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Journal of Bacteriology, February 2006, p. 1615-1619, Vol. 188, No. 4
0021-9193/06/$08.00+0 doi:10.1128/JB.188.4.1615-1619.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Marie Dozot,1
Jacques Dornand,2
Jean-Jacques Letesson,1 and
Xavier De Bolle1*
Unité de Recherche en Biologie Moléculaire (URBM), University of Namur, Belgium,1 INSERM U431, University of Montpellier II, France2
Received 11 August 2005/ Accepted 14 November 2005
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Since the replicative compartment of Brucella suis is characterized by low oxygen tension, it was postulated that, during the infectious process, Brucella could use denitrification to survive using nitrogen oxides as terminal electron acceptors (6). Another potential role of this system is limiting the production of reactive nitrogen intermediates by the host during infection. Indeed, Brucella abortus was shown to counteract the effect of NO after 24 h of infection in activated macrophages (14).
When analyzing the B. melitensis genome, we observed that three predicted coding sequences for Crp/Fnr regulators (narR, nnrA, and nnrB) are located near the genes putatively involved in denitrification (Fig. 1). NarR belongs to the NarR subfamily of the Dnr cluster, while NnrA and NnrB belong to the NnrR cluster, according to the Korner classification (7). Three other Crp/Fnr genes are predicted from the genomic sequence (5); two of them belong to the A cluster while the last belongs to the FnrN family (7). The B. melitensis genome contains the narKGHJI, nirKV, norEFCBQD, and nosRZDFYSLX gene clusters that are coding for a respiratory membrane-bound nitrate reductase (Nar, with the nitrite extrusion protein NarK), a copper nitrite reductase (Nir), a NO reductase (Nor), and a nitrous oxide reductase (Nos), respectively. The narR gene is found next to genes encoding the nitrate reductase, nnrA is next to genes encoding the nitrite and NO reductases, and nnrB is located downstream of genes encoding the nitrous oxide reductase. Furthermore, the regulators encoded by narR, nnrA, and nnrB genes are homologous to regulators involved in denitrification in other bacteria. Indeed, NarR from B. melitensis is homologous to the Paracoccus pantotrophus NarR, a regulator of the nitrate reductase genes (16). NnrB and NnrA belong to the NnrR family, comprising the NnrR regulator from Rhodobacter sphaeroides 2.4.3, which controls the expression of the nitrite and NO reductases (12).
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FIG. 1. Organization of the denitrifying reductase gene clusters in the B. melitensis 16M genome. The data presented here support a model (depicted as discontinuous lines) in which nnrA is a regulator of nir, nor, and nos genes, while narR is required for full nar expression. Each predicted coding sequence is indicated by an arrow. The arrows in contact and in the same orientation are expected to be coding sequences organized in operons. The genes coding for the catalytic subunit of the reductases are colored in black, and regulator genes are hatched. The three regions are located on the same portion of the small chromosome of B. melitensis 16M, as indicated by the short distances separating the nar, nos, nir, and nor loci. The overlap of narK and narG coding sequences is 86 bp long. The narR coding sequence (BMEII0947) is found close to genes encoding nitrate reductase homologs (nar genes and narK, encoding a putative nitrite extrusion protein), nnrA (BMEII0986) is next to genes encoding the nitrite and nitric oxide reductase homologs (nir and nor genes, respectively), and nnrB (BMEII0966) is downstream of nos genes, encoding the nitrous oxide reductase homolog. At the bottom, a summary of the denitrification pathway is shown. *, region located between narI and nnrB; **, region located between nosR and nnrA.
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An evaluation of nitrite concentration in anaerobic conditions and in the presence of nitrate (15) showed that strains with nnrA and nirK mutants accumulate more nitrite than the wild-type (wt) strain, while narR and narG mutants accumulate a lower concentration of nitrite and no detectable nitrite, respectively (data not shown). These mutant phenotypes are complemented by the presence of an nnrA, nirK, narR, or narG coding sequence on a pBBRMCS4GW plasmid (data not shown). One interpretation for the nitrite accumulation data is that narR could activate the nar operon, probably through the promoter located upstream of narK, encoding a nitrite extrusion protein, and that nnrA could activate nirK. We therefore tested the activity of PnarK in the narR mutant and the activity of PnirK in the nnrA mutant by using the lacZ fusions described in the previous paragraph. Overnight cultures were diluted to an optical density at 600 nm of 0.1 in 2YT medium supplemented with 10 mM NaNO3 and incubated for 3 days in microaerobic conditions (using the CampyGen system, Oxoid) which allow a slow growth of B. melitensis 16M. We observed that the transcription from the PnarK promoter is lower in the narR mutant than in the wild-type strain (Table 1). A stronger effect was reported for NarR in the narK gene in Paracoccus (16), although the target promoter is also not completely switched off in the narR mutant of Paracoccus. In the nnrA mutant, the transcription from the PnirK promoter is much lower than that from the wild-type control (Table 1). We also tested the effect of nnrA and nnrB mutations on norC and nosR promoters that may control the expression of the norB and nosZ coding sequences. We observed that in the nnrA mutant, the transcription from both promoters is strongly reduced, while nnrB mutation does not affect PnorC or PnosR (Table 1).
