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Journal of Bacteriology, September 2007, p. 6676-6685, Vol. 189, No. 18
0021-9193/07/$08.00+0 doi:10.1128/JB.00407-07
Copyright © 2007, American Society for Microbiology. All Rights Reserved.
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and
Michael Koomey1,2
Centre for Molecular Biology and Neuroscience,1 Department of Molecular Biosciences, University of Oslo, 0316 Oslo, Norway,2 Department of Microbiology and Immunology, University of North Carolina School of Medicine, Chapel Hill, North Carolina 27599,3 Department of Infectious Diseases and Immunology, Utrecht University, NL-3584 CL, Utrecht, The Netherlands,4 Department of Biological Sciences, Columbia University, New York, New York 100275
Received 20 March 2007/ Accepted 6 June 2007
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Strains expressing heterologous pilin subunits provide unique opportunities to examine relationships between TFP, accessory factors, and associated phenotypes. The latter include colonization of biotic and abiotic surfaces, motility across solid surfaces, multicellularity, and susceptibility to bacteriophage infection, as well as horizontal gene transfer via transformation and conjugation. However, these phenotypes are not universally seen in TFP-expressing species. This may reflect constraints associated with structural features unique to particular pilin subunits or the requirement for ancillary factors that act in concert with an intact TFP biogenesis pathway to impart function. TFP pilin subunits from PAK and PAO strains of P. aeruginosa pilin have been shown to complement pilin-null mutants of Pseudomonas stutzeri in DNA uptake required for transformation (16), as does the P. aeruginosa PAK pilin subunit when expressed in N. gonorrhoeae (2). It is important to note that competence for natural transformation has not been documented in P. aeruginosa strains. Since DNA uptake in both these backgrounds requires an intact TFP biogenesis pathway and a pilin subunit capable of being assembled, it is presumed that heterologous pili are expressed in these cases, but this has yet to be demonstrated. Heterospecific complementation of type II secretion defects likewise suggest that PulG type pseudopilins function by virtue of their abilities to oligomerize into pseudopilus polymers (10, 36). In both the TFP-associated competence and secretion systems, functionality is not attributable to the unique structural features of individual pilins but rather correlates best with the assembly proficiencies of the subunits.
Numerous bacteriophages utilize pili as a primary receptor to infect cells. Infection here involves binding of phage particles to the sides or tip of the pilus and retraction of the pilus, which brings the phage into contact with a second, cell surface-associated receptor. Phage components governing the molecular recognition of pili have been well defined in a number of systems. For example, minor coat proteins of the g3p family act as pilus receptors in many filamentous phages (8, 18, 19). The structural features and components of pili that participate in these interactions have yet to be defined in any system. With regard to TFP-bacteriophage systems, strain P. aeruginosa PAK and the pilus-dependent bacteriophage PO4 have been utilized extensively. In these studies, the expression of a remarkably diverse group of exogenous TFP pilin subunits in P. aeruginosa PAK backgrounds (lacking endogenous pilin-pilA) has been reported to restore twitching motility (indicative of pilus retraction) and productive PO4 infection (29, 37). Similarly, three distinct pilin genes were reported to restore PO4 sensitivity in a pilA strain of P. stutzeri (16). Based on the reported relaxed specificity of PO4 phage vis-á-vis subunit composition, some have surmised that a "minor" pilus associated protein might actually be serving as the primary receptor (29). Alternatively, PO4 phage might recognize a degenerate motif widely distributed in TFP polymers or pilin subunits. To further cloud this issue, one study reported that P. aeruginosa strain PAO is readily susceptible to PO4 (5), while another concluded that strain PAO only became PO4 sensitive when complemented by the PAK pilin gene (37). The molecular contribution of TFP to phage binding and recognition in P. aeruginosa, or for that matter in any TFP-expressing species, thus remain a matter of controversy.
