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Journal of Bacteriology, April 2006, p. 2586-2592, Vol. 188, No. 7
0021-9193/06/$08.00+0 doi:10.1128/JB.188.7.2586-2592.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Department of Microbiology,1 Department of Botany and Plant Pathology,2 Department of Crop and Soil Science, Oregon State University, Corvallis, Oregon3
Received 6 December 2005/ Accepted 23 January 2006
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Recent work from our laboratory has shown that genes coding for a broad-substrate-range alkane monooxygenase, commonly referred to as butane monooxygenase (BMO), are responsible for the ability of Pseudomonas butanovora to grow on alkanes C2 to C9 (29). The region immediately 5' of the BMO operon in P. butanovora contains a putative sigma 54-dependent promoter (29). Sigma 54-dependent promoters are subject to positive control mediated by enhancer-binding proteins, which facilitate transcriptional initiation (5, 6, 25). Unlike the alkane-responsive system regulating monooxygenase expression in P. putida GPo1, the transcriptional activity of the BMO promoter in P. butanovora is up-regulated in response to the products of monooxygenase activity, butyraldehyde and 1-butanol. In contrast, neither the substrate, butane, nor the immediate downstream product of butyraldehyde oxidation, butyric acid, was found to be an inducer (11, 28). A constitutive albeit low level of BMO activity allows cells to respond to alkanes by transforming them into products which then induce higher levels of BMO (28).
In this paper, we describe an additional feature of the regulation of alkane catabolism in P. butanovora whereby BMO expression is repressed in situations in which propionic acid accumulates because of the oxidation of odd-chain-length alkanes by cells growing on even-chain-length alkanes and actively expressing BMO activity. Our results are discussed in the context of a hypothetical model of BMO regulation that bears some resemblance to the classical regulatory model controlling fatty acid oxidation and lipid biosynthesis in bacteria (9, 26, 33, 36).
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When alkanes served as growth substrates, 2 mmol (approximately 200 µM aqueous concentration) of the respective alkane was added to each vial. When lactate, acetate, propionate, butyrate, or pentanoate served as the C source for growth, acid concentrations were balanced to 12 mM carbon equivalents (4, 6, 4, 3, or 2.4 mM, respectively), sufficient to support growth of P. butanovora to an optical density at 600 nm (OD600) of approximately 0.8. The induction of BMO activity was carried out under the same conditions used to grow the cells, except that the concentrations of alkanes varied as indicated in the figures. Concentrations of alkanes in the aqueous phase were assumed to follow their unitless Henry's constants. Lactate-grown, BMO-repressed cells were harvested by centrifugation (6,000 rpm for 10 min), washed three times, and resuspended in fresh growth medium with phosphate buffer. Induction assays were performed in 750-ml flasks containing 150-ml cell suspensions at an OD600 of 0.3. The indicated amount of alkane was added as overpressure to the headspace of the vial except for pentane, which was added as a liquid to the vial using a glass syringe. Induction vials were shaken at 200 rpm on an orbital shaker at 30°C. Cells were removed at time intervals, washed in phosphate buffer, and tested for BMO activity as described above.
Measuring propionate consumption and production by P. butanovora grown on alkanes of various chain lengths. To measure consumption, cells were grown on the indicated substrate, harvested, washed three times, and resuspended in phosphate buffer to 1 mg protein · ml1. Reaction vials (10 ml) contained 1 ml of the concentrated cell suspension and 1 mM propionate. Two separate experiments were carried out to measure propionate production by P. butanovora. (i) Cells were grown on either ethane, propane, butane, pentane, or lactate, harvested, and suspended in vials as described above. Either propane (0.2 mM), 1-propanol (2 mM), or propionaldehyde (2 mM) was added to the vials. Concentrations of substrates were chosen that supported optimal rates of propionate production. (ii) The sensitivity of propane-dependent propionate production to the presence of butane was determined by harvesting and resuspending butane-grown cells as described above and adding to the vials various ratios of propane to butane. Concentrations of propane were 200, 300, or 400 µM in solution, while the concentration of butane ranged from 10 to 200 µM.
