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Journal of Bacteriology, March 2006, p. 2056-2062, Vol. 188, No. 6
0021-9193/06/$08.00+0 doi:10.1128/JB.188.6.2056-2062.2006
United States Department of Agriculture, Agricultural Research Service, Microbial Food Safety Research Unit, Delaware State University, Dover, Delaware 19901,1 Biopolymer Mass Spectrometry Core Technologies, Eastern Regional Research Center, Wyndmoor, Pennsylvania 190382
Received 27 October 2005/ Accepted 6 January 2006
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Over the past two decades, numerous virulence factors have been identified in V. vulnificus based on cell culture and animal models; however, the validity of these models in assessing virulence has come into question (7). A case in point involves V. vulnificus protease, a well-characterized metalloprotease (23). In the mouse model, injection of this protease causes skin necrosis; however, knockout of the gene in V. vulnificus does not attenuate the symptoms in Vibrio-infected laboratory animals (34).
Recently, we isolated and characterized a phosphoglucose isomerase (PGI) in V. vulnificus (30). This PGI exhibits not only isomerase activity but also lysyl aminopeptidase (LysAP) activity (30). Lysyl aminopeptidases are well-known processing enzymes which can cleave kinin peptides to elicit signal transduction cascades that are responsible for inflammation, vasodilation, enhanced vascular permeability, and other physiological responses (2, 29). Since PGI-LysAP activity occurs on the surface of the bacterium (30), it may be involved in Vibrio spread once the bacterium gains entry into the circulatory system or tissues of a susceptible animal host. In the absence of consistent results in studies of virulence in animal models, we evaluated the use of mass spectrometry, Tricine gel electrophoresis, and a fluorescent ninhydrin assay for free lysine to determine the proteolytic potential of PGI-LysAP toward human-derived peptides that are linked with bacterial invasiveness and other pathological conditions.
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Measurement of LysAP activity. The spectrophotometric measurement of LysAP activity was performed as previously described (29, 30) using the synthetic substrate L-lysyl-7-amino-4-methylcoumarin (L-Lys-AMC) (catalog no. AFC-008; MP Biomedicals, Aurora, IL). In essence, a 20 mM stock of L-Lys-AMC was prepared in dimethyl sulfoxide. Reaction mixtures contained 100 µl of chromatographic fraction or 1 µl of Centricon concentrate, 20 µM (1 µl) of stock L-Lys-AMC, and 20 mM Tris-HCl, pH 9.0, in a total volume of 1,000 µl. The LysAP activity was measured on an LS-50B luminescence spectrophotometer (Perkin Elmer, Shelton, CT) for 3 min at 21°C at an excitation wavelength of 380 nm (Ex 380) and an emission wavelength of 460 nm (Em 460). When L-Lys-AMC is used as the substrate, 1 unit of LysAP activity is defined here as the activity required to produce an increase of 1 fluorescent unit as measured at Ex 380 and Em 460 at pH 9.0 and at 21°C over 3 min.
Peptidyl substrates. The following peptidyl substrates were used in this study: bradykinin (BK); lysyl (Lys)-BK, also known as kallidin; Lys-(des-Arg9)-BK, also known as des-Arg10-kallidin; neurokinin A; Met-Lys-BK; myosin light chain fragment (residues 11 to 23); and histatin 8. The source, mass, and sequence of each peptide are listed in Table 1. These substrates were selected because all, except the BK, have a lysyl residue at or near the amino termini, and the kinin peptides mediate signal transduction pathways that enhance bacterial invasiveness (17-19, 21). Bradykinin was chosen to serve as a lysine-negative control. Stock solutions of the peptides were prepared by dilution to approximately 1 µg/µl in high-performance liquid chromatography (HPLC)-grade water, and aliquots were stored at 20°C.
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TABLE 1. Sources, masses, and amino acid sequences of seven peptides used in this study
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Mass spectrometry.
