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Journal of Bacteriology, February 2006, p. 1628-1632, Vol. 188, No. 4
0021-9193/06/$08.00+0 doi:10.1128/JB.188.4.1628-1632.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
A Eukaryotic-Type Serine/Threonine Protein Kinase Is Required for Biofilm Formation, Genetic Competence, and Acid Resistance in Streptococcus mutans
Haitham Hussain,1
Pavel Branny,2 and
Elaine Allan1*
Division of Microbial Diseases, UCL Eastman Dental Institute, University College London, London, United Kingdom,1
Cell and Molecular Microbiology Division, Institute of Microbiology, Czech Academy of Sciences, Prague, Czech Republic2
Received 30 September 2005/
Accepted 22 November 2005

ABSTRACT
We report an operon encoding a eukaryotic-type serine/threonine
protein kinase (STPK) and its cognate phosphatase (STPP) in
Streptococcus mutans. Mutation of the gene encoding the STPK
produced defects in biofilm formation, genetic competence, and
acid resistance, determinants important in caries pathogenesis.

TEXT
Streptococcus mutans is the principal etiological agent of human
dental caries (
7). Virulence properties include its ability
to grow in the mixed-species biofilm known as dental plaque
on tooth surfaces (
14,
33) and its ability to tolerate low pH
(
29). Genetic competence is also thought to be important for
survival in the oral cavity, as it promotes genome plasticity
and therefore adaptation to changing environments.
Several genes with regulatory roles in biofilm formation, acid tolerance, and genetic competence are known, including the HK11/RR11 and VicRK two-component regulatory systems (17, 30), the histidine kinase CiaH (27), the response regulator TarC (11), trigger factor RopA (32), and the ComCDE quorum-sensing system (5, 15, 16, 18).
Protein phosphorylation is an important mechanism used to translate extracellular signals into cellular responses and is carried out by coupled protein kinases and phosphatases. Although serine/threonine protein kinases (STPK) and their associated phosphatases (STPP) have been known for some time to play major regulatory roles in eukaryotes, their discovery in prokaryotes is relatively recent (13, 22, 31). Eukaryotic-type STPK and STPP have been identified in several bacteria, and some possess multiple kinases and/or phosphatases (3, 12, 25). In gram-positive bacteria, STPK and/or STPP has been found in Bacillus subtilis (20), Listeria monocytogenes (2), Streptococcus pneumoniae (6, 24), Streptococcus agalactiae (28), and Streptococcus pyogenes (4). The S. pneumoniae and S. agalactiae STPK are required for virulence in animal models, and the S. pneumoniae enzyme is required for genetic competence (6, 28).
Identification of STPK- and STPP-encoding genes.
Analysis of the genome sequence (1) identified pknB (NC_004350; GeneID 1029535), encoding a homologue of the eukaryotic-like STPK family. The highest similarity is with STPK of S. pyogenes (NCBI accession no. AAM79976; 63% identity), S. agalactiae (AAM99225; 59% identity), and S. pneumoniae (AAM47530; 51% identity) and is most pronounced in the N-terminal region containing the consensus Hanks' subdomains that comprise the catalytic domain (8, 9). Downstream of the kinase domain is a hydrophobic region that may be a transmembrane domain. Topology analysis (http://www.ch.embnet.org/software/TMPRED_form.html) predicts that PknB is an N-in, C-out membrane protein with the catalytic domain in the cytoplasm and the C-terminal, presumably sensory, domain located extracellularly. The SMART software (http://smart.embl-heidelberg.de/) predicts three tandem PASTA (penicillin-binding protein- and serine/threonine kinase-associated) domains (34) in the C terminus. The PASTA domain is thought to bind ß-lactam antibiotics and their peptidoglycan analogues, suggesting that PknB may sense unlinked peptidoglycan (34).
pknB is located downstream of, and overlaps with, pppL (GeneID 1027981), a gene predicted to encode an STPP of the 2C subfamily (Prosite entry PDOC00792) that is most closely related to the S. pyogenes enzyme (AAM79977; 73% identity). The presence of a consensus promoter sequence (Fig. 1) within the gene preceding pppL and a transcriptional terminator following pknB suggested that pknB and pppL are cotranscribed, and this was confirmed by reverse transcription-PCR (data not shown). The proximity of the hk11/rr11 gene pair encoding a two-component regulatory system involved in biofilm formation and acid resistance (17) is interesting, as STPK genes are sometimes adjacent to genes encoding their substrates (21, 23).
Construction and complementation of a pknB mutant.
pknB and flanking DNA were PCR amplified from strain UA159 and
cloned into pGEM-T-Easy (Table
1). A 1.7-kb fragment of
pknB was deleted, and a unique SmaI site was introduced by inverse
PCR (Table
1) and used to clone a kanamycin resistance gene
(
aphA3), producing pEA72. The insert was released from pEA72
and transformed into UA159 as a linear fragment. Allelic replacement
was confirmed by PCR using primers flanking
pknB (data not shown).
pVA838 (
19) was used to make two constructs for complementation:
pEA78, containing
pknB regulated by the erythromycin resistance
gene promoter (P
erm) from pVA838, and pEA74, identical to pEA78
except that it lacked a ribosome binding site for
pknB. Transformation
(
10) of the
pknB mutant (PKNB) with pEA74 and pEA78 yielded
a single Erm
r colony in each case.
The pknB mutant has a reduced early growth rate.
Comparison of the growth of strains PKNB and UA159 in brain heart infusion (BHI) broth showed that PKNB had a reduced growth rate early in the growth cycle, but by exponential phase the growth rate of PKNB was not significantly different from that of UA159 (data not shown). As the mutant had a tendency to clump, cultures were vortexed before removal of samples for optical density (OD) measurement. After overnight culture in tryptone soy broth containing 0.5% (wt/vol) yeast extract, UA159 grew as a uniformly turbid suspension, whereas PKNB accumulated at the bottom of the culture vessel (data not shown). Interestingly, aggregation of PKNB was less apparent in BHI broth (data not shown). Both defects were partially restored by complementation in strain PKNBC1, whereas PKNBC2 exhibited similar growth kinetics and a propensity to aggregate in the same way as PKNB.
The pknB mutant has a transformation defect.
pVA838 (19) or genomic DNA from a spontaneous streptomycin-resistant (Strr) strain of UA159, each at 1 µg/ml, was used to measure transformation (10) (Table 2). To eliminate the possibility that the transformation defect was a result of the reduced growth rate of PKNB, assays were carried out that ensured that PKNB and UA159 had reached the same density (OD at 600 nm [OD600], 0.2) before DNA addition. These assays gave results similar to those in Table 2 (not shown). Addition of synthetic competence-stimulating peptide (500 ng/ml; Sigma-Genosys Ltd.) (18) did not improve the transformation efficiency of PKNB, whereas UA159 showed a 10-fold increase (data not shown). Reintroduction of pknB on a plasmid in PKNBC1 resulted in a transformation frequency 100-fold greater than that of the parent (Table 2), presumably as a result of the increased gene dosage. PKNBC2 gave similar levels of transformation as PKNB.
Mutation of pknB results in defects in biofilm formation.
Biofilms were grown on hydroxyapatite disks in 24-well culture
clusters (Corning Inc., from Fisher Scientific, Loughborough,
United Kingdom). Two milliliters of undiluted and diluted (1:50)
exponential-phase culture (OD
600,

