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Journal of Bacteriology, March 2006, p. 1691-1700, Vol. 188, No. 5
0021-9193/06/$08.00+0 doi:10.1128/JB.188.5.1691-1700.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Microbiology Unit, Department of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, United Kingdom
Received 7 July 2005/ Accepted 15 September 2005
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In E. coli, the inhibition of PBP2 with amdinocillin results in a rounding of cell shape and eventually cell lysis, while temperature-sensitive pbp2 mutations produce round cell morphologies when shifted to the restrictive temperature (5). PBP2 localizes as discrete foci along the longitudinal axis of E. coli (4) and also forms band-like structures perpendicular to the lateral wall in the gram-negative Caulobacter crescentus (8). PBP2 function is thought to depend upon the integral membrane protein RodA; as the genes encoding these proteins form an operon (14), mutations in either gene produce similar phenotypic effects (5) and localization of the transpeptidase of similar transpeptidase-integral membrane protein pairs depends upon the integral membrane protein partner (15). It is thought that PBP2, in concert with RodA, contributes to the synthesis of the peptidoglycan layer, specifically functioning in the extension of the lateral wall (5).
MreB is an actin-like cytoplasmic protein thought to be involved in peptidoglycan synthesis. This protein is essential in E. coli (12), C. crescentus (8), and Rhodobacter sphaeroides (23), and impairment of MreB function is associated with morphological abnormalities in all these bacterial species (8, 12, 23). In E. coli, MreB forms a helix spanning the length of the cell, and two-dimensional (2D) localization images also suggest that the protein forms a ring (22). In C. crescentus, in newly formed and elongating cells, MreB forms a helix along the length of the cell, while in early predivisional cells, MreB forms a ring at the site of septation and remains at this location until the completion of septation (9). In R. sphaeroides, MreB localizes to the sites of peptidoglycan synthesis, and 3D reconstructions reveal an MreB ring at midcell, rather than a helix in this bacterium, at all stages of cell growth (23). In C. crescentus, the localization pattern of PBP2 depends upon the presence of MreB, suggesting that the specific role of MreB may involve the organization of PBP2-containing peptidoglycan-synthetic complexes (8).
The mre locus consists of mreB, mreC, and mreD in many bacterial species (1, 8, 28). In E. coli, depletion of MreC results in cell shape defects and ultimately cell death (12). In E. coli, MreC localizes to the cytoplasmic membrane and interacts with the cytoplasmic MreB and the integral membrane protein MreD (12), and in C. crescentus, MreC interacts with PBP2 (7). A complex consisting of MreB, MreC, MreD, PBP2, and RodA is proposed to function in the synthesis of the peptidoglycan layer in E. coli, specifically contributing to the expansion of the longitudinal axis (12).
R. sphaeroides is an
-subgroup purple nonsulfur photosynthetic coccobacillus capable of growth under a range of conditions, including aerobic and photoheterotrophic growth conditions (2). The cytoplasmic membrane of aerobic R. sphaeroides cells is uninvaginated, while under photoheterotrophic conditions, the inner membrane invaginates to accommodate the photosynthetic apparatus. Early studies showed that PBPs of R. sphaeroides localized to the uninvaginated regions of the membrane, suggesting that proteins are targeted to different regions of the continuous membrane (21). Previously, a putative mreB-mreC-mreD-pbp2-rodA operon was reported in R. sphaeroides (23). This genetic arrangement suggested a functional interaction between the encoded proteins. This study investigates whether PBP2 and the mre-encoded proteins in R. sphaeroides physically colocalize to regions of the cell during any or all phases of cell growth and therefore whether a functional relationship might exist between any or all of these proteins.
