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Journal of Bacteriology, June 2006, p. 4158-4162, Vol. 188, No. 11
0021-9193/06/$08.00+0 doi:10.1128/JB.00006-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Gene Involved in Transcriptional Activation of the hrp Regulatory Gene hrpG in Xanthomonas oryzae pv. oryzae
Seiji Tsuge,1*,
Takeshi Nakayama,2,5,
Shinsaku Terashima,1,
Hirokazu Ochiai,2
Ayako Furutani,1
Takashi Oku,3
Kazunori Tsuno,4
Yasuyuki Kubo,1 and
Hisatoshi Kaku2
Laboratory of Plant Pathology, Graduate School of Agriculture, Kyoto Prefectural University, Kyoto 606-8522,1
National Institute of Agrobiological Sciences, Tsukuba 305-8602,2
Laboratory of Molecular Plant Pathology, School of Bioresources, Hiroshima Prefectural University, Shobara 727-0023,3
Faculty of Agriculture, Miyazaki University, Miyazaki 889-2155,4
College of Agriculture, Ibaraki University, Ibaraki 300-0393, Japan5
Received 4 January 2006/
Accepted 9 March 2006

ABSTRACT
A novel regulatory gene,
trh, which is involved in
hrp gene
expression, is identified in the plant pathogen
Xanthomonas oryzae pv. oryzae. In the
trh mutant, expression of HrpG, which
is a key regulator for
hrp gene expression, is reduced both
under the in vitro
hrp-inducing condition and in planta.

TEXT
Xanthomonas oryzae pv. oryzae is the causal agent of bacterial
leaf blight of rice (
23). Like other gram-negative phytopathogenic
bacteria in the genera
Erwinia,
Pseudomonas, and
Ralstonia,
Xanthomonas spp. possess clustered hypersensitive response and
pathogenicity (
hrp) genes that play important roles for pathogenicity
on host plants and for triggering a hypersensitive response
on nonhost plants (
1). The most conserved genes in the
hrp cluster,
called
hrc (
hrp conserved) genes (
2), encode core components
of a type III secretion system (TTSS) that delivers virulence
factors from bacteria to host cells (
6,
7,
20).
Expression of hrp genes is highly regulated and is generally suppressed in complex media but induced in planta and in certain nutrient-poor synthetic media (4, 21, 26, 33, 37). Although many hrp-regulatory genes have been isolated and a complicated regulatory system has been revealed in Pseudomonas syringae, Erwinia spp., and Ralstonia solanacearum (1, 3, 4, 5, 6, 12, 31, 32, 37, 38), only two hrp-regulatory genes, hrpG and hrpX, have been identified in xanthomonads so far (18, 34, 35). HrpG is predicted to be a response regulator, belonging to the OmpR family of a two-component regulatory system, although the corresponding kinase gene has not been identified (36). Phosphorylated HrpG is, therefore, predicted to regulate the expression of another hrp-regulatory gene, hrpX, the product of which belongs to the AraC regulator family, followed by transcriptional activation of other hrp genes (including TTSS structural genes) and genes encoding effector proteins secreted via a TTSS (34, 35).
To isolate and identify novel hrp-regulatory genes in X. oryzae pv. oryzae, we first conducted transposon mutagenesis using an EZ::TN transposome-mediated insertion system (Epicentre, Madison, WI) (27) on 74HrcQ::GUS, in which a promoterless ß-glucuronidase (GUS) gene was inserted at +42 (+1 represents A of the initiation codon) in hrcQ (the first gene of the hrpD operon) in the genomic DNA of X. oryzae pv. oryzae strain T7174R (8, 29). Approximately 1,000 kanamycin-resistant clones were incubated in a hrp-inducing medium, XOM2 (26), at 28°C for 15 h, and GUS activity in each clone was measured (14, 26). In one clone, NRH867, GUS activity was significantly reduced compared to that of 74HrcQ::GUS, although the activity was not completely lost (Fig. 1). Growth of NRH867 in nutrient-rich NBY medium (28) and nutrient-poor XOM2 was similar to that of the parental strain 74HrcQ::GUS (data not shown).
Sequence analysis revealed that, in NRH867, the transposon was
inserted at +310 in a putative transcriptional regulator gene
(
trh [transcriptional regulator for
hrp]) (XOO0783 in the genomic
database of
X. oryzae pv. oryzae T7174 [
17]). The coding sequence
of
trh is predicted to be 729 bp long (242 amino acids), and
in motif analysis using ExPASy (
http://www.expasy.org/prosite/),
the product was predicted to be a member of the GntR regulator
family with a helix-turn-helix motif in the N-terminal region
of the protein (+31 to +50) (
11). Transcriptional regulators
of the family include activators, repressors, and molecules
that both activate and repress a wide range of bacterial operons
(
19). The reduced GUS activity in NBH867 was complemented by
introduction of plasmid pHMTrh, which harbors a