Substrate digestions and the negative controls were prepared as described above (see "Fluorescent ninhydrin assay for free L-lysine"). Peptides and their associated PGI-LysAP digests were extracted using C18 ZipTip pipette tips (Millipore), washed with HPLC-grade water containing 0.1% trifluoroacetic acid (TFA), reextracted with acetonitrile-water (50:50) containing 0.1% TFA, and mixed with a recrystallized
-cyano-4-hydroxy-cinnamic acid matrix solution (5 mg/ml; acetonitrile-water [50:50] containing 0.1% TFA) to a final concentration between 100 fmol and 1 pmol/µl. Approximately 0.6 to 0.7 µl of the peptide-matrix solution was spotted onto target plates. Mass spectra of the peptides were acquired by matrix-assisted laser desorption/ionization-two-stage time of flight mass spectrometry (MALDI-TOF-TOF) on a 4700 Proteomics Analyzer mass spectrometer (Applied Biosystems, Framingham, MA) in the positive reflection mode with a 200-Hz neodymium-yttrium aluminum garnet 355-nm laser. Spectra were obtained by averaging 1,000 acquired spectra in the mass spectrometric mode. Conversion of time of flight to mass for the protonated monoisotopic ions, (M + H)+, was based on the calibration of the instrument with a peptide standard calibration kit (Applied Biosystems) that contained the following peptides: des-Arg1-bradykinin (m/z 904.4681), angiotensin I (m/z 1,296.6853), Glu1-fibrinopeptide B (m/z 1,570.6774), adrenocorticotropin hormone (ACTH) clips 1 to 17 (m/z 2,903.0867), ACTH clips 18 to 39 (m/z 2,465.1989), and ACTH clips 7 to 38 (m/z 3,657.9294), where m/z is the mass-to-charge ratio. The loss of amino-terminal residues was determined as the difference between the masses of the intact peptides and the masses of the peptide fragments obtained after digestion with PGI-LysAP. Results were compared with corresponding peptide masses that were calculated using the ExPASy Proteomics Server of the Swiss Institute of Bioinformatics, located at http://ca.expasy.org/tools/peptide-mass.html.
Comparative SDS-PAGE on Tricine gels.
Chromatographically purified V. vulnificus PGI-LysAP was diluted with buffer (20 mM Tris-HCl, pH 9.0) to 500 units per µl (30). Digestions were performed by combining up to 20 µg of each substrate, 1,000 units of PGI-LysAP, and 15 µl of 20 mM Tris-HCl, pH 9.0, and digesting for 2 h at 37°C. Negative controls consisting of PGI-LysAP combined with buffer but without the addition of substrate were also incubated for 2 h at 37°C. Reactions were stopped by boiling to near dryness followed by the addition of 15 µl of Tricine sample buffer (200 mM Tris-HCl [pH 6.8], 40% glycerol, 2% sodium dodecyl sulfate [SDS], and HPLC-grade H2O) and boiling for an additional 3 to 5 min with the lids open to reduce the volume to less than 15 µl, which is the volume that will fit into the well of a 15-well gel. We modified the Tricine sample buffer formulation of Bio-Rad to exclude the Coomassie blue G-250, since it migrated at approximately the same rate as smaller (
1,000-Da) peptides and interfered with their visualization on the gels. The hydrolysis of the amino-terminal residue(s) from peptidyl substrates by PGI-LysAP was evaluated by comparative SDS-polyacrylamide gel electrophoresis (PAGE) on 16.5% Tricine Minigels (Bio-Rad Laboratories, Hercules, CA) under reducing (ß-mercaptoethanol) conditions. The negative controls and the PGI-LysAP-digested samples were electrophoresed side by side in Tris/Tricine/SDS running buffer (Bio-Rad) at 80 V for 1 h. Peptides were stained for 5 min with Coomassie G-250, briefly destained, and digitally scanned, and the migrations of the bands for the undigested samples and the PGI-LysAP-digested samples were compared.
Kinetics of Lys-BK digestion. Lys-BK was used to evaluate the rate of free L-lysine production. The effects of digestion duration were determined by combining 100 µg of stock Lys-BK (at 25 µg/µl stock) with 20 µl of 20 mM Tris-HCl, pH 9.0, and 1,000 units of chromatically purified PGI-LysAP, centrifuging for 2 s, and incubating at 37°C for 0 to 2 h at 30-min intervals. After each period, reactions were stopped by placing the tubes in boiling water for 5 min and then at 4°C. Free lysine was directly determined by use of the fluorescent ninhydrin reaction and indirectly determined by MALDI-TOF-TOF of the hydrolyzed Lys-BK (BK product). Substrate cleavage was also evaluated on Tricine gels after the digestion of 50 µg of Lys-BK with 1,000 units of enzyme in 10 µl of 20 mM Tris-HCl, pH 9.0, for 0 to 2 h at 15-min intervals. The positive control, consisting of substrate and buffer only, was incubated for 2 h at 37°C before boiling.
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TABLE 2. Peptides identified by mass spectrometry before and after digestion with PGI-LysAP from Vibrio vulnificus
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TABLE 3. Free lysine released from kinins and other peptides after digestion with PGI-LysAPa
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The kinetics of Lys-BK digestion. Lys-BK has an (M + H)+ ion at an m/z of 1,188, and the enzymatic removal of the lysyl residue produces BK with an m/z of 1,060. We used mass spectrometry to determine the percentage of BK present in a Lys-BK digest at 30-min intervals for 2 h by comparing the ion intensities at the corresponding m/z. By plotting the percentage of the digestion product at m/z 1,060 against the digestion duration (Fig. 1A), one sees a rapid increase in BK production between 0 and 30 min, a tapering off between 30 and 90 min, and an apparent reduction from 90 to 120 min. Both the tapering off and the reduction of product at m/z 1,060 can be accounted for by the continued, sequential processing of BK by the cleavage of Arg from the amino-terminal end of the peptide, which effectively reduces the amount of product at m/z 1,060. This is consistent with the digestion data shown in Table 2 for Lys-BK, where Lys is first removed, followed by the Arg. About 2% of the Lys was cleaved at 0 min, due to the lag period required for setting up the digests and subsequently inactivating the enzyme by boiling.
