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Journal of Bacteriology, October 2006, p. 7132-7140, Vol. 188, No. 20
0021-9193/06/$08.00+0 doi:10.1128/JB.00647-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Department of Cell Biology, Box 3709, Duke University Medical Center, Durham, North Carolina 27710
Received 5 May 2006/ Accepted 1 August 2006
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Several proteins are known to bind directly to FtsZ. FtsA and ZipA both bind the same site: a 15- to 17-amino-acid peptide at the very C terminus of FtsZ (23, 31, 49, 52). In Mycobacterium tuberculosis, which has no FtsA or ZipA, this peptide binds FtsW (9), and this binding may occur in other species. MinC binds FtsZ (26), probably on the bottom protofilament interface of FtsZ. MinC is not essential for the assembly and constriction of Z rings, but in its absence extra Z rings assemble near the cell ends, resulting in mini-cells (10). ZapA, SlmA, and ClpX bind FtsZ, but the sites of binding are not known; these are not essential division proteins, although deletion of some pairs (ZapA and EzrA, or SlmA and MinCDE) results in synthetic lethality (3, 21, 50).
We will consider two extreme models for how the Z ring might generate the force for constriction. The first model is via a motor molecule, similar to the known mechanism of eukaryotic cytokinesis. This model would propose that motor molecules bind FtsZ and pull protofilaments together. Although no candidate motor molecules have been identified in bacteria, there could be an unidentified motor, or one of the downstream proteins might bind FtsZ protofilaments and act as a motor. The second model is the Z-centric hypothesis, which postulates that FtsZ provides not only the cytoskeletal scaffold but also generates the constriction force. We have previously proposed one possible mechanism, which involves the change in protofilament conformation from straight to curved (14, 30). An alternative model, in which FtsZ provides the scaffold and one or more of the downstream proteins generates the constriction force, will be addressed in the Discussion, below.
If FtsZ generated the constriction force entirely through self interactions, one might be able to replace E. coli FtsZ with the FtsZ from widely divergent bacterial species. Of course it would be necessary to give the foreign FtsZ the C-terminal peptide from E. coli FtsZ so it could bind FtsA. On the other hand, if constriction involved a motor binding to FtsZ protofilaments, the binding site for the E. coli motor would likely be lost on divergent FtsZs.
FtsZ is highly divergent across prokaryotic species. The amino acid sequence of E. coli FtsZ (EcFtsZ) is only 46% and 53% identical to those of Mycoplasma pulmonis (MpuFtsZ) and Bacillus subtilis (BsFtsZ). In addition, M. pulmonis is missing all of the downstream proteins identified in E. coli. It is therefore unlikely that MpuFtsZ would retain the ability to bind any E. coli downstream division proteins or a hypothetical motor molecule. We therefore decided to investigate whether FtsZ from M. pulmonis and other bacteria could function for division in E. coli.
Before beginning these studies we made a discovery that was essential for their success. While experimenting with mutants of EcFtsZ that could not complement the ftsZ null in our standard assay (38, 43), we found several FtsZ mutants that could generate suppressor strains in which a second-site genomic mutation permitted the defective FtsZ to function for cell division. This same approach generated suppressor strains in which foreign FtsZ could function for division.
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TABLE 1. Strains and plasmids
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FIG. 1. Schematic illustration of the complementation system and production of suppressor strains. See Results for details.
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To create chimeric molecules with the C-terminal tail (amino acids [aa] 325 to 383) from E. coli and the N-terminal domains from foreign bacteria, a silent SpeI site was introduced at aa 326 in EcFtsZ in pJSB2. C-terminal (Ct)-deleted BsFtsZ (aa 1 to 323), MpuFtsZ (aa 1 to 320), and MpnFtsZ (aa 1 to 336) were amplified by PCR from their pJSB2 plasmids. The sequence went from a BamHI site located in the vector about 30 bp 5' of the start codon and added a SpeI site on the C terminus. The EcFtsZ-SpeI vector was cut with BamHI and SpeI, and the foreign ftsZ was ligated to replace the N-terminal segment of EcFtsZ.
