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Journal of Bacteriology, September 2005, p. 6466-6478, Vol. 187, No. 18
0021-9193/05/$08.00+0 doi:10.1128/JB.187.18.6466-6478.2005
Elizabeth R. Fischer,2
David J. Mead,1 and
Ted Hackstadt1*
Host-Parasite Interactions Section, Laboratory of Intracellular Parasites,1 Microscopy Branch, National Institutes of Allergy and Infectious Diseases, Rocky Mountain Laboratories, Hamilton, Montana 598402
Received 24 February 2005/ Accepted 5 July 2005
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One mechanism to induce host cell alterations is through the use of a type III secretion system (T3SS). Type III secretion (T3S) is a recognized virulence determinant among multiple gram-negative pathogens of both plants and animals, where contributions to pathogenesis are manifested primarily by the deployment of antihost proteins termed effectors (24). This complex machinery enables secretion of effectors from bacteria, followed by translocation through a host membrane barrier to the host cell cytoplasm, where the effectors target specific cellular processes relevant to the respective pathogen. Chlamydiae express a functional T3SS (12, 23) that is available to deploy effector proteins throughout the developmental cycle (10). Chlamydia spp. exploit a host niche unique among type III-expressing pathogens. Although components of the Chlamydia T3SS basal apparatus are identifiable in sequenced genomes (25, 36, 42) due to homology to components in other T3SSs, gene products with obvious similarity to known effector proteins are not evident. Identification of Chlamydia effectors is further complicated by the fact that the primary sequences of T3S substrates lack obvious consensus secretion signals. Significantly, chaperone-mediated secretion of effectors is a common theme in characterized T3SSs, and chlamydial genomes contain genes encoding proteins with both structural and sequence similarities to characterized T3S chaperones.
T3S-specific chaperones are a diverse group of proteins that share limited sequence similarity but function by associating with cytoplasmic pools of T3S substrates to promote their secretion or prevent premature association with one another (9). These secretion substrates include antihost effectors as well as proteins involved in translocating those secreted effectors into host cells. Unlike general chaperones, T3S chaperones are specific, associating with one or sometimes two secretion substrates, resulting in each secreted effector having a dedicated chaperone. T3SSs are exquisitely controlled such that secretion activity of the apparatus is intimately coupled to gene regulation. In addition to facilitating secretion, a subset of described T3S chaperones is also required for the proper regulation of T3S expression through involvement in complex feedback cascades (16). These chaperones are proposed to be fundamentally different from those exerting activity solely as facilitators of secretion (33).
Scc1, Scc2, and Scc3 (specific chlamydia chaperones) have been implicated as T3S-associated chaperones, based on sequence and structural similarities to known chaperones in other T3SSs (10, 12, 23). Scc1 is homologous to the monospecific effector chaperone SycE of Yersinia spp., whereas both Scc2 and Scc3 are homologous to a family of bifunctional chaperones exemplified by SycD of Yersinia spp., SicA of Salmonella spp., and IpgC of Shigella spp. (34). In these systems, the chaperone interacts with and serves as a secretion pilot for a conserved set of translocator proteins termed YopB and YopD for Yersinia, SipB and SipD for Salmonella, and IpaB and IpaC for Shigella. Once secreted, respective translocator pairs may associate, are essential for effector protein translocation, and have been implicated as components of a host membrane-localized pore (24). SycD and its Salmonella or Shigella homologs remain in the bacterial cytoplasm and contribute to repression (SycD) or activation (SicA and IpgC) of T3S gene expression (reviewed in reference 34).
Given the importance of the SycD class of T3S-specific chaperones and the lack of identified Chlamydia T3S substrates, we examined the possibility of exploiting the potential chaperone activities of Scc2 and Scc3 to identify novel secreted Chlamydia proteins. We investigated whether Scc2 and Scc3 have SycD-like activities in the heterologous Yersinia T3SS and report here results that are consistent with Scc2 and Scc3 having active roles in T3S. Both Scc2 and Scc3 interacted with the translocator protein YopD in Yersinia, and further analysis of Scc2 and Scc3 led to the identification of CopB and CopB2 as components of the Chlamydia T3SS. Both a CopB-containing protein and a truncated CopB2 were type III secreted when expressed in Yersinia, and based on localization in infected cells, native CopB and CopB2 were translocated by Chlamydia. These results extend the characterization of the Chlamydia T3SS and demonstrate the utility of chaperones as tools in the discovery of T3S-specific substrates.