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FIG. 1. Bradykinin and free lysine production from Lys-BK digested with PGI-LysAP from Vibrio vulnificus. (A) Mass spectrophotometric determination of the percent BK present after PGI-LysAP digestion of Lys-BK with 1,000 units of PGI-LysAP for up to 2 h at 37°C. Bradykinin is represented by the ion intensity of product detected at m/z 1,060. Each point represents the mean of six readings ± standard deviation. (B) Graph showing the release of free lysine from 100 µg of Lys-BK after digestion at 37°C with 1,000 units of PGI-LysAP for up to 2 h as determined using a fluorescent ninhydrin assay. Each point represents the mean of eight readings ± standard deviation. (C) Results from SDS-PAGE of 50 µg of Lys-BK and its cleavage products on a Tricine gel after digestion at 37°C with 1,000 units of PGI-LysAP for various periods. The negative control (NC) lane was inoculated with enzyme but no substrate, while the positive control (PC) lane was inoculated with substrate but no enzyme.
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Comparative analysis of enzyme specificity. In a previous study using synthetic peptidyl substrates covalently bound to AMC, we showed that PGI from V. vulnificus preferentially cleaved Lys residues (30). The relative cleavage preferences were as follows: 100% for L-Lys, 19% for L-Arg, and 10% and 4% for cleavage on the carboxyl side of Z-Phe-Pro-Arg and Z-Phe-Arg, respectively (30). There was no cleavage on the carboxyl side of the lysyl residues in D-Val-Leu-Lys-, D-Ala-Leu-Lys-, and Z-Ala-Ala-Lys-AMC. Consequently, we named PGI with this strong lysyl aminopeptidase activity PGI-LysAP. In the present study, we demonstrated by mass spectrometry that PGI-LysAP serves as an exopeptidase, cleaving not only Lys residues but also Arg, His, Ala, and Phe from the amino-terminal ends of human peptides and Met and Lys residues as a unit from Met-Lys-BK. Together, the results indicate that PGI-LysAP is a lysyl aminopeptidase but has relatively broad exopeptidase activity.
Kinin activation of signal transduction pathways. Bacterial proteases have been well documented to serve as universal triggers of kinin generation, which, in turn, enhances vascular permeability and inflammatory events associated with microbial infections (16-18, 20, 22). We clearly demonstrated the processing of kinins by PGI-LysAP cleavage of Lys-BK and Met-Lys-BK. Bradykinin-related peptides are well known for binding to two G protein-coupled, seven-transmembrane, helical receptors known as the B1 and B2 receptors (2, 5, 27). These receptors are on the surface of a variety of cell types, where they trigger signal transduction events leading to a host of physiological responses (2, 5, 27). Proteolytic processing of BK alters the affinity of the ligand and its receptor. Bradykinin generated as a result of bacterial infections induces pain, edema, vasodilation, hypotension, and shock (16, 20). Bradykinins have also been shown to enhance the invasiveness of V. vulnificus by facilitating the transvascular translocation of the bacterium (17, 19, 21). The extent of peptide processing by PGI-LysAP is likely related to the amount of enzyme present, the duration of contact with the enzyme, the temperature and pH of the reaction, and other physiological conditions; therefore, the digestion products detected in this study may represent only a small sampling of those actually produced in an infected individual. The extent of PGI-LysAP's proteolytic cleavage may be limited to the amino-terminal lysyl residue for transient peptides in the general circulation, since they may be in only brief contact with the enzyme, which is on the surface of the vibrios (30). Localized and more-focused proteolytic processing of peptides would be expected in tissues infected by V. vulnificus. Tissue involvement leads to necrotizing fasciitis, the appearance of bullous skin lesions, and general inflammatory reactionsconditions common to V. vulnificus infection.
Neurokinin A is a tachykinin with broad tissue distribution and function (26, 33, 36). In skin and immune cells, neurokinin A exerts a physiological role in modulating cell proliferation, cytokine production, antigen presentation, and inflammation of the epidermal and dermal layers (32). Tachykinins in general are substantially involved in inflammatory reactions (3, 10, 32), vasodilation (6, 27), and the regulation of local blood flow (6). Wallengren (36) found high levels of neuropeptides in bullae associated with inflammatory skin disorders.