In order to study the suppressor strains with wild-type FtsZ, we removed the pJSB2 plasmid expressing the mutant or foreign FtsZ. We prepared a new pBAD plasmid in which the ampicillin resistance was replaced with spectinomycin resistance. This plasmid is incompatible with pJSB2 (which is a pBAD-based plasmid). We transformed the suppressor strain with pKD3, to provide wild-type FtsZ, and with the new pBAD plasmid and grew the cells at 30°C in glucose, ampicillin, and spectinomycin. Clones that were chloramphenicol sensitive and spectinomycin resistant were identified as suppressor strains that were now using wild-type FtsZ from pKD3. Suppressor strains were later retransformed with pJSB2 expressing the original mutant FtsZ or a new one.
For light microscopy cells were grown in Luria broth (LB)-based medium containing 34 µg/ml chloramphenicol and 0.2% arabinose until the optical density at 600 nm reached
0.8 (except as noted). Cells were visualized with differential interference contrast and fluorescence microscopy using a Zeiss Axiophot with a 100x objective, 1.3 numerical aperture lens. Filter cubes optimized for YFP and green fluorescent protein were used for fluorescence microscopy. Images were acquired with a Coolsnap HQ charge-coupled device camera (Roper Scientific).
To determine the localization of (Bs/EcCt)CtYFP in its suppressor strain, a stationary culture was diluted 200-fold and grown for several hours (this strain grew very slowly). To observe the localization in the original JKD7-1 background, without the suppressor mutation, JKD7-1/pKD3 was transformed with pJSB2 expressing (Bs/EcCt)CtYFP. An overnight culture was diluted 200-fold at 30°C or at 42°C plus 0.2% arabinose. Specimens were made at 3 to 4 h, when the cells were just starting to elongate, and at 10 h, when they were in stationary phase and starting to die.
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We used a modification of this complementation system to produce suppressor strains for FtsZ mutants and for FtsZ from foreign species. Instead of plating 1,000 cells, we plated 106 to 107 cells. A substantial background of colonies appeared at a frequency of 105 to 106. These background colonies were large and generally retained resistance to ampicillin, which suggested that the pKD3 plasmid had lost its temperature sensitivity. Some FtsZ mutants generated additional colonies at frequencies of 104 to 106. These colonies were smaller and were sensitive to ampicillin and dependent on arabinose for growth, indicating that they were depending on the mutant FtsZ expressed from pJSB2. We provisionally identified them as suppressor strains and confirmed this with additional tests described below. The mutants that generated suppressor strains and the frequencies at which they arose are given in Table 2.
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TABLE 2. Point and insertion mutants that produced suppressor strainsa,b
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We will use the abbreviation SUP{D96A} to refer to the suppressor strain generated by ftsZ mutant D96A. In some cases we characterized two separate colonies from the original suppressor generation, and we have designated these by appending a number, e.g., SUP{D212A1} and SUP{D212A2} (Table 2).
We confirmed by immunoblotting the absence of wild-type FtsZ in strain SUP{CtYFP1} (the suppressor strain produced by FtsZ with YFP fused at the C terminus, described below). Wild-type FtsZ was completely absent from the suppressor strain, and FtsZ-CtYFP was expressed at about a 2 to 3 times higher level than the wild-type FtsZ expressed from pKD3 in JKD7-1 (Fig. 2A). This result is in good agreement with other reports that pKD3 supplies FtsZ at the same level as genomic FtsZ (8) and that pJSB2 can express
3 to 5 times higher levels than genomic FtsZ (43, 45).
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FIG. 2. Expression of FtsZ-CtYFP in the suppressor strain. (A) The original strain JKD7-1 and the suppressor strain generated from FtsZ-CtYFP were compared by immunoblotting, as described previously (45). One microgram of total protein from the suppressor strain and 2, 1, and 0.5 µg from JKD7-1 were loaded. The cells were cultured with 0.2% arabinose at 42°C for the suppressor strain and at 30°C for JKD7-1. (B) Fluorescence microscopy localizing FtsZ-CtYFP in the suppressor strain SUP{CtYFP1}, where it is the sole source of FtsZ.
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Two suppressor strains were previously described for the temperature-sensitive allele ftsZ84 (G105S), permitting growth at 42°C. One of these was due to a twofold overexpression of ZipA, and the other was not characterized (42). To see if something similar was occurring in our results, we checked several suppressor strains generated by FtsZ-CtYFP for alterations in FtsA and ZipA. In one strain, SUP{CtYFP1}, the level of FtsA was reduced to about half. Six others strains had normal levels of FtsA. All strains had normal levels of ZipA, and there were no sequence changes in either gene.