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was used for all molecular cloning, strain S17-1
pir was used for conjugal transfer into R. sphaeroides, and strain M15 pREP4 was used for protein expression. E. coli strains were cultured in Luria-Bertani medium at 37°C with shaking. Kanamycin and nalidixic acid were used at 25 µg ml1, and ampicillin was at 100 µg ml1. |
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TABLE 1. Bacterial strains and plasmids used in this study
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Deletion construct. A derivative of pK18mobsacB was constructed for the generation of a pbp2 in-frame deletion strain as described below. The construct was sequenced to ensure that upstream and downstream regions were in frame and contained no errors. The construct was introduced into R. sphaeroides by allelic exchange as described previously (10, 19).
pbp2 in-frame deletion. A 0.5-kb region immediately upstream of pbp2 was amplified by PCR using primers that encompassed the start codon and included 5' EcoRI and 3' BamHI sites. A 0.5-kb region that included the five 3' codons and the downstream flanking DNA of pbp2 was amplified by PCR using primers that included 5' BamHI and 3' HindIII sites. The first PCR product was ligated into appropriately cut pK18mobsacB to produce pPAMK1. The second PCR product was ligated into appropriately cut pPAMK1 to generate the final construct, pPAMK2.
Inhibition studies. Early-log-phase R. sphaeroides cells were cultured aerobically in the presence of amdinocillin at 25 µg ml1 for 1 h at 30°C. Subsequently, cells were embedded in 1.2% agarose on microscope slides. DIC (differential interference contrast) images were acquired using a Nikon TE200 microscope and recorded with a cooled charge-coupled device camera (Hamamatsu). The images were processed with SimplePCI image analysis software (Digital Pixel).
Protein expression constructs. pbp2 and mreC were amplified by PCR using primers that included 5' BamHI and 3' HindIII sites. The primers were designed to amplify the sequence encoding the soluble periplasmic regions of PBP2 and MreC. The PCR products were ligated into appropriately cut pQE-80L (QIAGEN) to produce pBET1 and pBINX1, respectively. The vector attaches an N-terminal tag containing six histidine residues to the expressed protein, thereby facilitating purification. The constructs were sequenced to ensure that the coding sequence contained no errors.
Protein purification and antibody production. His-tagged, truncated PBP2 and MreC were expressed individually in E. coli M15 pREP4 cells containing pBET1 and pBINX1, respectively, and purified as described previously (13). Antibodies were raised against both of the truncated proteins in rabbits, and also against PBP2 in a guinea pig (Eurogentec).
Immunofluorescence staining. Cells were fixed and permeabilized as described previously (11, 23). For individual protein localization studies, immunofluorescence staining was performed as described previously (23), except that the blocking solution contained a 1:7,500 dilution of either PBP2 or MreC rabbit polyclonal antibodies. For colocalization studies, immunofluorescence staining was performed as described previously (23) with the following modifications. Cells were incubated in a blocking solution containing a 1:7,500 dilution of guinea pig polyclonal anti-PBP2 antibodies and either a 1:10,000 dilution of rabbit polyclonal anti-MreB antibodies or a 1:7,500 dilution of rabbit polyclonal anti-MreC antibodies. After being washed, the cells were incubated with blocking solution containing Alexa Fluor 568-conjugated goat anti-guinea pig at 40 µg/ml (Molecular Probes) and a 3:1,000 dilution in blocking solution of fluorescein isothiocyanate-conjugated goat anti-rabbit antibodies (Sigma).
Fluorescence analysis. DIC and fluorescence images were acquired using a Nikon TE200 microscope with either a fluorescein isothiocyanate filter set for the individual protein localization studies or a yellow fluorescent protein-DsRed filter set for the colocalization studies and were recorded with a cooled charge-coupled device camera (Hamamatsu). Z series were captured with a custom built piezo-driven (Physik Instruments) mechanical stage. The images were processed with SimplePCI image analysis software (Digital Pixel). Although all experiments were performed with both aerobically and photoheterotrophically grown cells, the DIC images were clearer and the fluorescence intensity was brightest in cells grown under photoheterotrophic conditions; therefore, unless otherwise stated, all images presented in this study were acquired from photoheterotrophically grown cells.
