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Journal of Bacteriology, February 2006, p. 1466-1472, Vol. 188, No. 4
0021-9193/06/$08.00+0 doi:10.1128/JB.188.4.1466-1472.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Graduate School of Biological Science, Nagoya University, Chikusa-ku, Nagoya 464-8602, Japan,1 Department of Biology, University of Utah, Salt Lake City, Utah 841122
Received 15 September 2005/ Accepted 23 November 2005
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FIG. 1. (A) Arrangement of proteins that function in rotation in the flagellar motor of E. coli. (B) Topology of the stator proteins MotA and MotB and functionally important residues of the rotor and stator. The indicated charged residues of MotA and FliG were shown to engage in functionally important interactions in the flagellar motor of E. coli (16, 28, 29). Asp32 of MotB is essential for rotation and has been implicated in proton conduction (30). PBD, peptidoglycan binding domain.
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Proton-utilizing motors can rotate as fast as 300 revolutions per second (rps) (18), while some Na+-driven motors have been clocked at 1,700 rps (19). The H+- and Na+-fueled motors appear to operate by fundamentally similar mechanisms. Orthologs of the rotor proteins FliG, FliM, and FliN occur in Na+-utilizing motors, and the C-terminal domain of FliG is to a large extent interchangeable between species. A FliG chimera with N-terminal domain from Escherichia coli and C-terminal domain from V. alginolyticus can function well in the E. coli motor, and the complementary construct is functional in V. alginolyticus (26). The same is true of the stator components. PomA and an appropriately engineered PomB variant can function in the E. coli motor, where they use sodium ions and support rotation at speeds higher than normal (2). This hybrid Na+-utilizing motor requires neither MotX nor MotY, in contrast to the motor of V. alginolyticus. Its Na+ dependence has been exploited to allow detection of discrete stepping events in the motor (24). MotA and MotB can function in the motors of Vibrio spp., where they use protons and support relatively slow motility (2, 11).
Both the rotor protein FliG and the stator protein MotA contain well-conserved charged residues. Mutational studies in E. coli showed that these residues are important for function (16, 28) and that the charged residues of FliG interact with those of MotA (29) (Fig. 1). The precise function of these electrostatic interactions is not known. They could provide a physical linkage between MotA and FliG to ensure that conformational movements in the stator are effectively transmitted to the rotor, or they might serve to signal the rotor position to the stator so that ion-gating events in the stator are appropriately timed (6, 14). Whatever their roles, the rotor-stator interactions are fairly robust, because mutations that neutralized any one of the charges had little effect on function. Mutations that reversed charge, or that neutralized two charges, were necessary to disrupt swarming ability in E. coli (16, 28, 29).
Mutational studies of charged residues in the motor of V. alginolyticus have given somewhat different results. Although the charged residues that are functionally important in E. coli are conserved in the V. alginolyticus FliG and PomA proteins, most mutations in them had little effect on V. alginolyticus motility in swarming or swimming assays (26, 27). Although certain combinations of mutations did impair motility, the charge alterations needed to impair motility were even greater than in E. coli, and because multiple mutations were necessary to give a strong motility impairment, the functional defects might conceivably have been due to alterations in protein structure rather than loss of functionally important charges per se. Thus, the possibility arose that electrostatic interactions between the rotor and stator do not occur in the V. alginolyticus motor or are relatively unimportant for function. Alternatively, such interactions might occur and make a significant contribution to motor function but be augmented by other features of the V. alginolyticus motor that make the rotor-stator interface more resilient. One might expect the rotor-stator interface to be more robust in the V. alginolyticus motor, because it rotates about five times faster than that of E. coli and the viscous load is borne by a single filament rather than a bundle.
Here, we have undertaken comparative studies of the E. coli and V. alginolyticus proteins that form the rotor-stator interface to understand better the differences noted in previous mutational studies. We engineered flagellar motors that were resident in E. coli cells but contained rotor components, stator components, or both stator and rotor components from V. alginolyticus. In each type of motor, mutations were made in the conserved charged residues and effects were measured in swarming and swimming assays. The results indicate that the V. alginolyticus proteins engage in electrostatic interactions that are similar to those occurring in E. coli. The V. alginolyticus motor must incorporate some additional features that make the rotor-stator interface more resistant to mutation. Some of this robustness appears due to additional charged residues that are present in PomA but not MotA, but most is due to factors besides the MotA (PomA) and FliG proteins themselves. The motor in E. coli remained relatively sensitive to mutation of the charged residues even when it used both rotor and stator elements from V. alginolyticus, implying that other factors, possibly including the MotX and MotY proteins unique to the sodium-driven motor, must contribute to the resiliency of the rotor-stator interface in the V. alginolyticus motor.
