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Journal of Bacteriology, March 2006, p. 1856-1865, Vol. 188, No. 5
0021-9193/06/$08.00+0 doi:10.1128/JB.188.5.1856-1865.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Biomedical Research, The University of Texas Health Center at Tyler, Tyler, Texas 75708-3154,1 Drug Discovery Division, Southern Research Institute, Birmingham, Alabama 352052
Received 8 November 2005/ Accepted 12 December 2005
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FtsZ, a bacterial homolog of tubulin, is a key player in cell division and is essential for initiation of this process (22, 32). FtsZ protein catalyzes the formation of distinct structures, referred to as FtsZ rings (Z rings), at the midcell site and sets up a scaffold for ordered assembly of other cell division proteins. The combined action of multiple cell division proteins results in septation (22, 32). FtsZ protein-catalyzed Z-ring assembly represents the earliest known step in the septation process. FtsZ protein polymerizes in vitro into protofilaments in a GTP-dependent manner, and its assembly dynamics are regulated by GTP hydrolysis (25). FtsZ is a well-conserved protein that is present in nearly all prokaryotes (22). Due to its central and essential role in bacterial cytokinesis, and its absence in higher eukaryotes, the FtsZ protein is considered an attractive antimicrobial drug target (3, 19, 21, 22, 25, 44).
Earlier studies on ftsZ and the cell division process in mycobacteria focused on Mycobacterium smegmatis, a rapid grower with an average doubling time of 3 h. These studies indicated that ftsZ is an essential cell division gene (10) and that M. tuberculosis is exquisitely sensitive to the intracellular levels of FtsZ (FtsZTB), as constructs expressing ftsZTB from native or heterologous promoters are not stably maintained (9). Because of the toxicity associated with elevated expression levels of ftsZ in M. tuberculosis, attempts to visualize FtsZ structures in M. tuberculosis have not been successful. At the biochemical level, FtsZTB has been purified, characterized, and found to exhibit slow polymerization and weak GTPase activities in vitro (30, 43).
We have been unable to localize FtsZ structures in mycobacteria by immunohistochemistry due, perhaps, to their thick and unyielding cell walls (9). This feature, combined with the toxicity associated with the elevated levels of ftsZTB expression in M. tuberculosis, led us to develop an ftsZTB reporter strain where FtsZ-green fluorescent protein (GFP) fusion protein can function as the sole source of FtsZ (10). With this strain, we visualized FtsZTB structures in M. tuberculosis grown under different conditions. We describe here the FtsZ localization in cells growing in culture and in macrophages.
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Construction of ftsZ expression plasmids pACR1, pJFR41, and pJFR66. Plasmids pACR1 and pJFR66 were created by cloning the PCR-amplified fragments encompassing the ftsZsmeg and ftsZTB coding regions and their respective 1-kb 5' flanking regions (Table 1) in integrating plasmids. Plasmid pJFR41 was created by cloning the ftsZTB-gfp fusion (9) downstream of the amidase promoter in pJFR19 (Table 1). The gfp gene in pJFR41 was derived from the fluorescence-activated cell sorter-optimized mut3 variant amplified from pFV25 (5, 9). All PCR products were confirmed by sequencing.
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TABLE 1. Plasmids used in this study
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TABLE 2. Primes used in this study
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FIG. 1. Schematic for construction of M. tuberculosis 41. Plasmids are described in Table 1, and details for creating M. tuberculosis 41 are described in the text. Gray box, ftsZTB coding region; black box, deleted region in ftsZTB; white box, 5' and 3' flanking regions of ftsZTB. SCO, single-crossover; Mtb, M. tuberculosis.
