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Journal of Bacteriology, January 2006, p. 794-800, Vol. 188, No. 2
0021-9193/06/$08.00+0 doi:10.1128/JB.188.2.794-800.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Morehouse School of Medicine, Department of Microbiology, Biochemistry and Immunology, 720 Westview Dr., SW, Atlanta, Georgia 30310-1495
Received 20 July 2005/ Accepted 18 October 2005
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The relA gene encoding guanosine pentaphosphate synthase I is the genetic determinant of the stringent response. The RelA-catalyzed increase in cellular guanosine nucleotides pppGpp and ppGpp, hereafter referred to as (p)ppGpp, leads to rapid inhibition of stable RNA biosynthesis, ribosome and protein synthesis and, ultimately, growth arrest (4). The stringent response is elicited when the rate of tRNA aminoacylation does not meet the demands of protein synthesis (i.e., during amino acid starvation) (4). Under this condition, the ribosome-bound RelA protein is activated to convert GTP to pppGpp, which is subsequently converted to ppGpp by pppGpp 5'-phosphohydrolase (4). Consequently, during this process, the intracellular level of (p)ppGpp rises to a concentration 10- to 20-fold higher than the low steady-state basal level typical of cells in rapid exponential growth (4). The spoT gene encodes two activities, a 3'-pyrophosphohydrolase that degrades (p)ppGpp to GDP and a weak (p)ppGpp synthase activity. In Escherichia coli, only relAspoT double mutants entirely lack (p)ppGpp (27).
Recently, a V. cholerae relA mutant was shown to produce significantly reduced levels of CT and TCP, altered levels of OmpU and OmpT porins, reduced motility, and a 1,000-fold reduction in infant mouse colonization (10). The reduced expression of CT and TCP was explained by the diminished transcription of toxR in the relA mutant (10). In the course of studies aimed to elucidate the genetic determinants of HA/protease expression, we constructed another relA mutant from the El Tor biotype strain C7258 (20). The (p)ppGpp biosynthesis in the new relA mutant was severely inhibited, and the mutant exhibited numerous relA phenotypes. However, contrary to a previous report (10), relA mutants from C7258 produced CT, TCP, and HA/protease, formed wild-type biofilms, were motile, and colonized the suckling mouse intestine.
Disruption of V. cholerae relA.
The RelA protein from E. coli and V. cholerae contains two functionally independent domains, an N-terminal activity domain (Fig. 1, shadowed box) and a C-terminal regulatory domain (9) (Fig. 1, open box). Residues G251 and H354 in the highly conserved N-terminal domain are essential for enzyme activity (9). To inactivate the V. cholerae RelA activity domain, an internal 1,077-bp relA fragment was amplified from strain C6709-1 (wild type, El Tor, Peru isolate 1991) using primers 5'-GTTCTAGAGGTGATTAAGCTTGCCG and 5'-GTTGCATGCCCCGCTTCGAGATTT and the Advantage 2 PCR kit (BD Biosciences). The amplified fragment was cloned in pUC19 for sequence confirmation and subsequently transferred to suicide vector pCVD442 (7) as a SphI-XbaI fragment to generate plasmid pCVD
relA. A PstI fragment containing the Kmr gene from plasmid pUC4K (Amersham Biosciences) was subsequently inserted in a unique NsiI site located within the highly conserved enzyme activity domain (between essential residues G251 and H354) to create plasmid pCVD
relAK. Suicide plasmids were constructed in E. coli SY327
pir (18), transferred to E. coli SM10
pir (18), and mobilized by conjugation to V. cholerae C7258 (El Tor, Ogawa, Peru isolate 1991). Exconjugants were selected in LB medium containing ampicillin (100 µg/ml), kanamycin (50 µg/ml), and polymyxin B (100 units/ml). When pCVD
relAK was transferred to V. cholerae C7258, two classes of exconjugants containing duplications of the relA locus were detected. Class I exconjugants contained the sequence 3'-truncated relA-vector DNA-5'-truncated relA with a Kmr insertion (data not shown). Since the 3'-truncated allele is known to encode a protein that retains enzyme activity in E. coli (9), these exconjugants were not considered for further studies. Class II exconjugants contained the sequence 3'-truncated relA with a Kmr insertion in the activity domain-vector DNA-5'-truncated relA (Fig. 1, bottom panel). The organization of relA loci was investigated by Southern hybridization using the digoxigenin (DIG)-labeled 1,077-bp relA fragment and a PstI Kmr probe. Figure 1 shows the result for class II exconjugant AJB19 (top panel) and the deduced organization of its relA loci (bottom panel). Since the two relA copies in strain AJB19 contain either an insertion or a deletion in the enzyme activity domain (Fig. 1, bottom panel), we expected it to be defective in (p)ppGpp biosynthesis. Additionally, we plated AJB19 in LB containing 5% sucrose to select for vector elimination. The resulting strain AJB42 contains a Kmr insertion in the relA activity domain (Fig. 1, lane 6 and bottom panel).