Another issue of interest in TFP biology relates to the mechanisms by which pili promote adherence to mammalian tissue. TFP-mediated adherence of N. gonorrhoeae to human epithelial cells requires the coordinated expression of PilC, which has intrinsic adhesin properties, and six pilin-like proteins that appear to impact on adherence by influencing PilC activity or trafficking (39, 40, 42). Each of these proteins copurify with TFP, and all but the PilV pilin-like protein impact on TFP dynamics by promoting extension and/or polymerization events in the presence of the PilT pilus retraction ATPase. In contrast, TFP-mediated epithelial cell adherence exhibited by P. aeruginosa PAK is thought to require a receptor-binding domain located within residues 128 to 144 of the C-terminal region of the PilA pilin subunit itself (21). This receptor-binding domain is only exposed at the tip of the pilus (23). To date, no study has directly examined adherence phenotypes related to heterologous expression of PilA as TFP.
In an effort to delineate the potential contributions of pilin subunit structure and chemistry to TFP-associated phenotypes, we undertook a systematic assessment of phenotypes imparted by the expression of P. aeruginosa PilAPAK pilin in N. gonorrhoeae.
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TABLE 1. Bacterial strains considered in this study
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TFP retraction assay. For retraction experiments, 3-µm silica beads (Polysciences) were coated with poly-L-lysine and adsorbed to glass coverslides by centrifugation. Then, 2-µm carboxylated latex beads (Polysciences) were added without further treatment to a suspension of gonococci, which were then mounted on a microscope slide and sealed. The optical tweezers system, including calibration methods and the determination of the velocity-versus-force curve, has been described previously (25).
Epithelial cell bacterial adherence. Primary cultures of human corneal epithelial cells were established (35), and adherence assays of gonococcal strains to the human corneal epithelial cells were performed as described previously (39).
Pilus purification. Pili were purified by the ammonium sulfate procedure as previously described (41) except that the bacterial cells were collected from two heavily streaked petri dishes and suspended in 1 ml of 0.15 M ethanolamine (pH 10.5) and the centrifugation time lengths were reduced to 5 min.
SDS-PAGE, immunoblotting, and staining. Procedures for sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), immunoblotting, and Coomassie blue staining have been described previously (15), and silver staining SDS-PAGE analyses were performed according to standard techniques. PilA, PilE, PilC, and PilV were detected by immunoblotting of pilus preparations and whole-cell lysates using specific rabbit polyclonal antibodies and alkaline phosphatase-coupled goat anti-rabbit antibodies (Tago). The PilA-specific sera was a gift from E. Gotschlich (Rockefeller University), and the PilC-specific sera was a gift from A.-B. Jonsson (Uppsala University). The PilV- and PilE-specific sera were described previously (1, 39).
Immunofluorescence microscopy. Immunofluorescence microscopy was performed as described previously (40), except that the gonococcal strains were grown up to an optical density at 550 nm of 0.2 before they were fixed on poly-L-lysine-coated glass coverslips. The gonococcal pili were labeled using rabbit serum raised against purified TFP from strain N400 (9), and the PAK pili were labeled with PilA-specific antiserum. The images shown correspond to fields that are representative of the overall observations.
Immunogold and transmission electron microscopy. Sample grids were prepared by touching carbon-coated Formvar copper grids to individual bacterial colonies grown on GC agar (18 h, 37°C, 5% CO2) and fixed with 0.5% glutaraldehyde in phosphate-buffered saline (PBS; pH 7.4) for 5 min. Grids were washed three times on drops of PBS and subsequently negatively stained with 0.5% ammonium molybdate in water for 5 min before being viewed in a Philips CM100 transmission electron microscope. For immunogold labeling the grids with fixed bacteria were first blocked with 0.5% newborn calf serum and then incubated with rabbit anti-pilin PilA-specific antibody (dilution, 1:500) for 10 min at room temperature. After four washes on drops of PBS, the grids were incubated with gold-conjugated protein A (5 nm). After three rinses on drops of PBS, followed by three rinses on drops of water, the grids were stained 4 min with uranyl acetate. The same procedure was repeated using rabbit antisera specific for PilE: lots 2-66 and 904 (dilution 1:100), lot T36 (1:10), and lot T40 (1:20). The T36 and T40 antibodies have been reported to specifically recognize epitopes exposed at the tips of the PilE pilus structure (14). PilE 904 antibodies were made against purified N. gonorrhoeae pilin subunit from the strain N400.