Suppressor strains for insertional mutants in EcFtsZ.
We next extended the study to mutant FtsZs that had insertions of either YFP or a shorter 20-amino-acid insert (38). The YFP insertions that generated suppressor strains were either at the very C terminus (FtsZ-CtYFP) (Fig. 2) or within the
50-amino-acid "spacer" between the C-terminal globular domain and the C-terminal peptide that binds FtsA and ZipA (38). Interestingly, one 20-amino-acid insertion at aa 248 also produced a suppressor strain. The functionality of the FtsZ protein with this insertion is surprising, because it is in a highly conserved sequence, SPL248LE.
Testing for cross-suppression.
We then addressed the question of whether a suppressor strain generated by one mutant FtsZ could suppress the defects of other FtsZ mutants or insertions. For example, suppressor strain SUP{D96A} carrying wild-type ftsZ on pKD3 was transformed in succession by pJSB2 carrying each of the other ftsZ mutant alleles. We then plated
1,000 cells and compared colony formation under control (30°C, glucose) and complementation (42°C, 0.2% arabinose) conditions. For pJSB2-Q47K, we observed full complementation in SUP{D96A}, but none of the other FtsZ mutants produced colonies in this strain at 42°C. We will say that SUP{D96A} suppresses Q47K. We also found that SUP{Q47K} suppressed D96K, but neither of these strains suppressed any of the other mutants. SUP{D212G} was of broader potency, as it could suppress D96A and Q47K, as well as one 20-amino-acid insertion. The suppressor strains generated by YFP insertions at the C terminus and at aa 326 could suppress most of the other insertions but none of the point mutants. These suppressor strains seem specialized for insertions in the C-terminal region. Table 2 summarizes the tests of each FtsZ mutant in each suppressor strain.
In some cases, a second round of suppressor strains was generated using a new mutant. For example, the suppressor strain SUP{CtYFP1}, originally produced by FtsZ with YFP fused to its C terminus, was retransformed with pJSB2 carrying the D96A mutation. When tested under complementation conditions (1,000 cells plated), no colonies were obtained. However, when plated at high levels (106 to 107 cells), new suppressor strains developed. These strains presumably retained the original suppressor mutation and had an additional genomic mutation and are designated as SUP{CtYFP1//D96A} (the double slash indicates a double suppressor).
Can FtsZ from foreign bacteria achieve cell division in E. coli? We used the complementation and suppressor assays to test whether FtsZ from divergent bacterial species could function for division in E. coli. FtsZs from Yersinia pestis, Pseudomonas aeruginosa, Azotobacter vinelandii, Bacillus subtilis, Mycoplasma pulmonis, and Mycoplasma pneumoniae are 97%, 67%, 68%, 53%, 46%, and 23% identical, respectively, to E. coli FtsZ (these percent identities have been determined for the conserved core domain, aa 1 to 316 in EcFtsZ). Only YpFtsZ was functional for division in our standard complementation assay. YpFtsZ was not fully functional, since colonies grew slower on the agar plates and cells were somewhat elongated (Fig. 3B).
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FIG. 3. Morphology of strains using foreign FtsZ for division. (A and B) The original JKD7-1 strain complemented with EcFtsZ (A) and YpFtsZ (B). (C to G) Other foreign FtsZs are shown in the suppressor strains they generated. Those strains were cultured with 0.2% arabinose at 37°C. Bar, 10 µm.
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TABLE 3. Foreign FtsZs tested for complementation and production of suppressor strainsa
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FIG. 4. Sequence alignment of the 17-amino-acid C-terminal peptide that binds FtsA and ZipA.
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Finally, we tested FtsZ from M. pneumoniae, which has an extremely divergent sequence. This FtsZ did not produce suppressors even when given the E. coli C-terminal tail. MpnFtsZ has a pI of 7.5, versus pIs of 4.5, 4.9, and 5.1 for EcFtsZ, BsFtsZ, and MpuFtsZ. It is likely that MpnFtsZ is designed to operate in a higher pH environment and may have defective assembly in the E. coli cytoplasm. One other FtsZ, that from Mycobacterium tuberculosis, also failed to produce a suppressor strain, even with the E. coli C-terminal peptide (data not shown).