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FIG. 1. Localization of PBP2 in R. sphaeroides cells by immunofluorescence microscopy. (A) Localization in 2D. DIC images, fluorescence images, and an overlay of these images are shown from left to right. Bar, 1 µm. Representative fields of photoheterotrophic and aerobic cells. (B) Photoheterotrophic cells representing the different stages of the cell cycle: (i) newly formed, (ii) elongating, (iii) septation initiating, and (iv) septation nearing completion. The white arrows highlight the regions of intense fluorescence termed foci. In newly formed cells, two or three PBP2 foci were organized into bands across the cell. The number of PBP2 foci increased in elongating cells; two of these foci were commonly observed to form bands across the cell near midcell. As the cell cycle progressed to and through septation, PBP2 foci were observed to form bands across the cell near to the midcell sites of the forming daughter cells. The scale bar represents 1 µm. (C) 3D reconstruction of the PBP2 subcellular structure. (a) DIC and fluorescence images of a newly formed cell. (b) Optical sections through this cell; the bottom, middle, and top of the z series are shown. (c) 3D reconstruction of the z series at 0°, 60°, and 90°; the images are rotated vertically. (d) DIC and fluorescence images of a septating cell. (e) Optical sections through this cell; the bottom, middle, and top of the z series are shown. (f) 3D reconstruction of the z series at 180°, 240°, and 270°; the images are rotated horizontally. The cells in panel C are enlarged relative to those in panel A. No scale bar is presented for panel C, as the 3D reconstruction process can fractionally distorts the image parameters, and therefore, a scale bar might prove misleading in terms of the dimensions of the 3D reconstruction structure.
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FIG. 2. Colocalization studies of MreB and MreC with PBP2 in photoheterotrophic R. sphaeroides cells. (A) Graph showing the changes in the numbers of MreB and PBP2 foci per cell as the cell length increases throughout the cell cycle. White bars, MreB; gray bars, PBP2. A total of 153 cells were examined. (B) Graph showing the changes in the numbers of MreC and PBP2 foci per cell as the cell length increases throughout the cell cycle. White bars, MreC; gray bars, PBP2. A total of 162 cells were examined. (C) Graph showing the changes in the colocalization of MreB and MreC foci with PBP2 foci as the cell length increases throughout the cell cycle. White bars, MreB colocalized with PBP2; gray bars, MreC colocalized with PBP2. The error bars show the standard errors of the mean.
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MreB colocalizes with PBP2 in a cell cycle-dependent manner. In C. crescentus, the localization of PBP2 has been shown to depend upon MreB (8). Since the mreB and pbp2 genes of R. sphaeroides are found in the same operon (23), we reasoned that PBP2 and MreB may be functionally related. Therefore, in R. sphaeroides, we determined the localization of MreB and PBP2 simultaneously in the same cells using immunofluorescence microscopy. If MreB and PBP2 colocalized, it would suggest that the two proteins are functionally related.
The rate at which the number of PBP2 foci per cell increased as the cell cycle progressed differed from that of the MreB foci (Fig. 2A). In newly formed cells, there were similar numbers of PBP2 and MreB foci. However, the number of PBP2 foci increased as the cell cycle progressed, while the number of MreB foci remained relatively constant.
MreB localized with PBP2, but only at certain stages of the cell cycle (Fig. 2C and Fig. 3). In newly formed and elongating cells (cell length, <2.1 µm), 60% ± 3% (standard error of the mean [SEM]) of MreB foci localized with PBP2; however, in septating cells (cell length,
2.1 µm), MreB remained at the site of septation while PBP2 localized to the midcell sites of the forming daughter cells, with the number of colocalizing foci decreasing to 35% ± 4% (SEM). These data suggest that while most of the MreB and PBP2 molecules colocalize during elongation, this is not the case during septation.
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FIG. 3. Colocalization images of MreB and PBP2 in photoheterotrophic R. sphaeroides cells by immunofluorescence microscopy. Cells representing the different stages of the cell cycle are shown. DIC images, fluorescence images of MreB and PBP2, and an overlay of these fluorescent images are shown from left to right. The white arrows highlight MreB foci colocalizing with PBP2 foci; the gray arrows highlight MreB foci that are not colocalized with PBP2. In newly formed and elongating cells, MreB and PBP2 foci were frequently colocalized. However, in septating cells, MreB remained at the site of septation, while PBP2 localized in the forming daughter cells away from the site of septation. The scale bar represents 1 µm.
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The cellular positions of the colocalizing MreC and PBP2 foci were similar to the pattern observed for PBP2 (Fig. 4). In newly formed and elongating cells, the foci formed bands across the cell, which were predominately located at or near midcell. In cells undergoing septation, the foci were not observed at the site of septation but were positioned close to the midcell of the nascent/forming daughter cells. The colocalization data suggest that MreC and PBP2 colocalize throughout the cell cycle.