For the double immunogold labeling the grids with N. gonorrhoeae were incubated with PilA-specific antisera (dilution 1:400 for 30 min), rinsed three times for 5 min each time on drops of PBS before incubation with gold-conjugated Protein A (10 nm gold for 30 min). The grids were washed three times for 5 min each time on drops of PBS and then blocked by incubation on free protein A for 15 min and rinsed three times for 5 min each time on drops of PBS before being incubated with the rabbit anti-PilE specific antibodies (dilution 1:400) for 30 min at room temperature. This was followed by three washes of 5 min each with PBS and incubation with gold-conjugated protein A (5-nm gold for 30 min) before rinsing three times for 5 min each time on drops of PBS, followed by two 5-min washes on drops of distilled water. Finally, the grids were stained for 10 min with 2% uranyl acetate. The procedure was repeated by changing the PilE- and PilA-specific antiserum incubation steps. As an experimental control to exclude the possibility of cross-reactivity, the incubation step with the second primary antibody was replaced with incubation on drops of PBS.
Interactions of phage PO4 with TFP. Standard methods were used for phage PO4 preparation and phage titration (5, 6). Electron microscopy was used to study PO4 virions absorbed to N. gonorrhoeae cells by a method derived from (4). N. gonorrhoeae cells grown overnight on GC plates (37°C, 5% CO2) were resuspended in GC broth to 2 x 108 cells/ml and mixed with an equal volume of phage PO4 at 6 x 109 PFU/ml. After gentle shaking at 37°C for 10 min, bacteria were subjected to immunogold labeling and negatively stained for electron microscopy.
Sample preparation for intact protein MS. Isolated PilA protein was rinsed and washed by a methanol-chloroform precipitation procedure described previously (38). Briefly, 100 µl of the aqueous PilA solution at 2 to 3 mg/ml protein was diluted 1:3 (vol/vol) with methanol and mixed briefly. Both 100 µl of CHCl3 and 200 µl of water were added consecutively, and this was followed each time by a mixing step. Phase separation was achieved by centrifugation (4,000 x g, for 8 min), yielding precipitated PilA at the interface. The upper methanol-water phase was removed, and 400 µl of methanol was added. After mixing, the pellet was recovered by centrifugation (13,000 x g, 8 min). The pellet was dried for 5 min in the inverted tube before the sample was dissolved in 50 µl of water, 70% formic acid, and acetonitrile (3:1:3 [vol/vol/vol]). Samples were subjected immediately to mass spectrometric (MS) analyses or frozen at –80°C.
Infusional MS analysis of intact protein. All data were acquired on a quadrupole time-of-flight mass spectrometer (Q-Tof Micro; Micromass, Manchester, United Kingdom) equipped with the standard z-spray electrospray ionization (ESI) source. Sample solutions were infused into the ESI source at a flow rate of 5 µl/min by using a syringe pump (SP 100i; Cole-Parmer Instrument Company, Vernon Hills, IL). The source block temperature was maintained at 80°C. Nitrogen was used as both desolvation and nebulizing gas with flow rates of 300 and 20 liters/h, respectively. MS analyses were performed in the electrospray positive mode with the following parameter settings (parameter names as used in the MassLynx NT software, version 3.5): capillary voltage, 3,000 V; sample cone voltage, 25 V; extraction cone voltage, 4.3 V; ion energy, 3 V; and collision energy, 10 eV. The MS resolution was typically 4,000. The MS survey was obtained in a mass range from 150 to 1,700 m/z. Mass calibration in a mass range of 100 to 2200 m/z was performed using the ES tune mix solution from Agilent (Agilent, Palo Alto, CA). The MS spectra were analyzed by using the MassLynx software (version 3.5). For deconvolution, spectra were processed with the MaxEnt1 program of the MassLynx software.
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FIG. 1. Characterization of PilE and PilA expression in N. gonorrhoeae using whole cells lysates and purified pili. (A, D, and E) Silver-stained (A and E) or Coomassie blue-stained (D) SDS-PAGE gels loaded with either whole-cell lysates (A) or purified pili (E and D). (B, C, F, and G) Immunoblotting of whole-cell lysates (B and C) or purified pili (F and G) by using anti-PilE-specific antibodies (B and F) or anti-PilA-specific antibodies (C and G). Lanes: 1, N401 (wild type); 2, KS48 (iga::pilA); 3, KS49 (iga::pilA pilT); 4, MW24 (pilE); 5, KS50 (pilE iga::pilA); 6, KS51 (pilE iga::pilA pilT). Note that the polyclonal antibodies to PilA cross-react with PilE due to a shared epitope encompassed within the highly conserved amino termini of the proteins (28).