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TABLE 1. Bacterial strains and plasmids
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TABLE 2. Cloning primer sets
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-FlagM2 resin (Sigma) columns, followed by elution of bound protein with 100 mM glycine, pH 3.0. Eluates were neutralized by addition of Tris (Sigma), pH 8.0, to 50 mM and then dialyzed against phosphate-buffered saline (PBS) (135 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, 1.8 mM KH2PO4, pH 7.4). Single-step purification of His6-tagged SycD used in antibody production was accomplished by using Talon (CLONETECH, Palo Alto, CA) metal affinity resin essentially as described previously (12), followed by dialysis into PBS. All isolated recombinant proteins were assayed for purity by Coomassie staining of sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE)-resolved proteins (data not shown). Identities of respective proteins were confirmed by mass spectroscopy of gel-extracted, trypsin-treated proteins as described previously (46), using a Voyager-DE STR matrix-assisted laser desorption ionization-time-of-flight mass spectrometer (PerSeptive Biosystems) and the Protein Prospector MS-Fit (University of California, San Francisco) database. Yersinia physiological studies. Physiological studies examining potential roles of chlamydial type III chaperones were performed with Y. enterocolitica. Strains were cultivated in HIB (without Ca) at 26°C for ca. 10 generations, diluted into fresh Ca2+ and +Ca2+ HIB to an optical density at 620 nm (OD620) (A620) of 0.05, and cultivated for an additional 2 h at 26°C. Cultures were then shifted to 37°C, and IPTG was added to appropriate levels. At 4 h after temperature shift to 37°C, total-culture (TC) samples were harvested or cultures were separated into cell-free supernatants (CS) and whole-cell (WC) pellets by centrifugation. Cell pellets were treated for coprecipitation studies (see below), or total proteins were precipitated by addition of trichloroacetate (TCA; Fisher) to 10% (vol/vol) to respective culture fractions. TCA-precipitated proteins were solubilized in electrophoresis sample buffer (2.3% [wt/vol] SDS, 5% [vol/vol] ß-mercaptoethanol, 25% [vol/vol] glycerol, and 60 mM Tris [pH 6.8]). Type III secretion of chlamydial proteins was tested as described previously (12), by heterologous expression in Y. pseudotuberculosis cultivated in +Ca2+ or Ca2+ HIB, and processed exactly as described above.
Chlamydia coprecipitation assays.
A mixture of C. trachomatis L2 RBs and EBs was harvested by release from 24-h cultures with a Kontes homogenization and purification in RenoCal-76 density gradients as described previously (7). Purified chlamydiae were suspended in ice-cold lysis solution (5 mM dithiothreitol, 200 mM NaCl) containing protease inhibitors, incubated on ice for 2 h, and homogenized through a 25-gauge needle. Debris were precipitated by centrifugation for 15 min at 16,000 x g, and cleared lysates were combined with 5 µg of Flag-tagged Scc1, Scc2, or Scc3 and dialyzed against PBS overnight at 4°C. Flag-tagged proteins were purified over
-FlagM2 resin as described above, and resulting material was analyzed by immunoblotting.
Antibody production and immunodetection. SycD- and Scc3-specific polyclonal antibodies were raised by immunizing female New Zealand White rabbits with pure HT-SycD or Scc3-FT, respectively, as described previously (39). Rabbit polyclonal antibodies specific for C. trachomatis L2 CADD (NH2-DEENGYPNHIDLWKQC-COOH), CopB (NH2-TRQNRDDLSMESDVA-COOH), and CopB2 (NH2-HSQQPSHKIQRRKERC-COOH) peptides conjugated to keyhole limpet hemocyanin were generated commercially by Sigma Genosys. Specificities of antibody preparations were confirmed by immunoblot analysis of SDS-PAGE-resolved whole-cell lysates of E. coli TOP10 F' expressing the respective target protein or a vector-only control (data not shown).
