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Journal of Bacteriology, November 2005, p. 7863-7865, Vol. 187, No. 22
0021-9193/05/$08.00+0 doi:10.1128/JB.187.22.7863-7865.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Department of Oral Biology,1 Department of Pathology and Laboratory Medicine, School of Dentistry and School of Medicine, Indiana University, Indianapolis, Indiana 462022
Received 15 April 2005/ Accepted 16 August 2005
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CNBr sequencing (Biochemistry Biotechnology Facility, Indiana University Purdue University at Indianapolis) of the 65-kDa band recovered from separation of SP by sodium dodecyl sulfate (SDS)-polyacrylamide gel electrophoresis resulted in two 11-amino-acid (aa) peptides (MSRQAKAVNIP and MQSPTEFNEDK) (Fig. 1). The gene encoding this SP (SmaA) was localized to the open reading frame (ORF) at position SMU.609 (1) on the S. mutans UA159 genome. This ORF is designated as a "putative 40K cell wall protein precursor" based on sequence homology to the 40-kDa protein (p40f) from S. mutans OMZ175 (7). Visual comparison of the sequences of these homologous ORFs (Fig. 2) revealed that the predicted size difference is actually due to a divergence at a single base, absent in the OMZ175 genome, which produces a reading frameshift and subsequent earlier stop codon in OMZ175. Additional analysis of SMU.609 revealed three copies of a 46-aa repeat region with homology to SH3b, a domain associated with murein hydrolase function (13), and two 88-aa direct repeats of unknown function (Fig. 3).
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FIG. 1. Protein sequence analysis of the 65-kDa surface protein. A. Coomassie blue-stained 10% SDS-polyacrylamide gel of S. mutans surface proteins. Lane 1, OMZ175; lane 3, A32-2; lanes 2 and 4, molecular mass markers (size in kilodaltons indicated on right). Asterisks indicate positions of the 40-kDa and 65-kDa homologs. The 65-kDa band from A32-2 was excised from the gel and sequenced. B. Two 11-aa sequences were obtained by CNBr sequencing of the 65-kDa surface protein from S. mutans A32-2 and were found to contain 78% identity to the homologous sequences from both OMZ175 and UA159. Changes from the UA159 sequence are in italics.
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FIG. 2. Site of OMZ175 deletion mutation. The sequence surrounding the deletion mutation in the OMZ175 gene encoding p40f is compared to the homologous sequence from UA159 encoding SmaA. This deletion leads to an early stop codon in p40f compared to SmaA. The numbering differences reflect different predicted start sites for the two ORFs (not shown).
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FIG. 3. Comparison of direct repeat regions. A. Short repeats (46 aa), three from S. mutans UA159 SmaA (65-1s, 65-2s, and 65-3s), one from S. mutans OMZ175 p40f (40-1s), and four from homologous Streptococcus agalactiae 60-kDa murein hydrolase protein Bsp (9) (Bsp-1s, Bsp-2s, Bsp-3s, and Bsp-4s), compared to the consensus sequence for the SH3b repeat motif. B. Long repeats (88 aa) of S. mutans UA159 SmaA (65-1L and 65-2L) compared to the single homologous sequence from Bsp (Bsp-L). Asterisk, exact match; period, weakly similar; colon, strongly similar.
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Murein hydrolase activity of the SP of S. mutans was examined using the peptidoglycan zymogram assay (Fig. 4). Crude SP-enriched fractions of S. mutans A32-2, UA159, UA159D65::fPcEm, NG8, SrtA (a sortase-knockout mutant of NG8 obtained from Song Lee, Dalhousie University, Halifax, Nova Scotia, Canada), PC3370 (an antigen I/II-knockout mutant of NG8 obtained from L. J. Brady, University of Florida), and OMZ175 (obtained from Suzanne Michalek, University of Alabama at Birmingham) were used as the enzyme sources. The peptidoglycan was obtained from a 3-liter (THB plus 1% dextrose) overnight culture of S. mutans washed in 10 mM HEPES, pH 6.8, and boiled in 4% SDS and 10 mM HEPES for 45 min (12). The mixture was cooled to room temperature and centrifuged at 70,000 x g for 40 min at 20°C, and the pellet was washed with 2 M NaCl. The pellet was weighed and resuspended in 2 M NaCl to a concentration of 185 mg/ml and sonicated for 5 min, on ice, at the maximum setting. The peptidoglycan was treated with 48% hydrofluoric acid (HF) at 4°C overnight and then washed 3x with distilled H2O and resuspended in the original volume of 2 M NaCl. The HF-treated peptidoglycan (0.5 ml) was added to a 7.5% SDS-polyacrylamide gel prior to solidification. The nondenatured SPs were separated on the gel at 150 V for 1 h.
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FIG. 4. Zymogram activity gel. HF-treated peptidoglycan from S. mutans UA159 was incorporated into a 7.5% SDS-polyacrylamide gel. Nondenatured surface proteins were separated on the gel. Lane 1, UA159; lane 2, UA159D65::fPcEm; lane 3, NG8; lane 4, SrtA; lane 5, PC3370; lane 6, OMZ175; lane M, prestained molecular mass markers (kilodaltons). The asterisk indicates the band associated with SmaA.
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Two bacteriolytic bands of similar sizes (107 and 79 kDa) were recently reported using whole-cell S. mutans extracts (14) separated on HF-treated peptidoglycan. Subsequently, the upper band was reported to be associated with AltA (homologous to SMU.689), while the lower band was predicted to be a proteolytic product of AltA (11). Our data suggest that there are two separate autolytic activities present in the SP fractions of S. mutans, one of which is inactivated by a mutation in SMU.609 and is linked to the cell surface via the sortase system.
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