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TABLE 1. Strains and plasmids
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Motility assays. Assays of swarming in soft agar used TB (1% tryptone, 0.5% NaCl) and 0.27% Bacto agar. When needed, chloramphenicol was used at 12.5 µg/ml and ampicillin at 50 µg/ml. When cells contained pYS3 or pTY402 (or mutant variants), 1 mM arabinose was included to induce expression of the chimeric fliG gene. Single colonies of fresh transformants were picked onto swarm plates, plates were incubated at 32°C, and swarm diameters were measured at regular intervals. Swarm rates were calculated from linear fits to the data and are reported relative to wild-type controls included in the experiments.
To assay motility in liquid medium, a single colony of a fresh transformant was inoculated into TB plus appropriate antibiotics and cultured overnight with shaking at 32°C. Overnight cultures were diluted 100-fold into fresh TB and incubated for 4.5 h at 32°C. Motility was scored visually under a phase-contrast microscope.
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TABLE 2. Effects of charged-residue mutations in a motor using the E. coli stator and the chimeric rotor protein FliGEV
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Next, we examined the effects of mutations in charged residues of MotA in the motors using FliGEV. In the native E. coli motor, rotation is prevented by mutations that neutralize both Arg90 and Glu98 of MotA or that reverse the charge of either (28). (The conserved charged residue Glu150 was shown to make a secondary contribution to rotation in E. coli and is important for rotation in Sinorhizobium meliloti [3], but Glu150 mutations were not tested here.) Arg90 and Glu98 also proved essential for rotation in the motor using FliGEV. Swarming and swimming were eliminated by mutations that neutralized both Arg90 and Glu98 or that reversed the charge of either residue (Table 2). The single charge-neutralizing mutations had stronger effects in the motor using FliGEV than in the native E. coli motor; swarming was prevented by the E98Q mutation and decreased to less than half the wild-type rate by the R90A mutation. Thus, the stator residues important for rotation in the native E. coli motor are also important in the motor using FliGEV.
Synergism and suppression in the motor using FliGEV. Evidence for electrostatic interactions in the E. coli motor came from instances of synergism and suppression in MotA/FliG double mutants (29). To test for synergism and suppression in the motor using FliGEV, we expressed various combinations of charged-residue mutations in MotA and FliGEV in the motAfliG double mutant strain and measured the effects on swarming and swimming.
In several cases, mutations in MotA and FliGEV were tolerated singly but not when paired. The R90A mutation in MotA acted synergistically with mutations in four charged residues of FliGEV (Table 2). Each of the residues showing synergism in the present experiments showed similar behavior in the previous study of the E. coli motor (29). Synergism involving Glu98 of MotA was also reported for the native E. coli motor (29) but could not be observed in the present case because the E98Q mutation alone was sufficient to prevent swarming of the cells using FliGEV.
Instances of mutational suppression were also observed. The charge-reversing mutation D309K in FliGEV prevented motility when the stator was the wild type, but some swarming and swimming were restored when the R90A or R90E mutation was present in MotA (Table 2 and Fig. 2). The suppression seen here in the motor using FliGEV was not as strong as that reported previously in E. coli but was similar in involving the same pair of charged residues (28).
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FIG. 2. Mutual suppression of charge-reversing mutations in the rotor and stator in the motor that uses the chimeric rotor protein FliGEV. E. coli strain DFB245 (fliG motA) was transformed with one plasmid that expresses MotA and a second plasmid that expresses the chimeric FliG protein FliGEV, each with the mutations indicated. The residue numbers given for FliGEV correspond to numbers in the V. alginolyticus FliG protein. Actual residue positions within the chimeric protein sequence are less, by 20. Fresh transformants were picked onto a plate containing TB and 0.28% agar. The plate was incubated at 32°C for 24 h.
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TABLE 3. Effects of charged-residue mutations in a motor using stator components from V. alginolyticus and the rotor of E. coli
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Next, we examined the effects of mutations in FliG in the motor using the V. alginolyticus stator. Mutations in the charged residues of primary importance (Arg281, Asp288, and Asp289 [16]) caused severe defects in the motors using PomA. Swarming was prevented by mutations that neutralized any two of these residues or that reversed the charge of Arg281 or Asp289 (Table 3). Swimming in liquid was either eliminated or greatly weakened. Thus, the same charged residues in FliG are essential for rotation whether the stator is from E. coli or V. alginolyticus.
E. coli motor that uses both stator and rotor components from V. alginolyticus. The E. coli motor using either rotor or stator elements from V. alginolyticus remained relatively sensitive to mutation of the charged residues. To determine whether the V. alginolyticus stator and rotor components together can confer greater resistance to mutation, we examined a motor that uses both stator and rotor components from V. alginolyticus. PomA, PotB, and FliGEV were expressed in the E. coli motAfliG strain, and the effects of various single or double mutations were studied in swarming and swimming assays as before. Results are summarized in Tables 4 and 5.
