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Journal of Bacteriology, March 2005, p. 1695-1701, Vol. 187, No. 5
0021-9193/05/$08.00+0 doi:10.1128/JB.187.5.1695-1701.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Institute of Genetics, School of Biology, University of Nottingham Medical School, Queen's Medical Center, Nottingham,1 School of Animal and Microbial Sciences, University of Reading, Whiteknights, Reading, United Kingdom2
Received 24 September 2004/ Accepted 17 November 2004
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The molecular mechanisms underlying flagellar torque generation are not fully understood, due mainly to a lack of structural data. For recent reviews, see references 4, 5, 22, and 26. The nonrotating stator component is composed of MotA and MotB proteins, which together form proton-conducting ion channels. MotAB channels encircle the MS ring and C ring at the base of the flagellum. A ring of FliG subunits, attached at their N termini to the MS ring, project into the cytoplasm from the C ring. As protons flow through MotAB, they are thought to transiently bind to and dissociate from a critical aspartate residue (38) located on MotB, inducing conformational changes (17) in the cytoplasmic domain of MotA that are believed to apply force to rotor protein subunits of FliG, thus turning the motor (17, 26). These stator-rotor interactions are mediated by electrostatic forces between oppositely charged residues clustered on a charged ridge located at the FliG C terminus and the cytoplasmic loop of MotA (37). It might be expected that altered conformations of the FliG C terminus, comparing CW and CCW motors, would change the interactions between charged residues on FliG and MotA that might dictate the direction of flagellar rotation.
To investigate this, we cloned R. sphaeroides fliG (RsfliG) and tested the effect on E. coli flagellar rotation and taxis by transcomplementation of an E. coli fliG null mutant with the whole RsfliG sequence and an E. coli-RsfliG chimera containing the C-terminal domain of R. sphaeroides FliG (RsFliG), in comparison to wild-type E. coli FliG (EcFliG).
We found that although whole RsFliG could not complement an E. coli fliG null mutant, it was complemented and flagellar synthesis, motility, and limited chemotaxis were restored by the introduction of an E. coli-RsFliG (EcRsFliG) chimera. These data show for the first time that a flagellar rotor protein domain from an
-proteobacterium with unidirectional flagella has not become evolutionarily specialized and can support bidirectional flagellar rotation in a
-proteobacterium.
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TABLE 1. Bacterial strains and plasmids used in this study
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Cloning and disruption of RsfliG. RsfliG was first identified by chromosome walking from fliI, which we had previously identified (12). RsfliG was subcloned (Fig. 1) as a 5.5-kb EcoRI fragment into pUC19 (to give p5.5) from a single 25-kb cosmid insert (from a wild-type R. sphaeroides WS8 cosmid gene library) that complemented an fliI transposon mutant (11). For inactivation of RsfliG, a 1.41-kb SacI-EcoRI fragment was PCR amplified (forward primer, 5'-ATGATCGCGGCCGAGCTCGACACCGTGAA-3' [SacI site underlined]; and reverse primer, 5'-AGCCGCAGGAATTCCTCGCGCGCGT-3' [EcoRI site underlined]) from R. sphaeroides genomic DNA and cloned into pUC19 to give pKAM500. A KAN cassette isolated from pUC4K (32) was then cloned into the unique StuI site within RsfliG to generate pKAM501. The 2.66-kb fliGKn fragment was then excised from pKAM501, blunt cloned into the suicide vector pSUP202 (28) to give pKAM502, and then transformed into E. coli S17-1 for diparental conjugation with R. sphaeroides wild-type strain WS8N. Chromosomal DNA was prepared from R. sphaeroides exconjugants resistant to nalidixic acid and kanamycin but sensitive to tetracycline and used as template DNA for a PCR screen to identify that allelic exchange of fliG with fliGKn had occurred by double homologous recombination. This was then confirmed by Southern blotting and sequence analyses.
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FIG. 1. Comparison of gene organization surrounding fliG in R. sphaeroides and E. coli. Single capital letters represent the respective fli gene; the scale is in 1-kb increments. It is not known exactly where the R. sphaeroides fleR operon ends, but fliMN forms a two-gene operon (curved arrows represent predicted transcriptional start sites) (9). In E. coli, fliE is separate with its own divergent promoter (24), and the fliF operon contains fliG. The hatched box and arrow represent the cosmid arm and the extending 25-kb genomic sequence of R. sphaeroides cosmid clone 711 (11), respectively. Cosmid clone 711 contains some of the fleR operon, including fliG, but only partially complemented (20% of the population) the disrupted RsfliG strain WS8FliGK.