900-bp PvuII-SphI
fragment containing a
trh gene inserted into the broad-host-range
vector pHM1 (
13) (Fig.
1). Higher GUS activity was observed
in the transformant NRH867 (pHMTrh) than in 74HrcQ::GUS, which
is probably due to overexpression of
trh from multiple copies
of the gene by introduction of the plasmid.
We cloned a
7.9-kb SacI-NotI fragment containing a trh gene inserted with a kanamycin resistance gene from the genomic DNA of NRH867 in pBluescript II SK(+) (Stratagene, La Jolla, CA) and generated the trh mutant 74Trh::Kan from the wild-type strain T7174R by marker exchange mutagenesis using the plasmid. Then expression of hrcU, hrpXo, and hrpG in 74Trh::Kan was investigated using plasmids harboring each hrp gene fused with a promoterless gus gene. GUS activity in all of the transformants, even in that transformed with the plasmid harboring the hrp-regulatory gene hrpG fused with gus, was reduced, but not completely lost, compared to that in those derived from T7174R after a 15-h incubation in XOM2 (Fig. 2) (data not shown). The expression level of a phosphoglucose isomerase gene (pgi) in 74Trh::Kan, which is independent of a hrp-regulatory system (27) and is used as a control, was similar to that in T7174R.
To investigate the involvement of Trh in transcription of
hrpG,
real-time PCR was conducted with total RNA extracted from bacterial
cells cultured in XOM2 for 15 h using a QuanTitect SYBR green
real-time PCR kit (QIAGEN, Valencia, CA). The time course of
the amplification of the PCR products was measured by the iCycler
iQ real-time PCR System (Bio-Rad, Richmond, VA). As shown in
Table
1, transcription of
hrpG in 74Trh::Kan was reduced compared
to that in T7174R. Accumulation of the
hpa1 transcript, which
is expressed in a
hrp-dependent manner, also decreased in 74Trh::Kan.
On the other hand, accumulation of the DNA gyrase subunit B
(
gyrB) transcript, which is used for a reference, was not reduced
in the mutant in comparison to that in the wild-type strain.
These results indicate that Trh directly or indirectly activates
hrpG transcription, followed by increased expression of other
hrp genes.
Interestingly, expression of
hrpG increased after incubation
in XOM2 (
hrp inducing) even without
trh compared with incubation
in NBY (not
hrp inducing), although expression of
hrpG was higher
in the presence of
trh (Fig.
2). And after incubation in NBY,
hrpG expression was lower but up-regulated by Trh. These results
suggest that at least two factors are involved in transcriptional
activation of
hrpG. One is mediated by Trh, which functions
both under the nutrient-rich non-
hrp-inducing condition (NBY)
and under the nutrient-poor
hrp-inducing condition (XOM2). The
other is mediated by an unknown factor(s), which functions only
under
hrp-inducing conditions. In
R. solanacearum, four genes,
prhA,
prhI,
prhR, and
prhJ, have been identified as regulatory
genes involved in
hrpG expression (
4,
5,
16). The regulatory
cascade in which these genes are involved is reported to function
specifically during plant-bacterium interactions. Although there
have been no reports of genes corresponding to
prh genes in
xanthomonads, a regulator(s) other than Trh controlling
hrpG expression may be present, which specifically functions under
hrp-inducing conditions, including during plant-bacterium interactions.
Expression of trh under different growth conditions was examined by a real-time PCR method using total RNA extracted from T7174R incubated in XOM2 or NBY. Although accumulation of the hpa1 transcript seemed to be much lower after incubation in NBY than in XOM2, the amount of the specifically amplified fragment for trh, as well as that for gyrB, did not significantly differ between the two growth conditions (Table 2), suggesting constitutive expression of the trh gene.