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Immunoblotting experiments. Immunoblotting was carried out to detect FtsZTB and FtsZTB-GFP in cellular lysates of broth- and in vivo-grown wild-type M. tuberculosis and M. tuberculosis 41 as previously described (10). We used M. tuberculosis SigA protein to normalize for protein amounts loaded per lane when comparing the FtsZ levels in broth- and macrophage-grown M. tuberculosis. SigA levels are not known to change during intracellular growth of M. tuberculosis (45). Blots were probed simultaneously with anti-FtsZTB antibodies and monoclonal antibodies to the sigma 70 subunit of E. coli RNA polymerase. The latter have been shown to bind mycobacterial SigA protein (29, 45). Anti-sigma 70 antibodies were obtained from Neoclone Biotechnology (Madison, WI) and used as recommended. Immunoblots were processed with the ECF Western blotting kit from Amersham (Piscataway, NJ) and scanned on a Bio-Rad Molecular Imager (FX), and FtsZ levels were determined with the volume analysis function of the QuantityOne software.
Fluorescence microscopy experiments. Wild-type M. tuberculosis and M. tuberculosis 41 were grown for various periods of time with shaking, harvested by centrifugation, washed in phosphate-buffered saline, fixed in 1% paraformaldehyde, and stored at 4°C until further use. Bacteria were examined by bright-field and fluorescence microscopy with a Nikon Eclipse 600 microscope equipped with a 100x Nikon Plan Fluor oil immersion objective with a numerical aperture of 1.4 and a standard fluorescein isothiocyanate filter set (Chroma). Images were acquired with a Photometrics Coolsnap ES camera and Metapmorph 6.2 imaging software (Universal Imaging Corporation). Images were optimized with Adobe Photoshop 7.0. Some images were processed with the homomorphic fast Fourier transform (FFT) filtering function of the Metamorph 6.2 software. When applied to an image, this function performs simultaneous contrast enhancement and compression of the brightness dynamic range.
Macrophage infection experiments. Monocyte-derived human macrophage cell line THP-1 was infected with either M. tuberculosis or M. tuberculosis 41. Uninfected THP-1 cells were maintained in RPMI medium with 10% fetal bovine serum. Prior to infection, THP-1 cells were exposed to 50 nM phorbol-12-myristate-13-acetate for 24 h and allowed to differentiate into macrophages. Approximately 5 x 105 cells/ml were infected with M. tuberculosis or M. tuberculosis 41 at a multiplicity of infection of 1:10 (macrophage/bacterium ratio). After 3 h of phagocytosis, macrophages were washed to remove nonphagocytosed bacteria and further incubated. At the indicated time points, either the macrophages were lysed with 0.09% sodium dodecyl sulfate (SDS) and bacteria recovered following centrifugation at 14,000 rpm for 5 min or the infected macrophage monolayers were washed three times with phosphate-buffered saline, scraped, and resuspended in Tris-EDTA buffer. The recovered bacteria or macrophages containing bacteria were lysed by bead beating for 3 min in a mini bead beater. Cleared lysates were obtained by centrifugation, separated on SDS-polyacrylamide (PA), transferred to nitrocellulose, and probed for FtsZ levels as outlined above. For microscopy, the recovered bacteria were fixed in 1% paraformaldehyde and visualized by bright-field or fluorescence microscopy, as needed.
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We used the two-step recombination protocol of Parish and Stoker to disrupt the native ftsZ gene in the presence of an integrated copy of ftsZTB (27). Mapping of ftsZTB transcriptional start points identified four promoters, with the farthest one at 787 nucleotides upstream of the ftsZTB start codon (data not shown). Accordingly, a DNA fragment bearing the ftsZTB coding region and its 1-kb upstream flanking region was amplified, cloned in integrating vector pMV306H (pJFR66 in Table 1), and used during the selection of DCOs as described in Materials and Methods. One mutant DCO, designated M. tuberculosis 66 and carrying a functional copy of ftsZTB at the attB site, was selected and used as the base strain to generate the ftsZTB-gfp reporter strain (M. tuberculosis 41) by a plasmid-swapping protocol (Fig. 1 and Materials and Methods) (28, 30). Southern hybridization of M. tuberculosis 41 genomic DNA with the ftsZ gene probe identified two bands: one corresponding to the integrated ftsZ copy and the other to the mutant copy carrying an 840-bp internal deletion in the ftsZTB gene (Fig. 2A). A parallel blot hybridized with the gfp gene probe identified only one band corresponding to the integrated copy (Fig. 2B). These results confirmed that the transformation-based plasmid-switching protocols successfully replaced the resident plasmid carrying PftsZ-ftsZTB with an incoming plasmid containing Pami-ftsZTB-gfp.