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FIG. 4. Colocalization images of MreC and PBP2 in photoheterotrophic R. sphaeroides cells by immunofluorescence microscopy. Cells representing the different stages of the cell cycle are shown. DIC images, fluorescence images of MreC and PBP2, and an overlay of these fluorescent images are shown from left to right. MreC colocalized with PBP2 throughout the cell cycle. The scale bar represents 1 µm.
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PBP2 is the target of amdinocillin, a penicillin class antibiotic, in E. coli and other gram-negative bacterial species (26). The R. sphaeroides PBP2 homologue possesses 36% sequence identity to E. coli PBP2 (23), and therefore, R. sphaeroides cells were treated with amdinocillin in an attempt at targeting PBP2. This strategy has also been successfully used in C. crescentus (20), whose PBP2 homologue is 39% identical to R. sphaeroides PBP2.
The treatment of R. sphaeroides with amdinocillin caused swelling at midcell and an increase in cell width and cell length (Fig. 5A and C), which was followed by cell lysis (measured as a decrease in culture optical density) (data not shown). These data suggest that, if the target of amdinocillin in R. sphaeroides is PBP2, then functional PBP2 is both essential for viability and required for the determination of the correct cell shape.
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FIG.5. Treatment of R. sphaeroides populations with amdinocillin results in phenotypic effects on cell shape prior to cell lysis. (A) DIC image of a population of R. sphaeroides incubated with amdinocillin for 1 h. The black arrows highlight cells that displayed increased cell widths; the white arrows highlight cells with increased cell lengths. The scale bar represents 1 µm. (B) A population of R. sphaeroides without amdinocillin. (C) Comparison of the lengths and widths of cells treated with amdinocillin and untreated. , untreated cells; , cells treated with amdinocillin. A total of 247 cells were analyzed. Amdinocillin treatment increased the mean cell width from 1.17 ± 0.04 µm to 1.46 ± 0.01 µm, while the mean cell length was increased from 2.39 ± 0.05 µm to 2.95 ± 0.07 µm. The errors in the cell length/width refer to the standard errors of the mean.
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During elongation, PBP2 localized as punctate foci organized as bands across the cell; the majority of these bands were found around the midcell of R. sphaeroides. 3D reconstructions showed that these fluorescent images represented partial rings plus disconnected foci, which, because of the diffraction limits of light microscopy, may represent unresolved helices. This localization suggests that PBP2 is involved in the elongation-specific phase of peptidoglycan synthesis but that it then occurs at distinct regions of the cell rather than diffusely throughout the lateral wall and that during this phase new material is deposited in a ringlike or helical manner. During septation, PBP2 was no longer visible at midcell but instead localized as bands across the cell at the midcell positions of the forming daughter cells. It is probable that an R. sphaeroides PBP3/FtsI homologue then performed peptidoglycan synthesis at the septum. These data suggest that peptidoglycan is being deposited, under the control of PBP2, at midcell until just before septation begins, when PBP2 relocalizes to the midcell positions of the daughter cells. The presence of PBP2 at midcell of the forming daughter cells suggests that, if localization reflects activity, elongation of the longitudinal axis occurs at the same time as septation-specific peptidoglycan synthesis. This possibility is supported by previous data for R. sphaeroides, which demonstrated that elongation continues as cells progress from the initiation of septation through to the completion of septation (23). The suggestion that elongation-specific peptidoglycan synthesis can occur at the same time as septation-specific peptidoglycan synthesis is also supported by studies of the gram-positive bacterium Streptococcus pneumoniae: in septating cells, the PBP2 homologue localizes in the forming daughter cells while the PBP3/FtsI homologue localizes at midcell (16). In addition, the staining of sites of nascent peptidoglycan synthesis in S. pneumoniae reflects this localization pattern: fluorescence is observed both at midcell and in the longitudinal cell walls of the forming daughter cells (3).