Currently, three G protein-coupled receptors are recognized for the tachykinins: neurokinin (NK)-1, NK-2, and NK-3 (28). Neurokinin A is a decapeptide with high affinity for NK-2 receptors that are present on the surface of many cells where ligand-receptor binding elicits second messenger signaling cascades (1). Other tachykinins, such as substance P, preferentially bind to receptor NK-1, while neurokinin B has strong affinity for NK-3 (28). In the present study, we observed the sequential cleavage of amino-terminal His and Lys from neurokinin A (Table 2). Neurokinin-degrading enzymes are known to participate in the modulation of skin inflammation, wound healing, and skin immune responses (32). Residues constituting the C-terminal hexapeptide are essential for receptor binding (28). Regoli et al. (28) demonstrated that for rabbit pulmonary artery and rat portal vein, tissues that have high sensitivity, selectivity, and specificity for binding neurokinin A, the binding of neurokinin A to NK-2 receptors doubled with the removal of the first three amino-terminal residues. Our studies demonstrated that PGI-LysAP cleaved at least two amino-terminal residues from neurokinin A, which would likely alter the affinity of human neurokinin A to NK-2 receptors but would not disrupt the essential C-terminal hexapeptide sequence required for receptor binding (28). Clearly, PGI-LysAP's proteolytic processing of neurokinin A may enhance receptor binding and elicit inflammatory and vasodilatory reactions, which would help explain the symptoms of vibriosis and provide clues to explain the rapid invasiveness of V. vulnificus. A better understanding of the mechanisms of receptor binding by peptides and their proteolytic digests is crucial to unraveling the mysteries of bacterial invasiveness.
Processing of histatin 8 and myosin light chain kinase. The enzymatic cleavage of lysine from histatin 8 and from a myosin light chain kinase fragment was also evident (Table 2). Histatins are salivary peptides known for their antimicrobial properties (11, 35). The hydrolysis and possible inactivation of histatin 8 by Vibrio PGI-LysAP may be a bacterial defense mechanism unique to Vibrionaceae family members. The myosin light chain fragment is a peptide analog consisting of residues 11 to 23 from the amino-terminal end of the myosin light chain. This region is an effective substrate for smooth muscle myosin light chain kinase and was shown to inhibit the phosphorylation of the calmodulin-binding region (12, 13). As previously mentioned, the myosin light chain fragment produced the greatest amount of free lysine (Table 3) due to the release of the two amino-terminal lysyl residues. This peptide was also sequentially cleaved five times (Table 2), demonstrating the extent to which PGI-LysAP can serve as a hydrolytic enzyme.
Other virulence enhancers are required for V. vulnificus infection. In a survey for PGI-LysAP in other members of the Vibrionaceae family and in non-Vibrionaceae bacterial pathogens, we detected PGI-LysAP in all 11 species of Vibrionaceae examined but not in any of 14 non-Vibrionaceae pathogens (31). We also detected PGI-LysAP in strains of virulent and avirulent V. vulnificus, which were determined as such by mouse 50% lethal dose assays (30). The presence of PGI-LysAP in all Vibrionaceae family members, whether human pathogens or not, suggests that other virulence enhancers or predisposing conditions must be present for V. vulnificus to infect an individual via the gastrointestinal route. Some of the putative virulence factors that have been identified over the years using cell culture and animal models (7) may indeed be required for Vibrio to gain entry via the gastrointestinal route and to permit the bacterium to evade host defenses. Vibrios that are introduced through wound infections could forgo the need for certain virulence factors, since their introduction into the tissues or bloodstream is achieved through physical means (trauma) rather than by biological actions. This may explain why healthy individuals are susceptible to V. vulnificus wound infections but not to infection through the gastrointestinal route.
Cellular complexities in understanding virulence mechanisms. Within the extracellular milieu of mammalian systems are countless proteins, peptides, and degradation products which have important biological functions in the normal physiology of the individual cell as well as in the entire organism. Disruption of the normal metabolism of proteins and peptides by invading bacteria and their enzymes alters the levels of these compounds, affecting the biological, chemical, mechanical, and structural integrity of the organism. Sorting out the complex interactions between proteins and peptides, their catabolytes and inhibitors, and potential cellular receptors represents a daunting task. Through the enzymatic alteration of bradykinin and related peptides, this study demonstrates a few of the many potential virulence mechanisms that may be available to enhance bacterial invasiveness. As we gain insights into the functions of proteolytic enzymes in bacterial infections, it seems likely that new, non-antibiotic-related interventions directed toward blocking the enzymes' activities or the development of new receptor antagonists may provide the key for preventing or controlling morbidity and mortality from V. vulnificus and other pathogens.
Mention of trade names or commercial products in this article is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the U.S. Department of Agriculture.
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