0.5) in BHI broth was added
to the wells containing the hydroxyapatite disks. After incubation
for 48 h the disks were rinsed, treated with
BacLight LIVE/DEAD
stain (Molecular Probes), and visualized by confocal laser scanning
microscopy (
35). Marked differences in biofilm depth and coverage
were apparent between the mutant and parent biofilms (Fig.
2).
The parent strain produced a thicker biofilm (typically around
28 µm) than the mutant (typically around 13 µm)
and produced more biomass. The structure of the parent biofilm
is typical of a mature oral biofilm (
26), comprising areas covered
by stacks and areas with little or no coverage that form channels
between the regions of biomass. The mutant produced smaller
stacks and clusters with less coverage and more intercellular
gaps, more typical of a biofilm during early development. The
reduced biofilm density in PKNB is not due to its reduced early
growth rate, as prolonged incubation did not result in an increase
in biofilm density. In PKNBC1, biofilm density was restored
to approximately 70% that of the parent biofilm (data not shown).
The fact that PKNBC1 showed only a partial restoration of the
biofilm defect whereas it gave levels of transformation greater
than the parent is presumably due to perturbation of the STPK-controlled
signal transduction pathways that results from overexpression
of
pknB on a multicopy plasmid.
The pknB mutant is sensitive to low pH.
The abilities of UA159 and its derivatives to grow at low pH
were examined by growing them on agar adjusted to pH 5.0 (
17).
Compared to the parent, PKNB showed reduced growth on pH 5.0
agar, whereas it grew as well as the parent on agar at pH 7.0.
PKNBC1 grew as well as the parent at both pH 5.0 and pH 7.0
(Fig.
3).
Summary.
Disruption of
pknB, encoding a eukaryotic-type STPK in
S. mutans,
causes defects in biofilm formation, acid resistance, and genetic
competence. Other genes with regulatory roles in these phenotypes
are known, raising the possibility that the defects in the
pknB mutant are the result of altered expression or activity of one
or more of these proteins.

FOOTNOTES
* Corresponding author. Mailing address: Division of Microbial Diseases, UCL Eastman Dental Institute, University College London, 256 Gray's Inn Road, London WC1X 8LD, United Kingdom. Phone: 44(0)20 7915 1256. Fax: 44(0)20 7915 1127. E-mail:
e.allan{at}eastman.ucl.ac.uk.


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Journal of Bacteriology, February 2006, p. 1628-1632, Vol. 188, No. 4
0021-9193/06/$08.00+0 doi:10.1128/JB.188.4.1628-1632.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
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