MreB, MreC, and PBP2 have all been implicated in the synthesis of the peptidoglycan layer (12), and in R. sphaeroides, they are encoded by the same operon (23); therefore, the colocalization of MreC and MreB with PBP2 was investigated. Colocalization is not necessarily indicative of related function, although given that these proteins are encoded by the same operon, it is likely that they will have similar functions. MreC and PBP2 colocalized throughout the cell cycle. In contrast, MreB localized with PBP2 only at specific stages of the cell cycle: the highest percentage of colocalization was observed during elongation, while the level of colocalization fell as septation occurred. These colocalization studies suggest either that these proteins directly interact and work together in the synthesis of peptidoglycan or that the proteins function independently at the same site in the formation of the peptidoglycan layer. The proteins whose functions involve peptidoglycan synthesis therefore appear to cluster in specific positions of the R. sphaeroides cell and to function, presumably cooperatively, in the deposition of new material. The constant colocalization of MreC and PBP2, if it reflects a functional relationship, suggests that these proteins may function in concert. The colocalization data on MreB and PBP2, again if they reflect a functional relationship, suggest that the two proteins interact during elongation but are involved in different cellular roles during septation.
A modified model of peptidoglycan synthesis in R. sphaeroides is proposed, based upon the localization data reflecting both functionality and functional relationships. (i) In elongating cells, peptidoglycan is synthesized in a helical or ringlike manner at or near midcell. This process is driven by a peptidoglycan-synthetic complex containing PBP2 and is supported by a range of proteins, including MreB and MreC. (ii) As the cell cycle progresses from elongation to septation, FtsI replaces PBP2 in the peptidoglycan-synthetic complex to drive synthesis of the peptidoglycan layer. MreB associates with this FtsI-containing peptidoglycan-synthetic complex and contributes to the formation of peptidoglycan at the site of septation. PBP2 and MreC relocalize in the nascent daughter cells to a site between the quarter and midcell positions and form additional peptidoglycan-synthetic complexes. (iii) During septation, peptidoglycan is synthesized in different regions of the cell by the FtsI- and PBP2-containing peptidoglycan-synthetic complexes. A bias toward the FtsI-containing peptidoglycan-synthetic complex results in a septation-specific dominance of peptidoglycan synthesis.
The deletion strategies routinely used for the mutation of nonessential genes in R. sphaeroides failed to produce mutant genotypes for pbp2. The addition of amdinocillin, the inhibitor of PBP2 in E. coli (5), to R. sphaeroides populations produced abnormalities in cell width and cell length and ultimately resulted in cell lysis. Similar phenotypic effects are also seen in C. crescentus populations treated with amdinocillin (20). These observations suggest that if amdinocillin is inhibiting PBP2, in both R. sphaeroides and C. crescentus, then this protein performs a role in cell shape that is essential for viability.
The cytoplasmic membrane of R. sphaeroides invaginates during photoheterotrophic growth; the resulting intracytoplasmic membrane contains the photosynthetic apparatus.The peptidoglycan synthesis enzymes are also embedded in the cytoplasmic membrane; it would be undesirable for peptidoglycan synthesis to occur in the invaginated folds of the membrane; therefore, a mechanism must exist for preventing peptidoglycan synthesis in these regions. Previous work demonstrated that the PBPs of R. sphaeroides are localized exclusively to the noninvaginated regions of the cytoplasmic membrane (21), i.e., to the portions of the cytoplasmic membrane that are adjacent to the peptidoglycan layer; thus, inappropriate peptidoglycan synthesis in the invaginated membrane folds is prevented. An intriguing question remains: how are the PBP proteins excluded from the invaginated region of the membrane? In this study, PBP2 has been shown to be organized into a helical or ringlike subcellular structure under both aerobic and photoheterotrophic conditions. One possible role for this structure is to keep the PBP2 out of the invaginated membrane regions. Since aerobic cells have fewer membrane invaginations than photoheterotrophic cells, the observation that the PBP2 organization is the same under both conditions suggests that this arrangement of PBP2 is capable of accommodating variable levels of membrane invagination.
Thanks to G. H. Wadhams for continued assistance throughout this study and to Mark Leaver, Alex Formstone, and Simon Townsend for their help.
Supplemental material for this article may be found at http://jb.asm.org/. ![]()
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