Vials were capped with butyl rubber stoppers, placed in a 30°C water bath shaker, and shaken at 150 rpm. Propionate was detected by injecting 1-µl samples of the cell suspension into a Shimadzu GC-8A gas chromatograph equipped with a flame ionization detector and a 50-cm Porapak Q column (Alltech Associates, Inc.). Column temperature was maintained at 160°C and the detector and injector at 200°C.
Determination of induction and repression of ß-galactosidase expression in the lacZ transcriptional reporter strain.
P. butanovora strain bmoX::lacZ::kan contains a bicistronic expression system in which kanamycin resistance is constitutive and the BMO promoter controls ß-galactosidase (lacZ) expression (28). The lacZ reporter strain was unable to grow on any of the alkanes tested (C2 to C9), indicating that the BMO enzyme is essential for the metabolism of all alkanes that are growth substrates for P. butanovora. The lacZ reporter strain was grown on organic acids under the same conditions as those described for the wild-type cells. Inductions were performed in 10-ml vials with 1-ml cell suspensions (an OD600 of
0.5). The incubation time was 2 h for all lacZ assays, and the concentrations of putative inducers ranged from 10 µM to 5 mM as indicated in Results. 1,2-trans-Dichloroethene (1,2-trans-DCE) (100 µM) was used as a gratuitous inducer of the reporter system as described previously (11). ß-Galactosidase activity was determined at the end of the induction period as previously described (11, 28).
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160 nmol ethane oxide · min1 · mg protein1), the up-regulation of BMO activity in lactate-grown, BMO-repressed cells was consistently delayed in propane-exposed cells relative to butane-exposed cells (Fig. 1A). Furthermore, when lactate-grown cells were exposed to butane and propane simultaneously, the presence of propane reduced the ability of butane to induce BMO activity (Fig. 1B), indicating that the lag in BMO induction during exposure to propane is due to repression by propane rather than to its inability to induce BMO. The repressive behavior of propane was extended to other odd-chain alkanes when it was shown that butane induction of BMO activity could be aborted by the addition of either propane (C3) or pentane (C5) to cultures already actively inducing BMO activity (Fig. 1C). The increase in BMO activity was unaffected by the addition of ethane or more butane. These data indicate that propane and pentane were capable of suppressing BMO activity in P. butanovora, despite their ability to promote BMO activity when provided as sole growth substrates. Since we already knew that products of butane oxidation induced BMO expression, we explored the possibility that the products of alkane oxidation could also act as repressors of BMO expression.
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FIG. 1. The effects of various alkanes on the induction of BMO activity in lactate-grown P. butanovora. The y axis values represent BMO-specific activity as measured by the ethene oxide (EtO) assay (ethene oxide · min1 · mg protein1). Results of the independently conducted experiments are as follows. (A) Time course of butane ( )- and propane ( )-dependent induction of BMO activity from lactate-grown P. butanovora. (B) Induction of BMO activity following 2 h of incubation with either 224 µM butane (B1), 112 µM butane (B2), 328 µM propane (P), or a mixture of 112 µM butane and 164 µM propane (B+P). (C) Time course of the effect of ethane, propane, and pentane on butane-dependent induction. At time zero, vials containing lactate-grown cells received either 1 mmol butane (white symbols) or no n-alkane (). At the time indicated by the arrow, vials received no additional n-alkane ( ) or 2 mmol of either ethane (x), propane ( ), butane ( ), or pentane ( ).
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TABLE 1. Effects of propane, oxidation products, and putative downstream metabolites on 1-butanol- or 1,2-trans-DCE- dependent induction of ß-galactosidase activity in the lactate-grown reporter strain
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FIG. 2. Propane ( )-, 1-propanol ( )-, and propionaldehyde ( )-dependent propionate production by ethane (A)-, butane (B)-, propane (C)-, pentane (D)-, and lactate (E)-grown P. butanovora. Data points are the means of three replicates, and error bars represent standard deviations of the means.
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FIG. 3. Kinetics of propane-dependent propionate production by butane-grown P. butanovora in the presence of mixtures of propane and butane. Concentrations of propane were 200 ( ), 300 ( ), or 400 ( ) µM in solution, while the concentration of butane ranged from 10 to 200 µM. The arrow indicates the ratio of butane to propane that was used in the experiment described in Fig. 1C.