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FIG. 1. Southern hybridization analysis of relA mutants. Top panel, Southern hybridization of NsiI (N) digests of genomic DNA. Lanes 1 and 3, C7258; lanes 2 and 4, AJB19; lane 5, AJB41; lane 6, AJB42. Lanes 1, 2, 5, and 6 were hybridized with a DIG-labeled 1,077-bp relA fragment (probe). Lanes 3 and 4 were hybridized with a DIG-labeled Kmr PstI fragment (filled box). The molecular weight marker lane (MW) was DIG-labeled DNA digested with EcoRI plus HindIII (Roche Biochemicals). Bottom panel, organization of the relA locus in C7258 and relA mutants. Shaded box, DNA encoding N-terminal activity domain; open box, DNA encoding C-terminal regulatory domain; filled box, Kmr insertion; thick line, flanking chromosomal DNA; thin line, vector DNA.
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FIG. 2. Biosynthesis of (p)ppGpp in V. cholerae relaxed mutants. Left panel, the stringent response was induced as described in the text; radiolabeled guanine nucleotides were analyzed by TLC and detected by autoradiography. Lane 1, C7258; lane 2, AJB19; lane 3, CF1648; lane 4, CF1652 (relA251). Right panel, 10 µl of three independent single-colony cultures of C7258 and AJB19 grown in LB medium were spotted in M9 minimal medium, M9 medium supplemented with AT, and M9 medium supplemented with SMGL and incubated 24 h at 37°C.
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FIG. 5. Transcription of ctxA and tcpA and (p)ppGpp synthetic capacity of wild-type V. cholerae and relA isogenic mutants in AKI culture. Top panel, relative abundance of ctxA (filled bar) and tcpA mRNA (open bar) (relative to recA mRNA) in C7258 and AJB42 grown 8 and 16 h in AKI cultures. Bottom panel, TLC detection of RelA activity in C7258 and AJB42 grown 8 h (lanes 1 to 4) and 16 h (lanes 5 to 8) in AKI cultures. Lanes 1 and 5, C7258 plus DL-serine hydroxamate and L-valine; lanes 2 and 6, C7258; lanes 3 and 7, AJB42 plus DL-serine hydroxamate and L-valine; lanes 4 and 8, AJB42.
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FIG. 3. V. cholerae relaxed mutants show reduced growth rates in minimal medium and are thermosensitive. Overnight cultures of strains C7258 and AJB19 in LB broth were washed twice in MOPS-glucose minimal medium (MOPS-G) and diluted 1:100 in MOPS-glucose medium or MOPS-glucose supplemented with 1% vitamin-free Casamino Acids (MOPS-G-CAS). Cultures were incubated at 37°C or 45°C with shaking (250 rpm). , C7258 in MOPS-G; , AJB19 in MOPS-G; , C7258 in MOPS-G-CAS; , AJB19 in MOPS-G-CAS; , C7258 in MOPS-G-CAS at 45°C; , AJB19 in MOPS-G-CAS at 45°C.