Proteins were analyzed by immunoblotting with resolution in SDS-PAGE (27) gels (12% [vol/vol] polyacrylamide) and subsequent transfer to Immobilon-P (Millipore Corp.) in carbonate buffer (10 mM NaHCO3, 3 mM Na2CO3, 10% methanol, pH 9.9). Specific proteins from Yersinia cultures were detected by probing with
-Flag M2 (Sigma),
-ß-lactamase (5'
3'; Boulder, CO),
-HT-SycD, or
-YopD and
-YopE (kind gifts from G. Plano). Material from C. trachomatis coprecipitation assays was probed with
-HT-CopB (10),
-CopB2, or
-Hsp60 (47). Unless otherwise noted, proteins were visualized by using alkaline phosphatase-conjugated goat anti-rabbit immunoglobulin G (IgG; Sigma), followed by development with nitroblue tetrazolium-5-bromo-4-chloro-3-indolylphosphate (NBT-BCIP; Gibco-BRL). Indirect immunofluorescence of methanol-fixed material was employed as described previously (12) to test protein localization in C. trachomatis L2-infected HeLa monolayers cultivated on 12-mm coverslips. Scc2, Scc3, CopB, and CopB2 were detected with
-HT-Scc2 (10),
-Scc3-FT,
-CopB (
-peptide), and
-CopB2, respectively, and visualized by probing with Texas Red-conjugated goat anti-rabbit antibodies (Jackson ImmunoResearch). Fluorescent and Nomarski images were acquired using a 60x apochromat objective on an FXA photomicroscope (Nikon) and digitized via a Dage-MTI CCD 72 camera with a DSP2000 image processor. CopB distribution was further examined via immunoelectron microscopy. HeLa cells were cultured on Thermonox coverslips (Nunc) and infected with C. trachomatis L2 for ca. 18 h. Cultures were fixed with periodate-lysine-paraformaldehyde and processed essentially as described previously (39). CopB was detected using
-CopB (
-peptide), peroxidase-conjugated F(ab')2 donkey
-rabbit IgG (Jackson ImmunoResearch Laboratories), and Immunopure metal enhancement DAB substrate (Pierce Chemical). An RMC MT-7000 ultramicrotome was used to cut ca.-70-nm sections that were counterstained with 1% (wt/vol) uranyl acetate and Reynolds lead acetate. Samples were observed at 80 kV with a Philips CM-10 transmission electron microscope. Micrographs were processed using Adobe Photoshop 5.0 (Adobe Systems).
Alpha-toxin permeabilization.
A biochemical assay to examine proteins exposed to the host cytoplasmic compartment was developed by using selective permeabilization of the plasma membranes with staphylococcal alpha-toxin. HeLa cell monolayers were cultivated in 6-well cluster dishes and mock treated or infected with C. trachomatis L2 for 24 h. Monolayers were washed twice with 37°C HBSS and then treated with 1.0 ml HBSS or HBSS containing 50 µg alpha-toxin (Calbiochem) for 2 h at 37°C. Culture supernatants were removed, passed through a 0.22-µm filter, and stored on ice for lactose dehydrogenase (LDH) activity assays. Monolayers were gently washed with 37°C HBSS and then treated for 30 min at ambient temperature with 1.0 ml HBSS with or without 750 µg NHS-S-S-biotin [sulfosuccinimidyl-2-(biotinamido)ethyl-1,3-dithiopropionate; Pierce Chemical]. Culture supernatants were removed and replaced with 2.0 ml RPMI plus 5% bovine serum albumin (wt/vol) for 5 min to quench unreacted biotinylating reagent. Monolayers were gently washed two additional times with HBSS, and cells were lysed by treatment with 650 µl/well of ice-cold H2O containing 0.1% Triton X-100 (vol/vol) and 150 mM NaCl. Lysates were collected and centrifuged at 16,000 x g for 15 min, and 150 µl was stored on ice for ATP assays, while the remaining 500 µl was combined with an equal volume of 100 mM Tris, pH 7.4, for precipitation of biotinylated proteins. NHS-S-S-biotin-labeled proteins were specifically purified by incubating lysates with NeutrAvidin-agarose beads at 4°C overnight, followed by extensive washing with PBS and solubilization in electrophoresis sample buffer. Isolated material was resolved by SDS-PAGE, and detection of specific proteins was accomplished by using
-MOMP (3),
-EF-Tu (48),
-Hsp60,
-CADD, or
-CopB2, followed by peroxidase-conjugated goat anti-rabbit IgG and chemiluminescent development with Super Signal reagent (Pierce Chemical). ATP and LDH concentrations were determined according to the manufacturer's instructions by use of an ATP bioluminescence assay kit (CLS II; Roche) and an LDH diagnostic kit (Sigma), respectively.