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Induction of propionate consumption in P. butanovora. The pathway of propionate metabolism could be induced in P. butanovora. Although propionate accumulation initially occurred at a high rate when propionaldehyde was added to lactate- or butane-grown cells, net propionate consumption commenced within 2 h of exposure to propionaldehyde (data not shown). Furthermore, propane- or pentane-grown cells consumed propionate immediately upon the addition of propionate. Indeed, the rate of propionate consumption is about 10 times faster in cells grown on propane or pentane than in cells grown on lactate, ethane, or butane (Table 2). The rate of propionate utilization by the odd-chain-length alkane-grown cells is consistent with previously published estimates of alkane consumption by P. butanovora, indicating that a fully induced, propionate-utilizing pathway has sufficient capacity to consume organic acids produced by BMO activity.
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TABLE 2. Specific rates of propionate consumption by P. butanovora grown on various C sources
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TABLE 3. Effects of propane, oxidation products, and putative downstream metabolites on the induction of ß-galactosidase activity in the propionate-grown lacZ reporter strain
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FIG. 4. Effect of (A) acetate, (B) butyrate, (C) propionate, and (D) pentanoate as growth substrates on the effectivity of various-chain-length primary alcohols (C2 to C8) as inducers of ß-galactosidase from the BMO promoter in the lacZ reporter strain. Cells were exposed to the specific alcohols for 2 h, and ß-galactosidase activity was measured as described in Materials and Methods. Data points are the means of three replicates, and error bars represent standard deviations of the means.
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At this time, we know very little about the identity of the pathway of propionate metabolism in P. butanovora and nothing about its regulation. Genes have been identified on a 30-kb fragment of DNA that show close homology to propionyl coenzyme A (propionyl-CoA) carboxylase subunits and to methylmalonyl-CoA mutase subunits (our unpublished observations). If these genes produce active protein products, then it seems reasonable to infer that propionate utilization in P. butanovora proceeds via methylmalonyl-CoA and succinyl-CoA into the TCA cycle. One interesting difference between the methylmalonyl pathway of propionate consumption (23) and the alternative 2-methylcitrate cycle of propionate consumption (20, 21) is the ability of the former to substitute for the glyoxylate shunt of the TCA cycle through the net generation of succinate rather than pyruvate (3, 4, 15, 22, 23). Mutation of isocitrate lyase in P. putida GPo1 resulted in a strain that could use odd- but not even-chain-length alkanes and provided evidence that propionyl-CoA, generated during the consumption of odd-chain-length alkanes in P. putida GPo1, is incorporated into the TCA cycle via the methylmalonyl-CoA pathway (18). Similarly, the expression of isocitrate lyase activity in propane-grown Mycobacterium vaccae JOB5 led to the conclusion that propane was not metabolized via the methylmalonyl-CoA pathway (8, 23). Further studies showed that propane was oxidized to 2-propanol and subsequently oxidized to acetone by M. vaccae JOB5 (2, 8, 23). In this case, propionate is not an intermediate of propane metabolism in M. vaccae JOB5, and it is not known whether the negative effect of propane on butane metabolism would occur in M. vaccae JOB5 or other alkane-utilizing bacteria for that matter.
The observation of fatty acid repression of BMO ties in well with the recent discovery that BMO expression is also a product induced by 1-butanol and butyraldehyde (28). There is an advantage to product induction of broad-substrate-range monooxygenases that might otherwise be inappropriately up-regulated by compounds that are not growth substrates. The downside of a product induction strategy is, however, that the combination of a broad-substrate-range monooxygenase with broad-range alcohol and aldehyde dehydrogenases might produce an effective BMO inducer, yet give rise to a carboxylic acid that cannot be metabolized further. In this situation, it would be exceedingly important to have a second layer of control over the BMO operon to prevent the cell from exhausting its reductant supply and accumulating a product that might cause cytotoxic damage. In this context, the repression of BMO could serve a dual function by preventing BMO expression either in response to the accumulation of nonmetabolizable organic acids or in response to organic acids that are preferred C sources. Indeed, researchers have previously observed the repression of alkane monooxygenase enzymes in response to the products of alkane oxidation (16, 17, 24). For example, myristic acid (C14), a potential product of tetradecane metabolism in Burkholderia cepacia RR10, was shown to repress the expression of alkane hydroxylase (16). It was speculated that repression could prevent the overloading of ß-oxidation during long-chain n-alkane consumption.