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tcpA10) were grown in AKI cultures, and the cell pellet of 0.5 OD600 units was boiled in sodium dodecyl sulfate-polyacrylamide gel electrophoresis loading buffer. Samples were resolved in a 12% sodium dodecyl sulfate-acrylamide gel, transferred to an Immobilon-P polyvinylidene fluoride membrane (Millipore), and TcpA detected using rabbit anti-TcpA serum and peroxidase-conjugated anti-rabbit immunoglobulin G. Figure 4B shows that C7258, AJB19, and AJB42 produced a 21-kDa antigen that reacted with anti-TcpA serum and was absent in the tcpA deletion mutant KHT52 (24).
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FIG. 4. Expression of virulence factors and biofilm formation in relA mutants derived from strain C7258. (A) Production of cholera toxin in supernatants of V. cholerae strains grown in AKI cultures. (B) Detection of TcpA in the wild type and in relA mutants grown in AKI cultures. (C) Motility of the wild type and of relA mutants. Strain AJB32 (C6709-1, motY::Km) was used as the negative control. (D) Production of HA/protease in supernatants of V. cholerae strains grown in tryptic soy broth. The HapR-defective strain N16961 was used as the negative control. (E) Biofilm formation by V. cholerae strains expressed as OD570/OD600. The error bars indicate the standard deviations of the means for three independent cultures.
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For HA/protease production, strains were grown to saturation in Bacto tryptic soy broth (Becton Dickinson and Co.) at 37°C and extracellular protease activity was measured using an azocasein assay (1). In this assay, one azocasein unit is defined as the amount of enzyme producing an increase of 0.01 OD442 units per h. Figure 4D shows that strains AJB19 and AJB42 made slightly elevated amounts of HA/protease compared to C7258, suggesting that (p)ppGpp could have a negative effect. To further investigate this effect, we used the relA isopropyl-ß-D-thiogalactopyranoside (IPTG)-inducible plasmid pALS10 (Ampr, lacIq) (23) to overexpress RelA in C7258. Plasmid pALS14 is a control plasmid encoding an IPTG-inducible inactive RelA protein (23). Induction of RelA in pALS10 increases (p)ppGpp levels by augmenting the fraction of ribosomes bound to RelA that can be transiently activated to make (p)ppGpp when a hungry codon is encountered (23). Contrary to results seen with E. coli, no growth inhibition was observed in C7258 overexpressing RelA (data not shown). Figure 4D shows that the induction of full-length RelA in pALS10, but not the inactive RelA encoded by pALS14, severely diminished production of HA/protease. Total RNA was isolated using an RNeasy kit (QIAGEN, Inc.), and RNA samples were analyzed by real-time reverse transcription (RT)-PCR using an iScript one-step RT-PCR kit with SYBR Green (Bio-Rad Laboratories) as previously described (20). The primer pairs 5'-GCACGGCGTTCAGTTATGCTTGTA and 5'-AGGTAAAACGCGCGGTTAAACACG and 5'-GTGCTGTGGATGTCATCGTTGTTG and 5'-CCACCACTTCTTCGCCTTCTTTGA were used to assess hapA mRNA encoding HA/protease and recA mRNA levels, respectively. Relative expression values (R) were calculated using the equation R = 2(
CT target
CT reference), where CT is the fractional threshold cycle. The relative abundance of hapA mRNA in IPTG-induced and noninduced pALS10-containing C7258 were 2.7 ± 0.7 and 1.6 ± 0.1 (n = 3), respectively, indicating that overexpression of RelA diminishes HA/protease production by a posttranscriptional mechanism.