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helix. Taken together, the sequence data suggest that Scc2 and Scc3 may share basic functions with Yersinia SycD but have the capacity to mediate unique and possibly novel effects.
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FIG. 1. Comparison of C. trachomatis Scc2 and Scc3 with Yersinia SycD. (A) Schematic representations of proteins, indicating numbers of total residues. Vertical bars bracket domains in which sequence similarities are found. Respective TPR are shown as shaded areas, and amphipathic helices are represented by red boxes. (B) Amphipathic characters of predicted helices are shown in helical wheel projections (http://cti.itc.virginia.edu/ cmg/Demo/wheel/wheelApp.html), where nonpolar residues are shown in orange, polar, uncharged residues in green, acidic residues in pink, and basic residues in blue. Residue numbers of corresponding domains are provided for respective proteins. a.a., amino acids.
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sycD strain with in vitro growth assays commonly used to study regulation of T3S expression and activity (Fig. 2). Y. enterocolitica
sycD or Y. enterocolitica
sycD expressing pSycD-FT, pScc2-FT, or pScc3-FT was cultivated in Ca2+-supplemented or -deficient HIB, and bacterial growth was evaluated by measuring culture optical density (Fig. 2A). As expected, Yersinia
sycD displayed growth restriction in both the presence and the absence of Ca2+, whereas the wild-type strain maintained logarithmic growth in the presence of Ca2+. Ectopic expression of SycD in the
sycD strain resulted in full complementation of the growth phenotype. Although Yersinia
sycD expressing Scc2 or Scc3 displays growth restriction at a slightly higher A620 than does
sycD, Ca2+-dependent growth was not restored. Yersinia YopE is an endogenous, Ca2+-regulated T3S substrate. We examined levels of YopE secretion by immunoblotting of SDS-PAGE-resolved cell-free culture supernatants (Fig. 2B) to test directly whether Scc2 or Scc3 compensates for SycD in Ca2+ regulation. Consistent with growth data, expression of SycD-FT restored Ca2+-regulated secretion of YopE in the
sycD strain, since YopE was only detected in the Ca2+ culture supernatant. In contrast, the presence of neither Scc2-FT nor Scc3-FT prevented YopE secretion in the presence of Ca2+. Based on these data, we conclude that neither Scc2 nor Scc3 was able to restore full Ca2+ regulation in Yersinia
sycD, indicating that the chlamydial proteins cannot substitute for the role of SycD in Ca2+ regulation.
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FIG. 2. Complementation analysis of Y. enterocolitica sycD. The Y. enterocolitica wild type (W22703) and sycD ( sycD) expressing vector alone or SycD-FT, Scc2-FT, or Scc3-FT were cultivated with 0.1 mM IPTG and in the presence ( [black lines] or +) or absence ( [grey lines] or ) of 2.5 mM Ca2+. Bacterial growth experiments were repeated four times, and a representative data set in which growth was plotted hourly by measuring optical density at A620 is shown (A). Cultures were harvested 4 h after temperature shift (indicated by arrows) to 37°C, and material corresponding to 0.05 OD620/ml of cell-free culture supernatants was resolved in 12% (wt/vol) polyacrylamide gels (B). The immunoblot was analyzed using -YopE, and proteins were visualized by probing with alkaline phosphatase-conjugated secondary antibodies, followed by development with NBT-BCIP.
