difference in the viability between the mutant and parent cells was observed before a heat shock. However, the viability of the mutant cells was 53% at 60 min after a heat shock at 40°C, while that of the parent cells was 73% (Fig. 3A). Furthermore, a heat shock at 42°C had a more severe effect on the viability, since the mutant cells showed 40 and 17% viability at 15 and 60 min after the heat shock, respectively, whereas the parent cells exhibited 70 and 50% viability, respectively (Fig. 3B). These results suggest that Mx Hsp16.6 is critical for viability during a heat shock.
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FIG. 3. Effects of Mx Hsp16.6 on thermotolerance (A and B) and acquired thermotolerance (C and D). The parent strain and the hsp16.6 mutant were grown to a density of approximately 3 x 108 cells per ml. Cell viability was assayed by determining colony formation on CYE medium plates as described in Materials and Methods. (A and B) Thermotolerance. The cells were viable after heat shock at 40°C (A) and 42°C (B). , parent cells; , mutant cells. (C and D) Acquired thermotolerance: cell viabilities with (C) and without (D) pretreatment at 40°C. The arrows indicate when cultures were shifted to the temperatures indicated. and , preheated cells; and , cells that were not preheated. The average viable colony counts were obtained by performing three independent experiments.
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Localization of Mx Hsp16.6. It is known that sHSPs form large oligomers consisting of 9 to >32 monomers that interact with denatured proteins. In addition, the sHSPs are localized in the membrane and stabilize it during heat shock. We fractionated the cellular proteins and examined the localization of Mx Hsp16.6 (Fig. 4). The size of the pellet fraction obtained after low-speed centrifugation increased dramatically after a heat shock (data not shown), indicating that the proteins denatured by the heat shock formed large aggregates. Nearly 90% of the Mx Hsp16.6 was detected in the pellet fraction after the heat shock, and about 10% was in the membrane fraction. Mx Hsp16.6 was not detected in the supernatant fraction. These results suggest that most of the Mx Hsp16.6 was localized in aggregates with the heat-denatured proteins, while some was present in the membrane.
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FIG. 4. Cellular location of Mx Hsp16.6 as determined by Western blot analysis. Fractionation was performed using cells that were heat shocked for 30 and 60 min at 42°C. The total cell extract was fractionated into supernatant (cytoplasmic), pellet, and membrane fractions. Mx Hsp16.6 was detected by Western blot analysis using an anti-Mx Hsp16.6 IgG.
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FIG. 5. Immunocytochemical detection of Mx Hsp16.6 in parent and mutant cells before and after a heat shock for 60 min at 42°C. Bar = 0.5 µm.
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-crystallin domain, in which the highly conserved motif AXXXXGXL and hydrophobic residues involved in maintaining the tertiary structure of the folding monomer are conserved. Mx Hsp16.6 was detected in the pellet fraction obtained by low-speed centrifugation and was observed in large particles by immunoelectron microscopy, suggesting that Mx Hsp16.6 forms large complexes with heat-denatured proteins and prevents irreversible denaturation of proteins caused by heat shock. Furthermore, the mechanism of the chaperone activity of Mj HSP16.5 was investigated using the single-chain molecule monellin, which was found to bind and prevent the formation of insoluble aggregates (13). Since Mx Hsp16.6 was induced by heat shock but not by other stresses, such as starvation, oxidation, and high osmolarity, and was essential for viability during heat shock, it appears that Mx Hsp16.6 plays critical roles under heat stress conditions. It is proposed that sHSPs function as ATP-independent chaperones to prevent irreversible protein aggregation of heat-denatured proteins and facilitate subsequent protein renaturation in cooperation with ATP-dependent chaperones. It has been shown that substrates bound to Mj HSP16.5 on the outside surface of the sphere at high temperatures are prevented from forming insoluble aggregates in vitro (13). Recently, the proteins associated with Hsp16.6 from Synechocystis sp. strain PCC6803 during heat stress were identified, and they could be released from Hsp16.6 by the ATP-dependent activity of DnaK and cochaperones (2). These proteins are involved in transcription, translation, signal transduction, and secondary metabolism, which are essential for cellular viability. Since such versatile proteins form complexes with sHSPs during heat shock, it is reasonable to speculate that the hsp16.6 mutant cells lost viability during heat shock due to irreversible aggregation of a set of proteins essential for cellular viability in the mutant cells.
It has been reported that SP21 of S. aurantiaca, which is induced by heat shock, by oxidative stress, and during development, was detected at the cell periphery in heat-shocked cells and cells induced by indole for 6 h by immunoelectron microscopy. Furthermore, SP21 was predominantly located at the cell wall of spores produced during fruiting body formation (14). Even though M. xanthus and S. aurantiaca are closely related myxobacterial species and the
-crystallin domains of Mx Hsp16.6 and Sa SP21 exhibit 61.1% identity, they appear to behave differently. Since the sHSP from Synechocystis sp. was found not only to have protein-protective activity but also to stabilize lipid membranes (22), the small amount of Mx Hsp16.6 localized in the membrane may be involved in stabilization of the membrane during heat shock.
Primer extension analysis showed that the hsp16.6 gene was expressed during heat shock but not during other stress responses, such as the responses to starvation, oxidation, osmotic shock, and differentiation. Many HSPs are known to be expressed under normal conditions, whereas Mx Hsp16.6 is not detectable during normal vegetative growth. Based on characterization of the insertion mutant, Mx Hsp16.6. is neither essential for housekeeping nor necessary for the responses to starvation, oxidative stress, high osmolarity, and differentiation. However, Mx Hsp16.6 is essential for viability during heat shock.
It is likely that induction of the hsp16.6 gene is regulated at the transcriptional level. M. xanthus contains three homologs of heat shock sigma factors found in bacteria (24). However, they are neither heat shock inducible nor necessary for the production of HSPs. Recently, we identified a sigma factor that shows some similarity to heat shock sigma factors, but we found that it was not necessary for the production of HSPs (26). In addition, no other homologs of heat shock sigma factors were found in the M. xanthus genome (data not shown). Thus, it is likely that heat shock response transcription in M. xanthus is driven by unique systems. In M. xanthus, only one heat shock gene, lonD, has been characterized for its heat shock response transcription (25). The 35 and 10 promoter elements of lonD show some similarity with those of a non-heat shock gene, vegA, while the transcription of lonD is induced via a cis element activated by a two-component system, HsfA and HsfB. Although one of the hsp16.6 promoter sequences (sequence b), which induced weaker expression than the other promoter sequence (sequence a), exhibits high levels of similarity with sequences of the lonD promoter and the vegA promoter (Fig. 2B), no sequence similar to the lonD cis element is present in the hsp16.6 promoter. In addition, the stronger promoter (sequence a) of the hsp16.6 gene exhibits little similarity with other known promoters, including the heat shock promoters in other bacteria. Furthermore, some heat shock genes are known to be repressed via inverted repeat sequences bound by repressor proteins during normal growth (20). Such sequences are not found in the hsp16.6 promoter. Since the expression of the hsp16.6 gene seems to be regulated by unknown mechanisms, further studies are necessary to elucidate hsp16.6 expression.
The results of the current study indicate that large quantities of Mx Hsp16.6 are induced immediately after heat shock and that Mx Hsp16.6 prevents irreversible aggregation by forming large complexes with denatured proteins to acquire thermotolerance. We are currently investigating the chaperone activity of Mx Hsp16.6 and proteins that associate with Mx Hsp16.6 during heat shock to elucidate the roles of Mx Hsp16.6 in M. xanthus.
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