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TABLE 2. Accumulation of trh and hpa1 transcripts under hrp-inducing (XOM2) and non-hrp-inducing (NBY) conditionsa
|
We also investigated the expression and secretion in 74Trh::Kan
of HrpE1 and Hpa1, which have been reported to be major components
of the
hrp pilus and a harpin-like protein, respectively, and
to be secreted to the culture supernatant under the
hrp-inducing
condition (
9,
10,
30). We incubated 74Trh::Kan under the
hrp-inducing
condition, and bacterial proteins in 1 ml culture were separated
into intracellular and extracellular fractions by centrifugation
at 10,000
x g for 5 min. One hundred microliters of supernatant,
with bacteria completely removed by filtration, was used for
an enzyme-linked immunosorbent assay (ELISA). Proteins in bacterial
cells were extracted with 300 µl of B-PER bacterial protein
extraction reagent (Pierce, Rockford, IL), and the concentrations
were measured with a protein assay kit (Bio-Rad) using bovine
serum albumin as a reference. The samples (5 µg) were
added to 150 µl Laemmli buffer (
15) and used for sodium
dodecyl sulfate-polyacrylamide gel electrophoresis and Tricine-sodium
dodecyl sulfate-polyacrylamide gel electrophoresis, followed
by an immunoblot assay to detect Hpa1 and HrpE1, respectively.
Accumulation of these proteins in the extracellular fraction
from the
trh mutant was greatly reduced compared with that from
the wild type, likely because of less expression of their own
genes and of the genes encoding components of the type III secretion
apparatus (Fig.
3). The lower level of secretion of the protein
was restored by introduction of pHMTrh. We also confirmed lower
levels of accumulation of Hpa1 and HrpE1 in the intracellular
fraction of 74Trh::Kan and complementation by introduction of
plasmid pHMTrh (Fig.
3).
Finally, we investigated the involvement of
trh in the expression
of
hrp genes in rice leaves by using strain 74Hpa1::Lux and
the
trh mutant 74Hpa1::Lux/Trh::Kan, in which a fragment containing
a promoterless
lux operon derived from pUCD623 (
22) was inserted
at the EcoRI site located downstream of the
hpa1 promoter. Expression
of the gene is regulated by HrpG and is specifically expressed
under the
hrp-inducing condition (
9). The virulence of
hpa1 mutants is lower, but they are still pathogenic on rice (
9,
39). The strains were diluted in water (optical density at 600
nm [OD
600], 0.3; approximately 1
x 10
8 CFU/ml) and inoculated
by the clipping method (
25) onto flag leaves and the next leaves
of rice (
Oryza sativa L. cv. IR24) grown in a greenhouse at
28 ± 5°C. Expression of
hpa1 was examined by measuring
bioluminescence using a video-intensified microscope camera
and analyzed by ARGUS-100 (Hamamatsu Photonics, Hamamatsu, Japan)
(
24). During infection, accumulation of bioluminescence from
rice leaves inoculated with 74Hpa1::Lux/Trh::Kan was lower than
that from leaves inoculated with 74Hpa1::Lux. At 3 days after
inoculation, the level of bioluminescence from the
trh mutant
strain was ca. five times lower than that from the
trh+ strain
(Table
3). Simultaneously, the bacterial numbers in 1-cm-long
leaf sections including the inoculation site were measured by
plating on the medium. Unexpectedly, there was no significant
difference in the increase in the number of bacteria between
the two strains. Moreover, leaves infected with each strain
showed disease symptoms from 6 days after inoculation, and there
was no significant difference in lesion lengths between the