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sycD cultivated in conditions repressive (+Ca2+) or inductive (Ca2+) for T3S expression. TC levels of Flag-tagged proteins and Yops E and D, and CS levels of YopD, were assayed by immunoblotting as a sensitive test for the ability of expressed gene products to complement the sycD null phenotype (Fig. 3). Similarly, Flag-tagged C. trachomatis Scc1, which is not homologous to SycD, was expressed as a negative control. Comparable levels of all Flag-tagged proteins were detected by Flag-specific immunoblotting with respective culture lysates. As expected, YopD was detected in culture supernatants and YopE and YopD levels were elevated in Ca2+ cultures containing wild-type Y. enterocolitica, whereas no significant levels of YopD secretion or increases in YopE or YopD levels were detected in the sycD null strain. Wild-type, Ca2+-regulated secretion of YopD and expression patterns of Yops E and D and were restored in the presence of SycD-FT. Compared to the sycD parent, YopE levels remained unaltered in the presence of Scc1-FT, Scc2-FT, and Scc3-FT. Significantly, an overall increase in YopD was detected in cultures expressing Scc3-FT, and Ca2+-regulated secretion of YopD was restored, though much lower levels of secreted YopD were detected in cultures expressing Scc3-FT than in the wild type. Immunoblots were subsequently probed with ß-lactamase-specific antibodies to test for nonspecific leakage of bacterium-associated proteins into culture supernatants. Although significant signal was detected in bacterium-containing lysates, none was detected in culture supernatants. These data suggest that, like SycD, the presence of Scc3 results in stabilization of intracellular YopD, yet Scc3 fails to elicit the regulatory effects manifested by SycD in this system.
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FIG. 3. Complementation of YopD secretion. Y. enterocolitica sycD expressing SycD-FT, Scc1-FT, Scc2-FT, and Scc3-FT or Y. enterocolitica WT and sycD ( sycD) were cultivated in the presence (+) or absence () of 2.5 mM Ca2+. Cultures were incubated at 26°C for 2 h and then shifted to 37°C. IPTG was added to 0.1 mM at the time of temperature shift to achieve induction of trans genes. After 4 h of growth at 37°C, 1.0-ml volumes were harvested and directly precipitated with TCA for TC samples or fractionated into samples representing CS prior to concentration. Material corresponding to 0.05 OD620/ml of original cultures for CS and 0.02 OD620/ml for TC was resolved in 12% (wt/vol) polyacrylamide gels. Flag-tagged SycD, Scc1, Scc2, and Scc3 were detected by immunoblotting with -Flag M2, and YopD and YopE were detected with -YopD and -YopE, respectively. Immunoblots were probed with ß-lactamase-specific antibodies as a control for cell lysis. Proteins were visualized by probing with alkaline phosphatase-conjugated secondary antibodies and development with NBT-BCIP.
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sycD expressing SycD-FT, Scc1-FT, Scc2-FT, or Scc3-FT were harvested, and proteins were immunoprecipitated from cleared lysates of disrupted cells by using Flag-tag-specific antibodies (Fig. 4A). All Flag-tagged proteins were detected by immunoblotting of specifically precipitated material. One lane of the immunoblot was loaded with a whole lysate from the Y. enterocolitica wild type as a control for antibody reactivity, and a YopD-specific signal was detected in this lane and in lanes containing SycD-FT, Scc2-FT, and Scc3-FT, but not Scc1-FT. The presence of YopD was specific since YopE was detected only in the whole-lysate control and not in immunoprecipitated material. A reciprocal experiment was performed, in which YopD was specifically immunoprecipitated to confirm the copurification of Scc2-FT and Scc3-FT (Fig. 4B). Flag-tagged proteins were additionally expressed in Y. enterocolitica
yopD as an antibody specificity control. Recovery of YopD was detected by immunoblotting of precipitated material from the yopD-containing strain. Scc2-FT, Scc3-FT, and the positive control SycD-FT were readily detectable in preimmunopreciptate lysates and in material containing YopD. Precipitation was YopD dependent, since none of these proteins were detected in samples derived from Y. enterocolitica
yopD. Similar results were obtained from immunoprecipitations from Ca2+ cultures (data not shown). Taken together, these data provide strong evidence that Chlamydia Scc2 and Scc3 interact with the T3S substrate YopD.