For analysis of biofilm formation, strains were grown for 24 h at 30°C in 100 µl of LB medium in 96-well flat-bottom polystyrene microtiter plates. Growth was measured by reading the OD600, the cultures were discarded, and each well was washed three times with 200 µl of phosphate-buffered saline. Biofilm formation was detected as described in reference 29 by staining with 0.1% crystal violet. Plates were incubated 30 min at 25°C and washed thoroughly. The biofilm was dissolved with dimethyl sulfoxide, and the optical density was read at 570 nm (OD570). Biofilm formation was expressed as the OD570/OD600 ratio (29). As shown in Fig. 4E, strains C7258, AJB19, and AJB42 did not differ significantly in their capacity to form biofilms. Under identical conditions, strain N16961 (HapR defective) made thicker biofilms (OD570/OD600 = 4.0) than strain C7258.
Finally, two competitive colonization experiments were performed by administering mixtures of AJB19 plus C7258 and AJB42 plus C7258 to groups of five 4-day-old CD-1 suckling mice. After an 18-h incubation period, mice were sacrificed by cervical dislocation; the small intestine was withdrawn, homogenized in 5 ml of phosphate-buffered saline (pH 7.4), and plated on LB and LBK agar. The competitive index was calculated as the output ratio of mutant to wild-type divided by the input ratio. The competitive indices for strain AJB19 and AJB42 were 4.1 ± 2.3 and 2.5 ± 1.4, respectively. This result shows that strains AJB19 and AJB42 colonized the mouse intestine as well as or better than C7258. This result is in agreement with AJB19 and AJB42 being motile (Fig. 4C) and expressing TcpA (Fig. 4B).
To investigate the differences between our relA mutant and the previously constructed SHK17 (10), we transferred plasmid pCVD
relAK from E. coli to C6709-1, the precursor of SHK17, to generate AJB41 (Fig. 1, lane 5). Results of a guanine nucleotide TLC analysis of AJB41 were indistinguishable from results obtained with AJB19 (Fig. 2, lane 2) and AJB42 (Fig. 5, lanes 3 and 7). C6709-1 expressed slightly less CT than C7258, and its mutant AJB41 showed the lowest levels of CT production (Fig. 4A). However, strain AJB41 still produced significantly more CT than that reported for the relA mutant SHK17 (10).
We investigated if transcription of ctxA and tcpA in AKI medium is paralleled by unusually high RelA activity. Strains C7258 and AJB42 were grown in AKI cultures for 8 h and 16 h. At these time points, cells were collected for preparation of total RNA and for determination of their RelA activity. Real-time RT-PCR was conducted as described above, and the relative abundance of ctxA and tcpA mRNA determined using primers pairs 5'-TATGCCAAGAAGACAGAGTGAGTAC-5'-ACCTGCCAATCCATAACCATCTGC and 5'-CACGATAAGAAAACCGGTCAAGAGG-5'-AGCGACAGCAGCGAAAGCACCTT, respectively. In parallel, 1 OD600 unit of cells was centrifuged, washed three times with MOPS-glucose, and resuspended in MOPS-glucose to an OD600 of 0.4, and aliquots (0.1 ml) were transferred to 96-well microtiter plates. These cells were diluted 1:25 in MOPS-glucose containing 100 µCi/ml of carrier-free [32P]H3PO4 with and without DL-serine hydroxamate and L-valine. No incorporation of 32P to (p)ppGpp could be detected without induction of a stringent response by the addition of DL-serine hydroxamate and L-valine (Fig. 5). This experiment demonstrates that at the time V. cholerae cells are expressing ctxA and tcpA, the (p)ppGpp biosynthetic capacity of the cell is at a basal state. Relative expression of ctxA and tcpA was lower for AJB42 than for C7258 at 8 h but diminished to values similar to that for C7258 at 16 h (Fig. 5).