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Electron microscopy. Visualization of E. coli and R. sphaeroides flagellar filaments was carried out as follows. A total of 20 µl of culture (at an optical density at 600 nm [OD600] of 0.75) was spotted onto a carbon-Formvar-coated grid (Agar Scientific) and left for 20 s (E. coli) or several minutes (R. sphaeroides). The grid was washed with excess sterile water. Flagellar filaments were stained with 20 µl of 0.5% (wt/vol) phosphotungstic acid stain (E. coli) or 1% (wt/vol) phosphotungstic acid (R. sphaeroides) for 15 s. The grids were visualized with a JEOL JEM-100S electron microscope.
Analysis of free-swimming E. coli cells with Hobson BacTracker. A BacTracker (Hobson Tracking Systems, Sheffield, United Kingdom) was used to determine the run speeds and stopping and tumbling characteristics of motile E. coli cultures. A total of 0.5 ml of overnight stationary-phase cultures of E. coli strains was used to inoculate 50 ml of Mu broth supplemented with ampicillin as required; the cultures were incubated with shaking at 200 rpm at 29°C until an OD600 value of 0.750 was reached. This was the OD600 value at which >80% motility of all strains was observed. A 9.6-µl culture was dropped onto a microscope slide (Merck) and covered with a 22- by 22-mm coverslip (Merck), pressed down such that the culture just reached the edges of the coverslip and giving a chamber depth of 20 µm (Jeff Hobson, personal communication). Cultures were observed with a phase-contrast objective (magnification, x20) on a Nikon Labophot 2A microscope and were tracked immediately for 100 tracks. This was repeated at least three times using a fresh slide each time. The experiment was repeated on more than two different occasions for each set of strains. Real-time computer tracking was carried out using the Hobson BacTracker 50-Hz system set to the following image settings: search radius, 2.19 µm; trail, 25; predict, off; calibrate, x125.0; Vid Pal, 50; aspect ratio, 1.46; refresh time, 5 s; thresholds, +38/107; filter weightings, 1:2, 2:1, 3:1, and 4:1; frames, 10; pixels, 1; percent linearity, 38; percent hysteresis, 80; µm/s, 2.2; immotile process, off; brightness, 139; contrast, 101; and video input, 2. Analysis settings were as follows: analysis, tracks; on tracks, 100; minimum track time, 1.0 s; minimum event time, 0.2 s; maximum track time, 10.0 s; and limits, off. Raw tracking data were analyzed as follows. The mean run speed in micrometers per second and the mean stop time in seconds were calculated for each batch of 100 tracks recorded. These means were sorted into intervals across the range of data, with 1,100 tracks analyzed and sorted in this way for each strain. The data were recorded as histograms.
Motility and chemotaxis assays in soft agar plates. For E. coli strains, single colonies were picked from fresh 2% agar plates with sterile toothpicks and stab inoculated into 0.35% (Bacto Agar; Difco) tryptone soft agar plates (3). Plates were incubated for 10 h at 29°C unless otherwise indicated. Defined E. coli motility plates for chemotaxis investigation were made from an M9 salts base, supplemented with 2% glycerol (carbon source) and 2 µg ml1 of each of the following essential amino acids: L-leucine, L-histidine, L-methionine, and L-threonine (7). In addition, single E. coli chemoattractants (including 1 mM aspartic acid and 1 mM serine) were added. The incubation time for E. coli strains on defined motility plates at 29°C was 48 h, unless otherwise stated. The motility of R. sphaeroides strains was routinely analyzed in comparison to wild-type strains by stabbing single fresh colonies into TYS swarm plates as previously described (27).