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FIG. 4. Scc2 and Scc3 coprecipitate with YopD. Cleared lysates of Y. enterocolitica sycD ( sycD) or yopD ( yopD) expressing vector or Flag-tagged proteins were generated from +Ca cultures (cultivated in the presence of 0.1 mM IPTG) harvested 4 h after temperature shift. (A) Flag-tagged proteins were immunoprecipitated from lysates with -FlagM2 resin, and purified material was examined by immunoblotting with Flag-tag-specific antibodies ( -FT), -YopD, or -YopE. A lane containing a WC lysate from WT Y. enterocolitica was included as a positive control for -YopD or -YopE reactivity. (B) YopD was specifically immunoprecipitated by addition of -YopD protein A-conjugated beads to lysates. Proteins in precipitate material (Ippt) were detected by immunoblotting with -YopD or -FT. Parallel TC lysates were also generated from cultures and probed by immunoblotting with -FT. Proteins were visualized by probing with alkaline phosphatase-conjugated secondary antibodies, followed by development with NBT-BCIP.
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Given their conserved positioning near a sycD-like gene and structural similarities to the YopB family of proteins, we tentatively designated CT578 and CT861 CopB and CopB2, respectively, and then tested whether either associated with Scc2 or Scc3 (Fig. 5). To test for specific interactions, Scc2-FT and Scc3-FT were purified from E. coli and equivalent amounts were separately mixed with cleared C. trachomatis L2 culture lysates. Treatments with additions of PBS (mock) or Scc1-FT served as negative controls. After overnight incubation, Flag-tagged proteins were purified over
-FTM2 affinity columns and eluted material was resolved in SDS-PAGE gels for immunoblot analysis. Lysates from whole uninfected or C. trachomatis-infected HeLa cultures were resolved as antibody specificity controls. Scc1-FT, Scc2-FT, and Scc3-FT were detected in
-FT immunoblots, indicating successful isolation from C. trachomatis extracts. We were unable to detect copurification of CopB2 in any treatment, and this was not due to protein instability, since CopB2 was detectable in column flowthrough fractions (data not shown). CopB, however, was present in material containing either Scc2 or Scc3 but not in material containing Scc1 or in mock samples. This copurification was specific since C. trachomatis Hsp60 was not detectable in corresponding material. (A crossreactive band corresponding to antibody heavy chain is faintly visible in all precipitated material probed with Hsp60- and CopB2-specific antibodies.) Although these data do not differentiate between direct and indirect interactions, they do indicate that either Scc2 or Scc3 can associate with CopB.
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FIG. 5. Scc2 and Scc3 coprecipitate CopB from C. trachomatis-containing lysates. Scc1-FT, Scc2-FT, Scc3-FT, and PBS as a mock-treated control (Mock) were incubated with cleared lysates from purified C. trachomatis RB and EB developmental forms. Flag-tagged proteins were purified by addition of -FlagM2 resin, and material was analyzed by immunoblotting with CopB-, CopB2-, Hsp60-, or FT-specific antibodies. Lanes containing whole-culture lysates from mock-infected (HeLa) or C. trachomatis-infected (HeLa + L2) HeLa cell cultures were included as a control for antibody specificity. Proteins were visualized by probing with alkaline phosphatase-conjugated secondary antibodies, followed by development with NBT-BCIP.
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FIG. 6. CopB and CopB2 are T3S substrates. Y. pseudotuberculosis YPIII pIB102 (WT) expressing pCopBnpt, pCopB2NT, pScc2-FT, pScc3-FT, or YPIII pIB68 (yscS) expressing pCopBnpt or pCopB2NT were cultivated in HIB in the presence (+) or absence () of 2.5 mM Ca2+ (lanes 5 to 8). Strains expressing vector only as a negative control were included (lanes 1 to 4). After an initial 2-h incubation at 26°C, IPTG was added to 0.1 mM and cultures were shifted to 37°C. Cultures were harvested after 4 h of growth at 37°C and fractionated into samples representing CS and WC. Material corresponding to 0.10 OD620/ml of original cultures for CS and 0.02 OD620/ml for WC was resolved in 12% (wt/vol) polyacrylamide gels and analyzed by immunoblotting with -Flag M2 (A and B) or -SycD (A). For immunoblotting, proteins were visualized by probing with alkaline phosphatase-conjugated secondary antibodies, followed by development with NBT-BCIP. C.t., C. trachomatis.
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FIG. 7. Immunolocalization of Scc2, Scc3, CopB, and CopB2 in C. trachomatis-infected HeLa monolayers. Proteins were detected 20 h postinfection via (A) indirect immunofluorescence or (B) immunoelectron microscopy. (A) Immunofluorescent (IFA) and Nomarski (DIC) images of individual inclusions are shown. Proteins were visualized by probing with Texas Red-conjugated secondary antibodies. Bar = 5 µm. (B) CopB was specifically stained by the immunoperoxidase method and examined by transmission electron microscopy. Arrows indicate the CopB-specific signal localized to the inclusion membrane. Bar = 1 µm.