To determine the localization of (Bs/EcCt)FtsZ and the morphology of Z rings, we constructed (Bs/EcCt)CtYFP, where YFP was fused to the C terminus. We had already characterized the suppressor strain SUP{CtYFP1}, which was originally generated from E. coli FtsZ-CtYFP, and demonstrated that it suppressed Bs/EcCt. We therefore tested (Bs/EcCt)CtYFP in this strain and found that it produced colonies. The frequency of colony formation was only 10% under the complementing conditions. The cells examined by light microscopy were variably elongated and bent, similar to Bs/EcCt in its original suppressor strain (data not shown). Fluorescence microscopy showed a highly variable localization of (Bs/EcCt)CtYFP (Fig. 5A). Many cells had spiral filaments (Fig. 5B), multiple Z rings (Fig. 5C), or straight filaments running longitudinally or with a patchy distribution (Fig. 5A). A frequent structure was a small spot on one side of the cell, which looked like half of a Z ring. Some normal-looking Z rings appeared in short cells, but these were rare (Fig. 5D and E). Immunofluorescence was also used to localize (Bs/EcCt)FtsZ in its original suppressor strain, SUP{Bs/EcCt}. The immunofluorescence was more diffuse than YFP but in general agreement (data not shown).
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FIG. 5. The Z-ring structures of B. subtilis FtsZ (Bs/EcCt)CtYFP visualized in SUP{CtYFP1}, a suppressor strain generated with E. coli FtsZ-YFP. The cells were observed with YFP fluorescence. (A) Field with various types of localization. (B and C) Spiral and multiple Z rings, respectively. (D and E) Sharp Z rings in short cells, which were observed only occasionally. Bars, 10 µm.
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FIG. 6. Distribution of (Bs/EcCt)CtYFP under complementation and dominant-negative conditions. JKD7-1 transformed with pJSB2 expressing (Bs/EcCt)CtYFP was cultured overnight at 30°C without arabinose and then the cells were diluted 200-fold into LB containing 0.2% arabinose. The cells were cultured at 42°C (A and C, complementation) or 30°C (B and D, dominant negative). The fluorescence of (Bs/EcCt)CtYFP was observed at 3, 4, or 10 h after starting the culture, as indicated. Arrowheads show Z-ring-like structures in panel C. Bar, 10 µm.
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We identified two distinct suppressor strains produced by (Mpu/EcCt)FtsZ, designated 11 and 13, and we tested them against all of the mutants in Table 2. Strain 13 was one of the most powerful suppressor strains we have generated, and it appears to be equivalent to the double suppressor strain SUP{CtYFP1//D96A}.
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The C-terminal FtsA/ZipA-binding peptide has been described as the last 17 amino acids in the E. coli sequence (13, 35, 36, 46). However, AvFtsZ and PaFtsZ have substantial variation in the first three amino acids, from KEP to DDL (Fig. 4). It is likely that these three amino acids are not part of the FtsA/ZipA-binding segment, because AvFtsZ and PaFtsZ can generate suppressor strains without changing their peptides.
FtsZ binds directly to MinC (26) and probably to SlmA (3) and ClpX (50), all of which are negative regulators of FtsZ. It also probably binds ZapA, a positive regulator (21). It is likely that divergent FtsZs have lost the ability to bind these E. coli proteins. The observation of mini-cells in all strains containing a divergent FtsZ is consistent with a loss of MinC binding. Although deletion of SlmA alone had no effect on E. coli, deletion of SlmA in a Min minus background was lethal for cells growing in rich medium (3). However, Bernhardt and de Boer did obtain colonies when cells were plated at a 104- to 105- higher density (see Fig. 1F in reference 3). We suggest that these colonies may be generated by second-site mutations equivalent to those in our suppressor strains.
A recent study found that deletion of mreB, -C, or -D was lethal in E. coli (28). Cells lacking any of the three mre genes were round and swollen. The lethality was apparently due to a defect in cell division, because it could be rescued by overexpression of FtsQAZ. Remarkably, the lethality could also be rescued by unknown mutations that occurred at a frequency of 105. These suppressor strains kept the round phenotype but were able to achieve division. We suggest that these mutations may be related to those producing our suppressor strains.