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Alignment of FliG proteins (Fig. 2) shows that RsFliG (GenBank no. X98691) has similarities, especially at the C terminus, to E. coli, Vibrio alginolyticus (Va), and Thermotoga maritima (Tm) FliG protein sequences, the last being the source of FliG used to determine the structure of the FliG middle and C termini (6, 20). Charged amino acids found to be essential for motor function in E. coli (18) were also conserved in RsFliG. Interestingly, glutamate residue E320 in EcFliG (Fig. 2) was not conserved in RsFliG, where the corresponding residue is a threonine. The secondary mutation, E320K, in EcFliG suppressed a paralyzing mutation, P159I, located in the periplasmic wall-binding region of MotB, restoring motility (10). It was suggested that the initial P159I paralyzing mutation altered the register between FliG and MotAB, but the suppressing FliG E320K mutation changed the conformation of FliG, thus restoring clearance between the stator and rotor (10). Therefore, unidirectional CW rotation in R. sphaeroides flagella may be due to an altered conformation(s) of FliG, changing interactions with MotA and inhibiting CCW rotation. We tested this proposal by investigating the functionality of RsFliG (from a unidirectional motor) in an E. coli (bidirectional flagellar motor) background.
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FIG. 2. Alignment of FliG sequences from V. alginolyticus (Va), R. sphaeroides (Rs), E. coli (Ec), and T. maritima (Tm), the latter being the source used for crystallization of the FliG middle and C termini (6, 20). Black arrows represent positions of the functional E. coli-R. sphaeroides (EcRs) and nonfunctional R. sphaeroides-E. coli (RsEc) chimeric FliG proteins constructed in this study. Grey arrows illustrate junction sites of other functional FliG chimeras constructed elsewhere: E. coli-T. maritima (EcTm) FliG (20), V. alginolyticus-E. coli (Va-Ec) and E. coli-V. alginolyticus (EcVa) (36), and V. cholerae-E. coli (VcEc) and E. coli-V. cholerae (EcVc) (13). Residues of interest within the FliG C terminus are highlighted as follows: stars, residues of functional importance in E. coli (18, 37) but interestingly not in V. alginolyticus (36); diamonds, residues where changes showed weakened FliG-FliM binding in a yeast two-hybrid assay (23); triangle, single residue isolated as a suppressor of mutation P159I in E. coli stator protein MotB (10). Finally, underlined residues are predicted to be important for FliG-FliM interactions (6, 23).
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FIG. 5. Comparison of chemotactic behavior between E. coli wild-type RP437 and recombinant fliG strains in 0.35% Bacto Agar tryptone (A) and M9 minimal base (B) swarm plates, the latter supplemented with 1 mM aspartate and 1 mM serine chemoattractants (v) or no chemoattractants (vi). Plates were incubated at 29°C for 10 h (A) and 48 h (B), respectively; ampicillin was added to tryptone swarm media for plasmid maintenance where necessary.
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Mutagenesis studies of the switch protein FliG from E. coli and Salmonella enterica serovar Typhimurium have shown several residues to be important for flagellar assembly, in addition to rotation and switching (10, 14, 16, 18, 19, 23). As these studies revealed that the export properties of FliG reside in its N-terminal and central domains (16); we designed a chimeric FliG for testing in E. coli, named EcRsFliG, in which the first two thirds of the protein were EcFliG and the C-terminal third (including functionally important charged residues) was from RsFliG. The junction site, located between EcFliG residues 221 to 222 (Fig. 2), was chosen to ensure that sufficient EcFliG sequence was present to function in flagellar export when the EcRsFliG chimera was expressed in trans from pKAM101 in a fliG null background.
Expressing pKAM101 in DFB225 not only restored motility but electron micrographs showed normal flagellation patterns (Fig. 3B) in comparison to DFB225 complemented with wild-type E. coli fliG expressed from plasmid pHT53 (Fig. 3C). We also constructed and tested, by chromosomal gene replacement, a reverse R. sphaeroides-E. coli fliG chimera (the junction site of the chimera is shown in Fig. 2), but this did not support flagellar export or assembly in R. sphaeroides (data not shown). As inserting the more AT-rich EcfliG-C sequence into the GC-rich R. sphaeroides fleR operon may have caused polar expression effects on downstream fli genes, required for flagellar export, we do not consider this further here.
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FIG. 3. Electron micrographs (magnification, x7,000) of nonflagellate DFB225 (A), DFB225 complemented with pHT53 expressing wild-type E. coli fliG (B), and DFB225 complemented with pKAM101 expressing the EcRsFliG chimera (C). Cells were negatively stained with 0.5% phosphotungstic acid.
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FIG. 4. Swimming behavior of the EcRsFliG chimera in comparison to controls. Mean run speed (in micrometers per second) (A) and mean stop time (in seconds) (B) analyses of free-swimming DFB225 expressing the EcRsFliG chimera from pKAM101 (grey bars) alongside control strains RP437 wild-type (black bars) and DFB225(pHT53) (white bars) are shown by using a Hobson BacTracker. Data were sorted into confidence intervals from batches of 100 individual tracks apiece. Each strain was analyzed at least three times from two separately grown cultures.