Discussion. V. cholerae relaxed mutants were thermosensitive and showed reduced growth rate in minimal medium that could be alleviated by the addition of Casamino Acids. This observation suggests that relA mutants display reduced amino acid biosynthetic capacity. The temperature sensitivities of some E. coli relA mutants have been associated with decreased thermotolerance (28). These properties of V. cholerae relA mutants could potentially hinder their ability to colonize specific ecological niches in which a required amino acid is in short supply and/or to survive environmental temperature shifts.
Production of CT and TCP in vivo by El Tor biotype V. cholerae has been shown to occur at low cell density, at which expression of HapR is repressed and AphA activates the expression of tcpPH (22, 25, 30). A V. cholerae relA mutant was recently found to be defective for the expression of CT, TCP, motility, and intestinal colonization (10). V. cholerae strains of El Tor biotype produce CT and TCP when cultured in rich peptone-containing medium or in the protein (mucin)-rich environment of the small intestine. These nutrient-rich environments are unlikely to induce a stringent response in a low-cell-density bacterial population. Thus, it is reasonable to assume that CT, pilus, and flagellum are expressed at a growth phase in which intracellular levels of (p)ppGpp are basal. Figure 5 confirmed that transcription of ctxA and tcpA are not associated with an elevated RelA activity. Our results clearly show that while strain AJB19 and AJB42 are defective in stringent response and display numerous relaxed phenotypes (Fig. 2 and 3), they still produce CT, are motile, and make enough TCP to effectively colonize the suckling mouse intestine (Fig. 4A, D, and E). These results demonstrate that availability of a stringent response is not required for expression of major virulence factors and intestinal colonization. We hypothesize that basal levels of (p)ppGpp, rather than availability of a stringent response, can influence virulence gene expression and perhaps other cell functions (e.g., motility). The conflicting phenotypes displayed by relA mutants AJB19, AJB42, and SHK17 (10) could be due to the presence of an unselected mutation affecting the expression of virulence in SHK17. These differences could also arise from the use of different strains differing in residual SpoT (p)ppGpp synthase activities. It is conceivable that in a relA-positive background, the RelA protein could be transiently activated to adjust (p)ppGpp levels without inducing a full-blown stringent response. Consequently, relA mutants might lack the capacity to readjust (p)ppGpp levels in exponentially growing cells facing occasional environmental changes, such as the shift from static to shaken conditions in AKI cultures, or during intraintestinal growth. RelA could be more or less dispensable for exponentially growing cells, depending on culture conditions and strain-to-strain variation in residual SpoT (p)ppGpp synthase activity. We have cloned DNA sequences flanking the V. cholerae spoT gene (VC2710) in suicide vector pCVD442 (7) but have failed in several attempts to construct a (p)ppGpp-null relAspoT double mutant. This result suggests that a V. cholerae (p)ppGpp-null mutant could be lethal or have unusual nutritional demands.
The finding that AJB19 and AJB42 also produced HA/protease and normal biofilms indicates that, under our culture conditions, RelA is not required for the expression of quorum sensing and stationary phase regulators HapR and RpoS, respectively. In fact, no differences in the relative abundance of rpoS and hapR mRNA between cultures of the wild type and relA mutants grown to stationary phase were observed (data not shown). This result does not rule out the possibility that under conditions of stringent response, the accumulation of (p)ppGpp to high levels could modulate the expression of the above or other regulators. Although overexpression of RelA in V. cholerae severely diminished the production of HA/protease, this condition did not affect transcription of hapA, rpoS, and hapR. Further studies are required to understand the mechanism by which overexpression of RelA affects production of HA/protease.
We thank Michael Cashel (National Institute of Child Health and Human Development, Bethesda, Md.) for providing plasmids and reference E. coli strains with wild-type and mutant relA alleles and Ronald K. Taylor (Dartmouth Medical School, Hanover, N.H.) for TCP antiserum.
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prophage. Infect. Immun. 65:1561-1565.[Abstract]
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