Our second-site mutations arose at frequencies of 103 to 105. This high frequency suggests that they are loss-of-function mutations, perhaps in a multigene pathway. A multigene pathway is also suggested by (i) our observation that a given foreign or mutant FtsZ can generate suppressor strains with different phenotypes and efficiency, (ii) the partial overlap of suppressor strains generated by different mutants, and (iii) the ability to generate double suppressor strains with a wider range of suppression. The pathways may involve negative regulation of FtsZ activity or, alternatively, a mechanical resistance of the cell to constriction that, when relaxed, permits division by a partly defective FtsZ.
Implications for the role of FtsZ in division. How divergent might a protein be and still function in a foreign species? This probably depends on its interactions with other proteins. A soluble enzyme that operated alone could probably be extremely divergent, as it would only need to be able to fold and function in the new ionic environment. However, a cytoskeletal protein generally has multiple protein-binding partners. To operate in a foreign host it would have to preserve the binding to the foreign binding partners. One example of a cytoskeletal protein that is functional in a foreign host is gamma-tubulin. Gamma-tubulins from human and arabidopsis are both functional in fission yeast (24, 25). This means that the binding interfaces for alpha/beta-tubulin and for the gamma-tubulin accessory proteins must have been preserved. These gamma-tubulins share 70% sequence identity.
MpuFtsZ and BsFtsZ share only 46% and 53% sequence identity to EcFtsZ and 49% identity to each other, substantially less than the 70% identity of the gamma-tubulins. It seems unlikely that these divergent FtsZs would have maintained an interface for a hypothetical motor protein in E. coli. Binding of MpuFtsZ to the downstream proteins in E. coli is even more unlikely, since M. pulmonis does not have homologs of any of these proteins. An example of loss of binding from our own study is the FtsA-binding peptide. The 15-amino-acid peptides of BsFtsZ and MpuFtsZ each have several amino acid changes from EcFtsZ, and these were apparently sufficient to block binding of EcFtsA. We would expect similar loss of binding of any other E. coli proteins to these diverse FtsZs. We note, however, that this is still a speculation, not a definitive conclusion.
We have suggested that FtsZ may generate the constriction force through self-interactions, not requiring interaction with downstream cell division proteins. We should consider one alternative possibility, that FtsA or one of the downstream proteins is the motor that generates the constriction force. In this scenario, FtsZ provides the framework for the Z ring and the attachment sites for FtsA and the downstream proteins. From the arguments above we would suggest that this hypothetical downstream motor would not bind directly to FtsZ protofilaments but would operate by itself or with another downstream protein to generate the constriction force. This model would be consistent with our observations and interpretation, but it does have a philosophical objection. FtsZ is found in almost all bacteria and the euryarchaeota, but each of the other cell division proteins identified in E. coli and B. subtilis are missing in various other species (14, 33). Indeed, Mycoplasma and euryarchaeota have FtsZ but no recognizable homolog of any other known cell division protein. If we suggest that one of the downstream proteins in E. coli is the motor, we have to postulate a novel motor in the species that lack it. This is certainly possible, but we prefer to think that the motor activity is associated with the one protein that is universally present, FtsZ.
The ability of the divergent FtsZs to function in E. coli is consistent with a two-part mechanism for the division machine. One part involves self-interactions of FtsZ to assemble protofilaments and the Z ring. MpuFtsZ can apparently assemble protofilaments in the E. coli cytoplasm as well as in its own, which is expected, since protofilament assembly involves only self-interaction of FtsZ subunits. When provided with the FtsA-binding E. coli-binding peptide, it can assemble into a Z ring. Any force generation mechanism that involved only FtsZ self-interactions would presumably also function in E. coli. The second part of the division machine involves the downstream proteins remodeling the cell wall. The downstream proteins can apparently function by interacting with themselves but do not need to interact directly with FtsZ. The link between the two parts is provided by the E. coli C-terminal peptide, which permits FtsA, ZipA, and perhaps FtsW to bind and localize to the Z ring.
This two-part mechanism is consistent with several studies showing that downstream proteins interact with FtsA and each other, but not with FtsZ (6, 11, 27) (a weak interaction indicated between FtsZ and FtsK [11] may use the FtsA-binding peptide or is nonessential). It is also consistent with a recent study demonstrating that the Z ring assembles in two phases: FtsZ and FtsA assemble first into the Z ring, and most of the downstream proteins associate later (1).
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