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TABLE 1. ß-Galactosidase activities from the reductase promoter-lacZ fusions in wt or mutant B. melitensis strains
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FIG. 2. Heterologous transcriptional interference test using nnrA of B. melitensis with the narK, nirK, norC, and nosR promoters. E. coli strains contain a pMR10 plasmid bearing nnrA (or a pMR10 without nnrA) and a pBBR-MCS1lacZ derivative, in which a promoter is fused to the lacZ reporter. It is expected that nnrA expression from pMR10-nnrA will interfere with a promoter-lacZ fusion if NnrA is able to modulate the promoter tested, probably by direct binding. In the upper panel, E. coli strains were grown overnight (in aerobic conditions, without the addition of nitrate) on LB medium containing X-Gal (5-bromo-4-chloro-3-indolyl-ß-D-galactopyranoside) (40 µg/ml), chloramphenicol (20 µg/ml), and kanamycin (50 µg/ml) in order to select for strains harboring a pMR10-derived plasmid and pBBRMCS carrying a fusion to the lacZ reporter. In these experiments, nnrA is expressed under the control of an E. coli lac promoter. The strains having the pMR10-nnrA plasmid and the PnirK-lacZ, PnorC-lacZ, and PnosR-lacZ fusions are less stained than the controls (pMR10-containing strains and the strain containing pMR10-nnrA and the PnarK-lacZ fusion). Three independent clones are shown. These interferences of nnrA with nirK, norC, and nosR promoters that were observed with X-Gal staining are confirmed by a standard ß-galactosidase (ß-gal) assay (lower panel) made with clones grown overnight in liquid LB medium supplemented with chloramphenicol (20 µg/ml) and kanamycin (50 µg/ml) (8). The indicated values are the averages of measurements of three independent clones, and each error bar corresponds to one standard deviation.
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TABLE 2. Virulence of the mutants in BALB/c mice after intraperitoneal infectiona
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) (10 U/ml of mrIFN-
; Pharmingen, San Diego, CA) before being infected with the norB mutant as well as with the nnrA mutant (Fig. 3). The narG mutant was used as a negative control in this experiment. Unstimulated macrophages did not release any detectable NO (4) (data not shown), and in those conditions, the mutants appeared to be as virulent as was the wild type (Fig. 3). In IFN-
-activated cells, which release the nitrogen radical upon infection (4), the growth of the narG mutant was not affected. On the contrary, we observed a clear difference between the wild type and the norB or nnrA mutants at 48 h of infection. Indeed, the number of wild-type bacteria strongly increased between 7 and 48 h of infection for the wild-type strain, while the multiplication of the norB and nnrA mutants was clearly affected (about 10-fold reductions at 48 h relative to unactivated macrophage condition). Measurements at 48 h postinfection (p.i.) revealed a concentration of nitrite (expected to result from NO oxidation) ranging around 15 ± 5 µM in supernatants of cells infected with the different Brucella strains (mutants or wild type), while nitrite was undetectable from the supernatants of cells infected in the absence of IFN-
(data not shown). In order to check whether NO production was indeed involved in the lower resistance of norB and nnrA mutants in activated macrophages, we performed the same infections but in the presence of 2 mM L-NAME (N
-nitro-L-arginine-methyl-ester), an inhibitor of NO synthase. In the presence of L-NAME, the survival of norB and nnrA mutants at 48 h p.i. was almost restored, confirming that the reduction of CFU of norB and nnrA mutants in activated macrophages is NO-dependent (Table 3). The norB and nnrA mutants are therefore sensitive to NO and its derivatives, which was not observed with the wild-type strain and with the narG mutant. Sensitivity of nnrA and norB mutants to NO and its derivatives was confirmed using sin-1, a generator of NO and peroxynitrite (data not shown). These results are in accordance with an nnrA role as activator of norB.
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FIG. 3. Growth of wt and norB (A), narG (B), and nnrA (C) mutants of B. melitensis in J774A.1 macrophages with or without IFN- stimulation. Cells treated or not treated with IFN- (10 U/ml) were infected under the conditions indicated in Materials and Methods. At the indicated time p.i., the number of intracellular bacteria was measured and expressed in CFU/well. Measurements performed (six replicates) ± standard deviations are presented. At 48 h p.i., the difference between activated and inactivated samples is statistically significant (P < 0.001 in a standard t test) for the norB and nnrA mutants (panels A and C).
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TABLE 3. L-NAME, an inhibitor of NO synthase, is able to suppress the survival defect of norB and nnrA mutants in activated macrophagesa
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In conclusion, our data demonstrate that NnrA-regulated genes, probably different from denitrification genes, are of importance for Brucella virulence. Further experiments will be required to identify new NnrA target genes, since more than 80 putative NnrA binding sites were found in a sequence analysis of the B. melitensis genome using the DNA pattern search at the RSA Tools website (http://rsat.ulb.ac.be/rsat/) (13), using default parameters and the NnrR predicted binding site [TTGCG(1)4CACAA] with the possibility of one substitution. It will also be interesting to discover the signal(s) perceived by or transmitted to NnrA; NO could be one of the obvious candidates.
We thank the "Fonds de la Recherche Fondamentale Collective" (FRFC, convention no. 2.4521.04). We thank URPhyM (University of Namur) for DNA sequencing facilities. We also thank Régis Hallez and Sandrine Léonard for the construction of the pBBRMCS4GW and pBBRMCS1lacZ plasmids, respectively.
Present address: Center for Neurovirology and Cancer Biology, Temple University, Philadelphia, PA 19122. ![]()
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