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TABLE 3. ATP retention and LDH release
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FIG. 8. Accessibility of CopB2 to NHS-S-S-biotin in cells permeabilized with staphylococcal alpha-toxin. C. trachomatis-infected (L2) or mock-infected (M) HeLa cultures were treated with HBSS with (+) or without () alpha-toxin ( -Toxin), and susceptible proteins were labeled by addition of NHS-S-S-biotin. Material from whole-culture lysates (first lane M and first lane L2) or containing purified, biotinylated proteins from disrupted cultures was resolved in 12% (wt/vol) polyacrylamide gels and analyzed by immunoblotting using -CopB2 or antibodies specific for bacterium-associated proteins MOMP, EfTu, and Hsp60 or extrainclusion-localized Chlamydia CADD. Proteins were visualized by probing with horseradish peroxidase-conjugated secondary antibodies, followed by chemiluminescent development with Super Signal substrate. All images are taken from equivalent exposures.
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By focusing on Chlamydia SycD homologs, we were afforded the opportunity to examine multiple functions in evaluating the capacity of Scc2 or Scc3 to complement sycD null Y. enterocolitica. SycD binds the translocator proteins YopB and YopD and is required for their intracellular stability and eventual secretion. SycD also contributes to repression of T3S gene expression directly (15) or in conjunction with YopD (2, 45). During in vitro growth,
sycD yersiniae display growth restriction and secretion of a subset of Yops regardless of Ca2+ levels (5). Expression of neither Scc2 nor Scc3 restored a Ca2+-dependent growth phenotype or Ca2+-regulated secretion of the effector protein YopE (Fig. 2). We chose to test effects on YopD to more closely examine potential Scc2- or Scc3-specific effects, since SycD interacts with discreet YopD domains (14) but associates with YopB more promiscuously (32) and possibly with lower affinity (14). Indeed, our coprecipitation analysis (Fig. 4) indicated that both Scc2 and Scc3 interact with YopD. The interaction between Scc3 and YopD seems to be functional, since secretion of YopD was detected in the presence of Scc3 (Fig. 3). Interestingly, secretion of YopD was observed only in cultures lacking Ca2+, raising the possibility of Scc3-dependent, Ca2+-regulated secretion. This possibility, however, is difficult to ascertain given the phenotype of
sycD yersiniae. Although Yops are expressed constitutively in
sycD strains and secretion of some proteins (YopH, LcrV, and YopK) occurs completely independently of Ca2+, secretion of other T3S substrates (YopM, YopN, and YpKA) remains regulated comparable to secretion in the wild type (15). We saw no effect of Scc3 on YopE secretion (Fig. 2B), and analysis of culture supernatants by Coomassie staining of proteins indicated that Scc3 did not alter the deregulated secretions of YopH, LcrV, and YopK (data not shown). Hence, the secretion effect was specific to YopD. We believe that, given the lack of a global effect on the regulation of Yop secretion, the presence of YopD in Ca2+ culture supernatants most likely reflects only a secretion chaperone activity of Scc3. According to our current data, neither Scc2 nor Scc3 is able to complement the regulatory defects of
sycD yersiniae. Like SycD, Scc2 and Scc3 possess the ability to interact with T3S substrates and could therefore serve as chaperones.
We also observed a Scc3-dependent increase in levels of cell-associated YopD irrespective of Ca2+. Although we did not rule out an effect of Scc3-FT on yopD expression, it seems likely that, given the known role of SycD and our coprecipitation data, the observed effect is manifested through an interaction of Scc3 with YopD. We cannot definitively explain why trans expression of Scc3 resulted in higher levels of detectable YopD than in the presence of SycD. Immunoblots with Flag-specific antibodies show possibly higher absolute amounts of Scc3 than of SycD in this experiment. However, this effect on YopD levels was reproducible, and given that SycD is multifunctional and binds several T3S-associated proteins, it is possible that there is less SycD (than Scc3) available to stabilize YopD. If Scc3 is only capable of binding YopD, this could result in greater amounts of YopD. Scc2 clearly did not have this effect. YopD contains at least two SycD binding sites (14), and it is possible that that the inability of an Scc2 interaction to stabilize YopD reflects an association with a different domain than that associated with Scc3. Levels of coprecipitated protein did not differ significantly (Fig. 5), suggesting that lack of YopD stability and secretion is not due to a fundamentally "weaker" interaction with Scc2.