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FIG. 2. TFP characterization in gonococcal strains using immunofluorescence. Gonococcal cells (green) and TFP (red) are detected using indirect immunofluorescence. Anti-PilE specific antibodies (2-66) were used in the two leftmost columns, while anti-PilA specific antibodies were used for the two rightmost columns. Wild-type (wt; N400), KS45 (pilE), KS48 (iga::pilA), KS49 (iga::pilA pilT), KS52 (iga::pilA pilE), and KS53 (iga::pilA pilE pilT) strains are all shown as labeled.
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FIG. 3. Piliation of wild-type and mutant gonococcal strains analyzed by immunogold labeling and transmission electron microscopy. (A and B) Negatively stained and 5-nm-immunogold-labeled TFP using anti-PilA specific antibodies. (C and D) Negatively stained and sequentially immunogold-labeled TFP fibers using anti-PilE specific antibodies (10-nm gold particles), followed by anti-PilA-specific antibodies (5-nm gold particles). (E and F) Negatively stained and sequentially immunogold labeled TFP using anti-PilA-specific antibodies (10-nm gold particles), followed by anti-PilE-specific antibodies (5-nm gold particles). The strain used was KS49 (iga::pilA pilT).
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FIG. 4. Evidence for a unique tip structure on P. aeruginosa TFP in N. gonorrhoeae. Negative staining and immunogold transmission electron microscopy using anti-PilA specific antibodies (5-nm gold particles). The lower left panel was only labeled with anti-PilA-specific antibodies and not with gold particles. Bar, 200 nm. Strains KS48 (iga::pilA), KS49 (iga::pilA pilT), KS52 (iga::pilA pilE), and KS53 (iga::pilA pilE pilT) are shown as marked.
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We next characterized the kinetics and force generation of PilAPAK pilus retraction using laser tweezers (Fig. 5). The method has been described previously (25). In short, single cells of N. gonorrhoeae were immobilized at the surface of a microscope cover slide. Subsequently, a 2-µm latex bead was trapped in the laser tweezers and placed in close vicinity of the bacterium. When a pilus bound to the bead and retracted, the displacement of the bead was used as a measure of pilus displacement as a function of time as a function of the optical restoring force acting on the bead. It was found that pili retracted at a frequency of 0.16 ± 0.03 retractions/s, i.e., on average, a pilus would bind to the bead and retract once in 6 ± 1 s. The retraction velocity was constant at v = 1,600 x 100 nm/s at forces below 40 pN. At forces of >40 pN the velocity decreased and the velocity was 270 ± 30 nm/s at 100 pN, i.e., the velocity decreased by a factor of
6 from 0 to 100 pN. Force-dependent elongation of pili was not observed with this strain.
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FIG. 5. TFP-associated force generation for strains expressing PilAPAK pili. Velocity-versus-force relationship for pilus retraction for N. gonorrhoeae expressing PilA pili KS52 (pilE iga::pilA).
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FIG. 6. Adherence of wild-type and mutant gonococcal strains to human corneal epithelial cells. (A) Adherent cells are stained with crystal violet. All panels are shown at the same level of magnification. Adherence was also quantitated by determining the average numbers of adherent bacteria per cell (see Table S1 in the supplemental material). (B) Indirect immunofluorescence on gonococcal TFP using rabbit antibodies specific for PilA, followed by Alexa red (594 nm)-conjugated goat anti-rabbit immunoglobulin G antibodies (red). Gonococci were detected using fluorescence-labeled monoclonal antibodies (green). Wild-type (wt; N400), KS45 (pilE), KS48 (iga::pilA), KS49 (iga::pilA pilT), KS52 (iga::pilA pilE), KS53 (iga::pilA pilE pilT), KS58 (iga::pilA pilC pilE pilT), and KS55 (iga::pilA pilE pilT pilV) strains are shown as marked.