It is difficult to reconcile our observations of propionate-dependent repression of BMO with the existing model of catabolite repression of the alkane hydroxylase of P. putida GPo1. Exponential growth on LB medium is required for Crc-mediated repression of the alkane hydroxylase of P. putida GPo1; however, upon entry into stationary phase, the alkane hydroxylase may be expressed even in the presence of preferred C sources (10, 37, 38). Similarly, lactate-dependent repression of alkane hydroxylase is released in cytochrome o ubiquinol oxidase-negative mutants of P. putida GPo1 while growth on lactate remains unaffected. These data suggest that the repressive signal generated by the oxidative consumption of lactate was dependent on the metabolic route of electrons through the electron transport chain (10). In contrast, BMO was repressed by propionate before the pathway of propionate metabolism was induced, indicating that the cells need not grow at the expense of propionate to trigger propionate-dependent repression of BMO. Because ß-oxidation of fatty acids is likely linked to growth of P. butanovora on alkanes, it is interesting to speculate on coordinated regulation of fatty acid degradation by ß-oxidation and fatty acid synthesis via alkane oxidation and how this might have some similarity with the mechanism whereby a bacterium coordinates fatty acid catabolism by ß-oxidation with anabolism in lipid biosynthesis (9). We propose a model of BMO regulation in which the first step of alkane oxidation can be considered a reductant sink analogous to steps in the lipid synthesis pathway. The global transcriptional regulator, FadR, belongs to the GntR family of transcriptional regulators and controls the expression of the enzymes responsible for fatty acid synthesis and degradation as well as some alcohol dehydrogenase activities in Escherichia coli (7, 9, 33, 36). When FadR is not associated with acyl-CoAs, it forms complexes with specific sequences of DNA that (i) promote transcription of fatty acid synthesis genes (fab) and (ii) prevent transcription of genes in ß-oxidation (fad) (9). When fatty acids are in excess, long-chain acyl-CoAs accumulate transiently in the cell, bind to FadR, and cause it to disassociate from DNA. This results in down-regulation of fab genes and up-regulation of fad genes. Similarly, we propose that the buildup of propionate will lead to the accumulation of propionyl-CoA. If a form of FadR exists with the capacity to bind short-chain-length acyl-CoAs, then this could extend the role of FadR-like proteins to BMO regulation. Although Rigali et al. (26) have shown that FadR homologs of diverse bacteria vary considerably in their abilities to bind acyl-CoAs of different chain lengths, there are no current models for the global regulation of fatty acid synthesis and degradation in bacteria that either are phylogenetically closely related to P. butanovora or carry out alkane oxidation. There is precedent, however, for the GntR family of transcriptional regulators to be involved in the transcriptional regulation of aromatic hydrocarbon-degrading pathways (19, 26, 32).
Although it is intriguing to speculate on the existence of a FadR-like fatty acid-responsive regulator associated with the BMO promoter region that interacts with acyl-CoAs and which could provide a molecular mechanism that coregulates expression of BMO, propionate consumption, and ß-oxidation, several different growth scenarios require different responses from BMO and ß-oxidation. For example, both ß-oxidation and BMO activity need down-regulating during growth on propionate and up-regulating during growth on C4+ alkanes. On the other hand, growth on propane requires up-regulation of BMO and down-regulation of ß-oxidation, whereas growth on butyrate requires the opposite response. Obviously, more research is required to gain a better understanding of how regulation of broad-substrate-range enzyme systems is networked into the sophisticated regulation associated with basic cell metabolism.
We also thank Kate Bateman for assistance in obtaining the propionate production data.
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54 (
N) transcription factor. J. Bacteriol. 182:4129-4136.
54-dependent genes in Escherichia coli. Microbiol. Mol. Biol. Rev. 65:422-444.This article has been cited by other articles:
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