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FIG. 2. M. tuberculosis ftsZ gene can be replaced with ftsZ-gfp. (A and B) Southern hybridization profiles of M. tuberculosis 41 and wild-type (WT) M. tuberculosis DNAs. Wild-type M. tuberculosis or M. tuberculosis 41 genomic DNA was digested with NotI, electrophoretically resolved on agarose gels, transferred to nitrocellulose membranes, and probed with a 32P-labeled ftsZ (A) or gfp probe (B). NotI-digested pJFR41 plasmid DNA was used as a positive control. Lanes: 1, pJFR41; 2, wild-type M. tuberculosis; 3, M. tuberculosis 41. Bands corresponding to a chromosomal copy of ftsZ (wild-type copy), an integrated copy of ftsZ-gfp (Integ.copy), and a mutant copy are indicated. Only the wild-type copy of ftsZ can be seen in M. tuberculosis. The arrowhead indicates the position of the ftsZ-gfp integrated copy. (C and D) Verification of M. tuberculosis 41 by immunoblotting. One microgram of total cell lysate each from wild-type M. tuberculosis or M. tuberculosis 41 was resolved on a 12% SDS-PA gel, transferred to nitrocellulose membrane, and probed with either anti-FtsZ (C) or anti-GFP (D) specific antibodies. Positions of FtsZ and FtsZ-GFP are marked. Lanes: M, markers; 1, M. tuberculosis lysate; 2, M. tuberculosis 41 lysate.
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The viability of M. tuberculosis 41 decreased by nearly 5 log units when actively growing cultures were plated on medium lacking acetamide (Fig. 3A). The growth rate of M. tuberculosis 41, slightly slower than that of wild-type M. tuberculosis, slowed down further in the absence of acetamide (Fig. 3B). Although immunoblotting did not reveal any significant differences in FtsZ-GFP levels when the strain was grown with and without acetamide for four doublings (data not shown), the absence of inducer led to a 20% increase in average cell length (from 2.47 µm [n = 119] to 2.98 µm [n = 105]). Thus, growth in the absence of acetamide inhibited cell division and led to a reduction in the viability of M. tuberculosis 41. Therefore, loss of viability perhaps occurs before major changes in the FtsZ level become apparent. Furthermore, immunoblotting may not be sensitive enough to discern the small changes in FtsZ levels that are nevertheless able to affect the cell division of M. tuberculosis 41 grown in the absence of acetamide. Expression from the inducible amidase promoter is known to be leaky in M. tuberculosis (4, 9, 10, 15; our unpublished data). Since M. tuberculosis 41 required acetamide for viability, these data also suggest that the leaky expression is not sufficient to sustain the growth of this strain. Furthermore, growth in the absence of acetamide beyond four doublings may be required to see a reduction in FtsZ levels. Together, the above results confirm that FtsZTB-GFP is the only FtsZ protein produced in M. tuberculosis 41 and suggest that it is functional in M. tuberculosis cell division. It is pertinent to note that although merodiploid strains producing FtsZ-GFP fusion proteins have been reported in other bacteria, efforts to utilize an ftsZ reporter strain where ftsZ-gfp functions as the sole source of ftsZ have met with limited success. For example, in E. coli, where ftsZ dynamics are well characterized at the genetic and biochemical levels, FtsZ-GFP is not fully capable of replacing the function of native FtsZ (20, 37). Similarly, fusion of the only copy of ftsZ to gfp in Bacillus subtilis resulted in a temperature-sensitive phenotype due, perhaps, to the inability of the fusion protein to fold properly at high temperature (17). In Streptomyces coelicolor, ftsZ-gfp is capable of complementing an ftsZ chromosomal null mutation but the resultant strain exhibits a delayed and defective sporulation phenotype (14).