Scc2 and Scc3 are significantly divergent from each other and SycD such that it is probable that they contribute uniquely to the Chlamydia T3SS. It was therefore surprising that our data indicated that either Scc2 or Scc3 could interact with CopB in Chlamydia. However, scc2 is a late-cycle gene, whereas scc3 is first expressed during mid-cycle development of the L2 serovar (10). Moreover, microarray analyses indicate differences in the expression kinetics of scc2 and scc3 in C. trachomatis serovar D (4). It is possible that interactions of Scc2 or Scc3 with CopB occur at different times in the developmental cycle and have distinct effects. The N-terminal domains unique to Scc2 and Scc3 do not share significant sequence similarity and could potentially confer the capacity for additional interactions specific to the Chlamydia T3SS. The amphipathic alpha helix predicted in the N terminus of Scc3 supports this hypothesis. The inability of Scc2-FT and Scc3-FT to be secreted by the Yersinia T3SS and their immunolocalization in Chlamydia (Fig. 7) indicate that, like SycD, they function in the bacterial cytosol. However, the deduced Scc3 sequence contains a predicted membrane-interactive hydrophobic domain (residues 104 to 124), and biochemical fractionation indicates that a portion of Scc2 is associated with Chlamydia membranes (10), again raising the possibility of unique character. It should be noted, however, that the corresponding SycD homolog in enteropathogenic E. coli, CesD, is membrane associated (44).
We expressed truncated versions of CopB and CopB2 in Yersinia to avoid toxicity and solubility issues typical of this family of membrane-interactive proteins. Moreover, both full-length CopB and CopB2 contain a high proportion of atypical codons further complicating their characterization. Given the stability of our chimeric CopB-containing protein, we were unable to address potential contributions of Scc2 or Scc3 to CopB turnover. Slepenkin et al. (40) have reported that Scc3 has the capacity to interact with CopN, raising the possibility that a complex cascade of chaperone interactions contributes to a functional T3SS in chlamydiae. We are currently developing a system capable of addressing the functions of these chaperones as they pertain to identified substrates.
We were able to employ the affinities of Scc2 and Scc3 for their effectors in conjunction with expression of putative T3S substrates in the heterologous Yersinia T3SS to identify two new chlamydial type III effector proteins. CopB has low sequence similarity to the pore-forming translocator YopB family of proteins. The rim-like, inclusion membrane-localized distribution of CopB confirms that it is secreted by Chlamydia and is consistent with CopB functioning as an extended component of the T3S apparatus. We were surprised that neither Scc2 nor Scc3 was able to coprecipitate CopB2. Our data, however, indicate that CopB2 gains access to the host cell cytoplasm during a chlamydial infection and that, although this protein lacks similarity to YopB-like proteins, it does possess similar structural characteristics. Interestingly, the Salmonella SipB (21) and Shigella IpaB (8, 22, 43) translocator proteins additionally interact with and activate caspase-1 in eukaryotic cytoplasms. Since Chlamydia infection results in caspase-1 activation (28), it is tempting to speculate that CopB2 may have a role in this process.
Identification of novel T3S substrates is of particular importance and has the capability to significantly advance our understanding of chlamydial pathogenesis. The C. trachomatis genome contains at least seven predicted T3S chaperones (42), and our success in the identification of CopB and CopB2 through investigation of Scc2 and Scc3 demonstrates the utility of studying these proteins. Moreover, the biochemical approach using staphylococcal alpha-toxin permeabilization provides a sensitive means to determine exposure of Chlamydia proteins to the host cytoplasm. Future experiments will exploit these advances to identify additional host-interactive Chlamydia proteins.
-YopD and
-YopE and G. Munson and Katerina Wolf for critical reading of the manuscript.
Present address: Department of Microbiology and Immunology, University of Miami School of Medicine, Miami, FL 33136. ![]()
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