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TABLE 4. Effects of charged-residue mutations in a motor using both stator and rotor elements from V. alginolyticusa
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TABLE 5. Effects of double charge-neutralization mutations in PomA in the motor using both rotor and stator components from V. alginolyticusa
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FIG. 3. Synergistic action of two charge-neutralizing mutations in the stator (A) or a charge-neutralizing mutation in the stator and another in the rotor (B) in the motor that uses both stator and rotor elements from V. alginolyticus. E. coli strain DFB245 (fliGmotA) was transformed with a plasmid that expresses PomA and PotB and a second plasmid that expresses FliGEV, each with the mutations indicated. The residue number for FliGEV is the position in the V. alginolyticus FliG protein. Transformants were cultured in liquid medium overnight, and aliquots were spotted onto a plate containing TB and 0.27% agar. Plates were incubated at 30°C for 10 h (most strains) or 10.8 h (the E96Q/D309A mutant). w.t., wild type.
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FIG. 4. Suppression of a charge-reversing mutation in the stator by a charge-reversing mutation in the rotor in the motor that uses both stator and rotor elements from V. alginolyticus. PomA, with the mutation R88E, and PotB were expressed from one plasmid, and FliGEV with the mutation D309K was expressed from a second plasmid. Procedures were as described in the legend to Fig. 2, except that the plates were incubated for 28 h.
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TABLE 6. Effects of mutations in other charged residues of PomAa
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The previous mutational studies of PomA (27) and FliG (26) gave some indication that charged residues contribute to function of the V. alginolyticus motor, albeit to different extents than in the E. coli motor. The charge-reversing mutation R317D in V. alginolyticus FliG impairs motility strongly (more so than the corresponding mutation in E. coli) (26). Double mutations in PomA that neutralize one charge and reverse another charge cause a strong motility impairment (27); i.e., a change of 3 charge units in the V. alginolyticus stator had effects roughly equivalent to a 2-unit change in E. coli. Thus, we may suggest that electrostatic interactions between the rotor and stator contribute to motor rotation in both species and that the V. alginolyticus motor incorporates additional features that strengthen the rotor-stator interaction and make it more resistant to mutation.
The robustness of the rotor-stator interaction in V. alginolyticus appears due in part to the presence of additional charged residues in PomA. These include residue Lys89, which is near the previously identified residues of importance, residues Asp114 and Arg135 in other segments of the first cytoplasmic domain, and residues Lys203, Arg215, Asp220, and Arg232 in the second cytoplasmic domain. We do not know whether all of these charged residues of PomA contribute to a single functionally important site on the protein, nor have we determined whether they interact with charged residues of FliG. Additional charged residues cannot be responsible for all of the robustness of the V. alginolyticus motor, however, because an E. coli motor using both rotor and stator components from V. alginolyticus remained sensitive to mutation. We have not yet identified all of the factors contributing to the robustness of the V. alginolyticus motor; among the possibilities are the proteins MotX and MotY, which are essential for rotation of the V. alginolyticus motor and might modulate the rotor-stator interaction so that it is more resistant to mutation.
A recent analysis of charged residues in the S. meliloti motor casts additional light on the variation that can occur at the rotor-stator interface (3). Unlike E. coli, which steers by means of reversals in motor direction, S. meliloti directs its movements by modulating the speed of exclusively clockwise-rotating motors, a behavior termed chemokinesis (23). The charged residues in MotA and most of those in FliG are conserved in S. meliloti, and detailed mutational analysis confirms that they are engaged in functionally important electrostatic interactions at the rotor-stator interface (3). The topology of the interactions and the relative importance of the various residues were found to be somewhat different from either E. coli or V. alginolyticus. Most notably, the pattern of mutational defects in S. meliloti suggested that controlled modulation of the rotor-stator interface might be the basis of chemokinesis (3). Thus, it appears that the rotor-stator interface can vary not only between species but also with circumstances.
A stronger rotor-stator interaction in the V. alginolyticus motor may be an adaptation to the greater operational demands on the Na+-driven polar flagellum. Owing to its much (ca. fivefold) greater rotation speed, the polar flagellum of V. alginolyticus is likely to operate against a greater viscous load than that of E. coli. Closer tolerances at the interface, and/or a larger number of participating groups, might be necessary to maintain efficient coupling between the rotor and stator in the face of this greater load.
In summary, electrostatic interactions between rotor and stator appear to be a general and functionally important feature of bacterial flagellar motors. The particular residues involved and the detailed relationship of the rotor and stator may vary, but the protein domains present at the interface and the electrostatic nature of the interaction seem to be conserved. The precise role(s) of the electrostatic interactions remains to be determined. Further comparative studies of the motors of different species should be helpful for addressing this question.
We thank Yoshiyuki Sowa for technical assistance and discussions.
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