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FIG. 7. Quantitative analysis of PilC and PilV in gonococcal strains. (A, B, D, and E) Immunoblot of purified pili (A and B) or whole-cell lysates (D and E) using rabbit antibodies specific for PilC (A and D) or PilV (B and E). (C) Coomassie blue-stained SDS-PAGE gel showing relative amounts of PilE and PilA in purified pili. Lanes: 1, KS46 (iga::pilE pilE); 2, KS53 (iga::pilA pilE pilT); 3, KS58 (pilT pilC2off iga::pilA pilE); 4, KS56 (pilT pilC2off); 5, MW7 (pilT pilC1 pilC2); 6, KS55 (pilT pilV iga::pilA pilE); 7, GV6 (pilT pilV); 8 KS47 (iga::pilE pilE pilT).
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FIG. 8. PilAPAK pilin is necessary and sufficient for bacteriophage PO4 binding to pili in N. gonorrhoeae. The bacteriophage PO4 binds tail first along PilA pili. Negative staining (A, B, and C) and immunogold transmission electron microscopy using anti-PilA specific antibodies (5-nm gold particles) (D and E) is depicted. Bar, 200 nm. The strain used was KS49 (iga::pilA pilT). PO4 does not bind to PilE pili (seen as unlabeled bundles in panel E).
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The requirement for PilC and PilV for PilAPAK pilin-mediated adherence was surprising given the prevailing dogma that P. aeruginosa TFP-mediated adherence to human epithelial cell requires a receptor-binding domain located within the C-terminal region of pilin (21). Clearly, adherence mediated by such an intrinsic domain is not manifest in the gonococcal background. The in vivo relevance of the PilA binding domain and its putative asialo-GM1 glycosphingolipid receptor (23) has recently been brought into question (13). Assuming that there is in fact an intrinsic PilA receptor-binding domain, we surmise that it is not properly exposed in the gonococcal background.
Our previous work documented the ability of PilAPAK pilin to complement DNA binding and uptake required for natural transformability (2). However, the frequency of transformation supported by PilA was only 2.5% of that seen in the wild-type background. Many studies have shown that strains expressing very low, steady levels of endogenous TFP (resulting from reduced levels of pilin expression or pilE alleles partially defective in assembly) retain high-level transformability, and such strains express far lower levels of TFP than those seen here for the PilAPAK pilin (1, 24, 30). The reduced activity of PilAPAK vis-á-vis transformation seems therefore unrelated to a quantitative defect in TFP expression. Rather, the data imply a degree of functional incompatibility between PilAPAK itself or PilAPAK TFP and other components involved in DNA binding and uptake. It is important to note here that overexpression of the pilin-like ComP protein enhanced DNA uptake and transformability over a 100-fold in this background, while no increase in the levels of TFP were seen (2). Thus, PilAPAK appears defective in supporting ComP function or a ComP-dependent pathway in a manner unrelated to its assembly proficiency.
In addition to the suboptimal human cell adherence and transformation phenotypes associated with PilAPAK, other findings suggest diminished compatibility between the exogenous pilin and endogenous machinery. Most notably, the levels of purifiable PilAPAK TFP were remarkably low in a wild-type background but in the absence of the PilT retraction ATPase were nearly equivalent to those of endogenous TFP. This PilT-mediated effect was specific for exogenous TFP since the levels of endogenous TFP expressed simultaneously were not similarly diminished. Thus, this phenomenon involved a specific rather than a general perturbation of TFP dynamics in the cell. Steady-state TFP levels are partly dictated by the relative frequencies of extension and/or polymerization event initiation versus the frequencies with which extension or polymerization events are terminated by retraction or disassembly (mediated by PilT) (40). It appears then that PilAPAK pilus assembly sites are disproportionately susceptible to attack by the PilT-associated retraction machinery. This phenotype is reminiscent of that seen in N. gonorrhoeae null mutants lacking so-called effectors of pilus homeostasis (40, 42, 43). These factors act by promoting extension or polymerization events in the presence of PilT and include PilC and all of the five pilin-like proteins encoded within the pilH-L locus. Therefore, we propose that PilAPAK may interact suboptimally with these resident effector proteins. Like PilC, the PilH, -I, -J, -K, and -L proteins are each required for both human cell adherence and transformation competence (40). Therefore, the disparate phenotypes seen in the PilAPAK background might also reflect a diminished functionality of these components.