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E. coli expressing pEcRsFliG is weakly chemotactic in soft agar. As FliG is a component of the flagellar C-ring switch complex required for chemotaxis, we assayed the chemotactic behavior of DFB225(pKAM101) in comparison to parental strains in soft agar plates (3). DFB225 produced point colonies, due to its nonflagellate phenotype, as a result of the deletion of fliG (Fig. 5Ai). Both wild-type RP437 and DFB225(pHT53) showed the typical large, double-ringed chemotactic swarm (Fig. 5Ai and Aii) and a smaller chemotactic ring were observed for DFB225(pKAM101) (Fig. 5Aiii). Expressing pKAM101 in wild-type RP437 did not cause dominance over wild-type fliG, as the swarm size was not greatly reduced in comparison to the RP437(pUC19) control (Fig. 5Aiv). As the double-ringed appearance of chemotactic swarms on tryptone base soft agar is thought to be due to a combination of aerotaxis and aspartate and serine chemotaxis (33), we also tested the chemotactic response of DFB225(pKAM101) to aspartate and serine in a M9 minimal media background and found that it formed small tactic swarms to both of these attractants (Fig. 5B). The reduced swimming speed of DFB225(pKAM101) observed in the Hobson BacTracker analysis (Fig. 4) may account for all or part of the reduced tactic swarm diameters seen. Timing of the onset of motility did not seem to be a factor, as microscopic examination of RP437, DFB225 (pKAM101), and DFB225 (pHT53) all showed onset of motility (the first few motile cells observed in the culture) at the same time and at the same OD600 value of 0.15. At an OD600 value of 0.75, all cultures showed 90% motility. Thus, although liquid cultures cannot totally reflect swimming within a swarm plate, there was no evidence for late onset of motility in the DFB225(pKAM101) strain, which may have accounted for the smaller swarm diameter seen on plates.
However, tactic-switching effects due to an altered FliG sequence(s) in the chimera may be important. FliM is predicted to bind FliG at two sites (6), and CW-CCW switching during chemotaxis in E. coli might be modulated by changes in the conformation of FliG that are dictated by switch protein FliM, in response to signals from the chemosensory pathway. These two predicted sites of FliG-FliM interaction on FliG are the conserved EHPQ motif (E. coli residues 125 to 128) and several hydrophobic residues from E. coli residues 196 to 229 (Fig. 2) (6, 23). In the EcRsFliG chimera sequence, the EHPQ motif was in the EcFliG domain, but some of the residues that constitute the hydrophobic patch resided in the RsFliG domain (Fig. 2). As the FliG-C therefore originated from a different flagellar motor, FliG-FliM interactions may not have been optimal and may have led to the observed reduced swarm diameters. This may reinforce the importance of the correct spatial orientation for optimal, coordinated interactions within the bacterial flagellar motor.
A comparison with other FliG chimeras. Other FliG chimeras have been previously constructed between FliGs of thermophiles and mesophiles or between FliGs of proton-motive and sodium-motive flagella (13, 36). An E. coli-T. maritima FliG chimera containing the first 1 to 240 residues of EcFliG fused to residues 243 to 335 of T. maritima FliG (designated TmFliG) was motile in an E. coli host (20). This junction site is located 19 amino acids downstream of the EcRsFliG chimera construct made in our investigation. Two other studies involved chimeric FliG proteins (Fig. 3) between E. coli and Vibrio sp. (designated EcVibrioFliG) (13, 36). Both the EcVibrioFliG chimeras complemented the EcFliG null strain, DFB225, as did the inverse VibrioEcFliG fusion proteins using the same junction site position. The junction sites of both these E. coli and Vibrio chimeric FliG proteins are located 19 amino acids downstream from the EcRsFliG junction site used our study. Thus, our work extends the region of the heterologous FliG sequence that is known to functionally substitute for EcFliG in DFB225. This is the only example of FliG sequence exchanges being made between uni- and bidirectional motors, and it illustrates a common mechanism for FliG C-terminal function in bacterial flagellar motors with different rotational properties.
We thank David Blair for E. coli strain DFB225 and plasmid pHT53, Sandy Parkinson for RP437, John Taylor for helpful discussions, and Marilyn Whitworth for technical assistance.
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