two strains by 2 weeks after inoculation.
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TABLE 3. Decrease of hpa1 expression in the trh-defective mutant during growth in rice leaves and pathogenicity of the mutants
|
For further comparison of virulence between two strains with
or without
trh, dilution series of a bacterial suspension (1/5,
1/5
2, 1/5
3, 1/5
4, and 1/5
5; original OD
600 of suspension, 0.3)
of T7174R and 74Trh::Kan were prepared and inoculated onto rice
leaves, and lesion lengths were measured 2 weeks after inoculation.
With decreasing bacterial concentrations, the appearance of
disease symptoms was delayed and lesion lengths became shorter
in leaves inoculated with each strain. There were no significant
differences in lesion formation between the two strains (Table
4). These results suggest that expression of
hrp genes (at least
hpa1) in the
trh mutant is decreased (but not completely lost)
not only under the in vitro
hrp-inducing condition but also
during bacterial growth in rice leaves and that even reduced
expression of
hrp genes and reduced secretion of TTSS effectors
due to a mutation in
trh may be sufficient for bacterial growth
in host plants and the development of disease symptoms, although
the possibility that expression of
hrp genes other than
hpa1 does not decrease, unlikely in the case of XOM2, cannot be excluded.
In
R. solanacearum, mutations in
prh genes do not necessarily
result in loss of pathogenicity, suggesting that there are multiple
cascades to induce expression and activation of HrpG (
4,
5,
16). In
X. oryzae pv. oryzae, expression of
hrp genes may be
induced by an unknown cascade(s) to a level sufficient for pathogenicity
on rice even without Trh.
In this work we showed that a putative transcriptional regulatory
gene,
trh, is involved in expression of a
hrp-regulatory gene,
hrpG, in
X. oryzae pv. oryzae, although whether the regulation
is direct or indirect remains unknown. The
trh gene is located
far from both the
hrp gene cluster and
hrp-regulatory genes
hrpG and
hrpXo, although
prh genes are located adjacent to the
hrp gene cluster in
R. solanacearum. Moreover,
trh is located
near the gene cluster for the type II secretion system (XOO0771
to XOO0781), which implies the possibility of involvement of
trh in expression of genes other than
hrp, especially genes
for construction of the type II secretion system. However, we
found no difference between the wild type and the
trh mutant
in the extracellular activity of cellulase, which is secreted
via the type II secretion system, under either
hrp-inducing
or non-
hrp-inducing conditions (data not shown). To clarify
direct or indirect transcriptional activation of
hrpG by Trh
and involvement of Trh in expression of genes other than
hrpG,
further investigation is required.

ACKNOWLEDGMENTS
We thank A. J. Bogdanove for critical reading of the manuscript.
This work was supported by a Grant-in-Aid for Scientific Research [(B) 13460024] from the Ministry of Education, Science, Sports, and Culture of Japan and by the Mishima Kaiun Memorial Foundation.

FOOTNOTES
* Corresponding author. Mailing address: Laboratory of Plant Pathology, Graduate School of Agriculture, Kyoto Prefectural University, Kyoto 606-8522, Japan. Phone: 81-75-703-5614. Fax: 81-75-703-5614. E-mail:
s_tsuge{at}love.kpu.ac.jp.

S.T., T.N., and S.T. contributed equally to this work. 

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Journal of Bacteriology, June 2006, p. 4158-4162, Vol. 188, No. 11
0021-9193/06/$08.00+0 doi:10.1128/JB.00006-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
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