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FIG. 3. M. tuberculosis 41 needs acetamide for growth. (A) Viability of M. tuberculosis 41. Actively growing cultures of wild-type (WT) M. tuberculosis or M. tuberculosis 41 were plated on 7H10 Middlebrook agar plates with or without 0.2% acetamide. Colony counts obtained after 3 weeks of incubation at 37°C are shown. Means and standard errors from three separate experiments are shown. (B) Growth of M. tuberculosis 41 in the presence or absence of acetamide. Exponentially growing cultures of M. tuberculosis 41 were washed two times with medium lacking acetamide, followed by growth in medium with (squares) or without (triangles) acetamide (acet.). For comparison, wild-type M. tuberculosis H37Ra was also grown (circles). Cultures were grown with shaking at 37°C, and their optical density at 600 nm (O.D. 600) was measured at the indicated times. Mtb, M. tuberculosis.
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FIG. 4. Microscopy of M. tuberculosis 41. Actively growing cultures of M. tuberculosis 41 grown with 0.2% acetamide were examined by fluorescence (a and c) and bright-field (b and d) microscopy. Images were selected to show the shape, size, and FtsZ structures of as many cells as possible and therefore do not reflect the actual frequency of the various FtsZ structures seen (Table 3). Arrowheads and arrows indicate midcell FtsZ-GFP rings and polar FtsZ-GFP localization, respectively.
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TABLE 3. Presence of Z rings in cells
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2.2 µm (N = 38), whereas that of the cells with evident midcell bands was 4.0 µm (N = 59). Since wild-type M. tuberculosis cells grown under similar conditions were
2.1 µm (N = 100) in length, this approximately twofold increase suggested that the polar structures could be remnants of septa from the previous division event. The above interpretation assumes that the polar localizations of FtsZ were not unique to M. tuberculosis 41 and could be observed in the parent strain. Alternatively, it is possible that interactions of FtsZTB and negative regulators of Z-ring assembly in M. tuberculosis, if any, were perturbed in M. tuberculosis 41, resulting in localization of FtsZ at non-midcell sites. We tend to favor the first interpretation because the average size of cells with polar localizations was similar to the average length of actively growing M. tuberculosis cells. Most cells showed dark coloration at the cell poles. While the exact nature of these dark spots is unclear, they could be due to the external ridges observed at the cell poles of M. tuberculosis by transmission electron microscopy (6). Disassembly of Z rings by SRI-3072. Recently, a group of structurally diverse small-molecule inhibitors, named zantrins, was shown to perturb the Z-ring assembly in E. coli and inhibit the growth of several bacterial species in broth cultures. These compounds interfered with the GTPase activity of E. coli FtsZ (FtsZEC) and FtsZTB, caused destabilization of FtsZEC protofilaments, increased filament stability, and in some cases interfered with Z-ring assembly (21). The effects of zantrins on M. tuberculosis growth and FtsZTB assembly were not examined in these experiments. We (R.R.) recently showed that SRI-3072, a small-molecule inhibitor belonging to a class of 2-alkoxycarbonylaminopyridines, inhibited the growth of M. tuberculosis with an MIC of 250 ng/ml (0.47 µM) (44). This compound also inhibited the GTPase activity of FtsZTB in vitro, albeit with low affinity (i.e., 20% reduction in activity at 100 µM). Since it was unknown whether SRI-3072 affected FtsZ polymerization and Z-ring assembly in vivo, we addressed this question with M. tuberculosis 41.