Simultaneous expression of endogenous pilin and P. aeruginosa PilAPAK at identical levels revealed previously unseen interactions. First, PilA pili were demarcated by a tip structure whose presence was PilE dependent. The simplest explanation could be that this tip structure is comprised of components requiring PilE for localization to this site, but further studies are required to assess these possibilities. Whatever its nature, the presence of the tip element is not essential to TFP-associated functions. Second, PilE influenced the length distributions of PilAPAK pilus filaments seen by immunofluorescence, with a heterogeneous mixture of pilus lengths being seen in its presence and only long, single filaments being seen in its absence. This differential effect was only seen in the presence of PilT, suggesting that the action of PilE was in some way influenced by pilus retraction. In contrast, PilE had no effect on the levels of purifiable PilAPAK pili, which were profoundly reduced relative to those of endogenous TFP. These discordant results seen for PilAPAK TFP levels in wild-type backgrounds using the purification versus the direct immunodetection methods are difficult to reconcile. Obviously, the cultivation conditions are clearly different since TFP are purified from strains propagated on agar medium, whereas immunodetection required shorter times of propagation in liquid medium on coverslips. The use of poly-L-lysine-coated coverslips here might be a factor since TFP undergoing extension and retraction might be irreversibly trapped or captured externally so as to prevent retraction or otherwise distort organelle dynamics. By way of example, treatment of P. aeruginosa PAO1 with pilus-specific RNA phage has been demonstrated to stimulate pilus formation by an unknown mechanism (7).
With regard to twitching motility, our results were not unexpected since other studies have documented the ability of diverse pilin subunits to form TFP and support this property in P. aeruginosa. We showed here that replacement of PilE by PilAPAK does not significantly impact force generation by TFP retraction. Like pilus retraction with endogenous TFP (25), the velocity is constant at forces of <40 pN, and at higher forces the velocity decreases but pili were still able to retract against 100pN. However, the average retraction velocity at low forces was increased compared to the wild type. This observation suggests that the maximum force is likely determined by a molecular motor in or near the membrane and that the structure and/or composition of the pilin subunit may influence the speed of pilus retraction.
Despite the vast number of instances in which bacteriophages are known to initiate infection by adsorption to pili, the pilus component involved has yet to be unambiguously identified in any system. In the present study, we demonstrated that the expression of P. aeruginosa PilA as TFP in N. gonorrhoeae was both necessary and sufficient to engender binding of bacteriophage PO4. It follows then that a specific PO4 receptor is encompassed within PilA or within a PilA oligomer. Nonetheless, other species expressing pilin subunits structurally distinct from PilAPAK exhibit PO4 sensitivity (in a TFP-dependent fashion), and it has been reported that the expression of any one of diverse set of TFP pilin subunits in a P. aeruginosa PAK pilA background restored PO4 sensitivity (29, 37). It is formally possible then that in some strains either a functional redundancy of PO4 receptors exists or that PO4 exhibits relaxed specificity for TFP organelles in some (but not all) instances. It is perhaps worth noting here that some filamentous phages are able to infect F– E. coli at frequencies of ca. 10–6, and infectivity can be dramatically increased by treatment that perturbs the outer membrane (32). There is thus clear precedence for the ability to bypass the requirement for the primary pilus receptor, albeit with reduced frequency. Further studies examining the direct interactions between phage and TFP as detailed here and elsewhere (19) should help clarify these issues.
In summary, this systematic analysis of phenotypes imparted by heterologous pilin subunit expression in N. gonorrhoeae provides new insights into the correlations between TFP expression, structure, and associated functions.
This study was supported by funds from EMBO short-term fellowship ASTF 139.00-02 (H.C.W.-L.) and the Research Council of Norway Functional Genomics initiative (FUGE) directed through The Consortium of Advanced Microbial Sciences and Technologies (CAMST).
Published ahead of print on 15 June 2007. ![]()
Supplemental material for this article may be found at http://jb.asm.org/. ![]()
Present address: Westfälische Wilhelms-Universität Münster, Institut für Allgemeine Zoologie und Genetik, 48149 Münster, Germany. ![]()
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