Files in this Data Supplement:

• Supplemental file 1 - Table S1, normalized hybridization signals of cDNA; Table S2, quantitative RT-PCR analysis of selected genes; Table S3, genes with significantly regulated expression levels in the acidic sample; Table S4, genes with significantly regulated expression levels in the heat shock sample; Table S5, genes with significantly regulated expression levels in the oxidative stress sample; Table S6, genes with significantly regulated expression levels in the HPC-treated sample; Table S6, genes with significantly regulated expression levels in the cow sample; Table S8, examples of heirarchical clusters and interesting gene groups; Fig. S1, RNA samples isolated from both cow samples and in vitro cultures; Fig. S2, screening of M. ap mutants in the murine model of paratuberculosis
  Zipped Excel document, 6.3MB.