Actively growing cultures of M. tuberculosis 41 were exposed to 0.56 µM SRI-3072 for various times, and effects of the inhibitor on growth and FtsZTB structures were examined. As expected, SRI-3072 interfered with the growth of M. tuberculosis 41 (Fig. 5A). Fluorescence microscopy revealed a gradual disappearance of Z rings (Fig. 5B, parts a, c, e, and g) with increasing times of exposure. After 24 h of exposure, a reduction in the number of cells containing midcell Z rings was noted, although FtsZ-GFP localization at random spots was evident (data not shown; Fig. 5B, parts e to h). After 48 h of exposure, FtsZ-GFP localization at random spots also became compromised and a small increase in cell length was noted (Fig. 5B and C). Midcell FtsZTB-GFP bands were present in approximately 2.2% of drug-treated cells, whereas they accounted for 11% in untreated controls (Table 3). By day 5, almost no distinct Z rings were evident; rather, only diffuse and faint fluorescence was seen in most cells (Fig. 5B, parts g and h). A modest increase in cell length combined with the disappearance of Z rings is consistent with the interpretation that SRI-3072 interfered with FtsZTB ring assembly and cell division. It is pertinent to note that zantrins, which inhibit the growth of a wide range of bacteria, did not cause overt filamentation (21). In comparison to SRI-3072-treated cells, 4% of untreated cells had midcell Z rings after 120 h of growth (not shown). We have shown previously that the FtsZ levels in M. tuberculosis decrease during the stationary phase (9). The reduction in the number of cells with midcell Z rings at 120 h of growth presumably reflects the fact that these cells were in the stationary phase of growth. Treatment of M. tuberculosis 41 with SRI-3072 for 72 h caused an approximately 33% decrease in FtsZ levels, whereas no change in FtsZ levels was noted in untreated controls (data not shown). Interestingly, removal of SRI-3072 after 48 h of exposure did not result in recovery of viability (data not shown). It is possible that the compound SRI-3072 has inhibitory effects on other metabolic processes as well. The development and characterization of new antimycobacterial agents that affect M. tuberculosis proliferation are of great importance. The M. tuberculosis 41 reporter strain can potentially be used for evaluating the effects of new and reported inhibitors of FtsZTB activities in vivo.
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FIG. 5. SRI-3072 inhibits cell division and growth of M. tuberculosis 41. (A) Effect of SRI-3072 on growth of M. tuberculosis 41. Exponentially growing cultures of M. tuberculosis 41 were diluted to an optical density at 600 nm [OD (600 nm)] of 0.2 and grown in the presence or absence of 0.56 µM SRI-3072. The culture optical density at 600 nm was measured for up to 6 days and plotted. (B) Z-ring formation is inhibited by SRI-3072. M. tuberculosis 41 was grown in the presence of acetamide and 0.56 µM SRI-3072 for various periods of time and examined by fluorescence (a, c, e, and g) and bright-field (b, d, f, and h) microscopy. Images were captured, analyzed, and processed as described in Materials and Methods. Parts: a and b, no treatment; c and d, 24 h; e and f, 48 h; g and h, 120 h. (C) SRI-3072 inhibits cell division. Cell length measurements were made for untreated (M. tuberculosis wild type [WT], M. tuberculosis 41) and SRI-3072-treated M. tuberculosis 41 cells (M. tuberculosis 41/D1, M. tuberculosis 41/D2, and M. tuberculosis 41/D5). D1, D2, and D5 indicate 24, 48, and 120 h of treatment. At least 100 cells for each time point were measured with the Metamorph 6.2 software. Mtb, M. tuberculosis.
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FIG. 6. Growth of M. tuberculosis in macrophages leads to filamentation. Wild-type M. tuberculosis or M. tuberculosis 41 was used to infect monolayers of gamma interferon-activated THP-1 macrophages at a multiplicity of infection of 1:10. After 3 h of incubation, unattached bacteria were washed off and macrophages were cultured for 72 h. Macrophages were then lysed and bacteria collected by centrifugation and examined by fluorescence and bright-field microscopy. (A) Macrophage-grown wild-type M. tuberculosis. Bright-field images of broth (i)- and macrophage (ii)-grown M. tuberculosis are shown. (B) Lengths of intracellular M. tuberculosis cells. Cell length measurements were made for broth-grown (RV Broth) and intracellular wild-type M. tuberculosis after 3 days (Rv.D3) of growth in THP-I cells. (C) Broth- and macrophage-grown M. tuberculosis 41. Fluorescence (i and iii) and bright-field (ii and iv) images of broth (i and ii)- and macrophage (iii and iv)-grown M. tuberculosis 41 are shown. Arrowheads indicate either bud-like structures or Z rings (Z). (D) Macrophage-grown M. tuberculosis cells show non-midcell localization of FtsZ. Fluorescence images of macrophage-grown M. tuberculosis 41 bacteria were manipulated with the FFT processing function of the Metamorph 6.2 software (see Materials and Methods). This revealed the presence of almost spiral-like structures of FtsZ-GFP along the length of the cells (arrows in parts iii and vi). Parts i and iv and parts ii and v are respective bright-field and fluorescence images. Images in parts iii and vi are FFT processed. Images in panel D are slightly enlarged to show the FtsZ-GFP structures more clearly.
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FtsZ levels in bacteria grown in macrophages or in broth are comparable.
We considered whether the low frequency of Z rings at midcell sites during intracellular growth was due to altered levels of FtsZ. Cellular lysates from macrophage-grown bacteria were prepared and FtsZ levels were determined by immunoblotting with anti-FtsZTB antibodies. Since protein lysates prepared from these bacteria could be contaminated with small amounts of macrophage proteins, FtsZ levels were normalized to those of SigA. The levels of SigA, a housekeeping sigma factor, are known to be stably maintained under various conditions of growth in broth and in vivo (13, 45). The immunoblots were therefore probed simultaneously with anti-FtsZTB and monoclonal anti-
70 antibodies. Analysis by a fluorescence imager indicated that the ratio of FtsZ to SigA in lysates prepared from bacteria grown in macrophages was comparable to the ratio obtained for broth-grown bacteria (Fig. 7; data not shown).
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FIG. 7. FtsZ levels in macrophage-grown M. tuberculosis. Levels of FtsZTB and FtsZTB-GFP in broth- and macrophage-grown bacteria were determined by immunoblotting. Cellular lysates of broth- and macrophage-grown bacteria were prepared as described in Materials and Methods. Bacterial pellet was lysed by bead beating, resolved by SDS-PA gel electrophoresis, transferred to nitrocellulose membranes, probed with anti-FtsZTB and monoclonal anti-E. coli sigma 70 antibodies, and processed as previously described, with the ECF Western blotting kit from Amersham (12). In some cases, macrophages containing bacteria were pelleted and directly lysed by beat beating (lane 5) and processed as described above. Lanes: 1, recombinant FtsZTB protein; 2, lysate from broth-grown M. tuberculosis 41; 3, lysate from macrophage-isolated M. tuberculosis 41; 4, lysate from broth-grown wild-type M. tuberculosis; 5, lysate from macrophage-grown wild-type M. tuberculosis. Note that lysates in lane 5 were obtained by bead beating macrophages containing wild-type M. tuberculosis, whereas for lane 3, bacteria were first recovered from macrophages by gentle lysis and then cellular lysates were prepared by bead beating. Although the former approach (lane 5) resulted in a slightly higher background level compared to the one in lane 3, the ratio of SigA to FtsZ was unaffected. Positions of SigA, FtsZTB, and FtsZTB-GFP are marked.
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Bacterial filamentation is often triggered by a wide variety of factors, including exposure to DNA-damaging agents and to antibacterial agents that interfere with FtsI activity (recently reviewed in reference 24). Filamentation during intracellular growth has also been reported for some gram-negative pathogens. For example, Salmonella enterica serovar Typhimurium growing in murine fibroblast cells (23) and contractile vacuoles of amoebae (11), S. enterica in macrophages (39), and uropathogenic E. coli in superficial bladder epithelial cells (26) are all filamentous. It is, however, pertinent to note that the filamentous cells of S. enterica serovar Typhimurium have distinct FtsZ bands at presumptive midcell locations, and a defect in the histidine biosynthetic pathway is correlated with the observed filamentation phenotype (16). The filamentation phenotype of M. tuberculosis during intracellular growth suggests that the pathogen's cell division process is delayed in response to infection, and this delay could be attributed to compromised function of FtsZTB. Characterization of M. tuberculosis 41 should greatly help us to identify the factors that affect the cell division process during intracellular growth of M. tuberculosis.
We thank Jaroslaw Dziadek for help with the construction of some plasmids and Zafer Hatahet, William Margolin, Harold P. Erickson, and Marianthi Coronéou for insightful comments and helpful suggestions.
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