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Journal of Bacteriology, February 2007, p. 1435-1440, Vol. 189, No. 4
0021-9193/07/$08.00+0 doi:10.1128/JB.01218-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.
School of Biological Sciences, University of Wollongong, Wollongong, NSW 2522, Australia
Received 4 August 2006/ Accepted 20 September 2006
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Plasminogen is a single-chain glycoprotein found in plasma and extracellular fluids at concentrations of approximately 2 µM (8). Specific mammalian plasminogen activators cleave plasminogen at a single site (Arg560-Val561), resulting in the formation of the two-chain plasmin molecule, which contains a serine protease active site in the C-terminal region. Plasmin(ogen) typically interacts with its ligands via lysine binding sites located in the five kringle domains of the N terminus of plasminogen (21). Plasmin(ogen) receptors and activators have been found to be expressed by a large number of bacteria, including group A, C, and G streptococci (15). In addition to the secreted nephritogenic plasminogen-binding protein (22), three cell surface-expressed GAS plasminogen-binding proteins have been identified. These are streptococcal surface enolase (SEN) (18), glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (4, 19), and the plasminogen-binding group A streptococcal M protein (PAM) (3). Furthermore, the secreted protein streptokinase enables GAS to activate plasminogen to plasmin (15). Plasmin has the ability to degrade fibrin clots, connective tissue, and the extracellular matrix (8, 21). Thus, sequestration of this proteolytic system by GAS may have significant pathological consequences in the host.
Coded for by the emm gene, M protein is one of the major virulence factors of GAS. The emm family of genes consists of emm, mrp, and enn genes (12). The N termini of M proteins consist of a highly variable region, followed by a series of repeat domains designated a, b, c, and d. The number and type of repeats vary significantly between different M proteins (7, 16). Here we describe a novel, high-affinity plasminogen-binding M protein, the PAM-related protein Prp. Associated with an S. pyogenes emm 98.1 strain isolated from a severe invasive infection and which displays high levels of cell surface plasminogen binding (17), Prp is phylogenetically distinct from previously characterized plasminogen-binding M proteins. Using site-directed mutagenesis we show that, like PAM, Prp binds plasminogen via arginine and histidine residues, rather than lysine residues, which commonly mediate the interaction of plasminogen with its many other receptors.
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Phylogenetic analysis. In order to characterize the evolutionary relationships between Prp and naturally occurring variants of the PAM protein, the full amino acid sequences of 12 previously identified PAM proteins and Prp (17) were aligned using ClustalW (31). Evolutionary gene trees were then estimated using MrBayes version 3.1 (13, 24). For the MrBayes analysis, four simultaneous chains were run, with trees sampled every 100 generations for a total of 500,000 generations. Plots of likelihood scores against generation were used to identify when the analysis had reached stationarity. Trees sampled prior to stationarity (the first 40 trees) were discarded. The amino acid model was empirically chosen by MrBayes, using the prset aamodelpr = mixed command. This permits jumping between nine alternative amino acid substitution models. The WAG model (33) was empirically chosen by MrBayes. The majority rule consensus of all trees generated after stationarity was used to estimate the posterior probabilities of the various nodes in the most likely tree.
DNA sequence analysis, expression, and purification of recombinant M proteins. The Prp gene from GAS strain NS88.2 had previously been cloned into the vector pCR2.1 (17). Primer sequences used for DNA sequence analysis are available upon request. DNA sequence reactions were undertaken using terminator ready reaction mix (PE Applied Biosystems). DNA sequencing gels were prepared as per the manufacturer's instructions and electrophoresed using a Perkin-Elmer ABI PRISM 377 sequencer. Sequence data were analyzed using ABI Prism DNA sequencing analysis software (Perkin-Elmer). To facilitate functional analysis, Prp was cloned into the expression vector pGEX-2T essentially as previously described (26). Briefly, the Prp gene was amplified from a pCR2.1 construct by using Pfu polymerase (Stratagene). PCR cycling parameters consisted of 30 cycles of 97°C, 55°C, and 72°C for denaturation, annealing, and extension reactions, respectively. Amplicons were cloned into pGEX-2T (29), resulting in an N-terminal fusion with glutathione S-transferase, and constructs were transformed into E. coli TOP10 (Invitrogen) by standard procedures (25). The presence of both a His6 tag and a glutathione S-transferase tag on the recombinant protein enabled purification by two methods. DNA sequence analysis was used to confirm the lack of PCR errors in the cloned amplification product. Recombinant proteins were expressed and purified as described previously (26). Each step of the protein purification process was monitored by 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) analysis (14), with protein visualized using Coomassie blue R250 staining.
Site-directed mutagenesis. Sequence alignment of Prp with other plasminogen-binding M proteins identified a potential plasminogen binding site within the molecule. In order to confirm the role of specific residues within this region in the interaction of Prp with plasminogen, site-specific mutations were introduced into the putative binding site. The wild-type pGEX-2T construct (100 ng) was used as template DNA to create site-directed mutants with the QuikChange site-directed mutagenesis kit (Stratagene). PCR mixtures consisted of 1x PFU reaction buffer (Stratagene), 0.25 mM deoxynucleoside triphosphates (Boehringer Mannheim, Germany), 2.5 U of Pfu Ultra polymerase (Stratagene), and 125 ng of each primer, made up to a volume of 50 µl with distilled water. Oligonucleotide primers (Sigma-Aldrich) were designed as per the manufacturer's instructions (Stratagene). In general, primers consisted of sequence encoding the desired mutation, flanked on either side by 15 nucleotides of wild-type sequence. The specific primer sequences are available upon request. For site-directed mutants containing more than two mutations not encoded by a single primer, alanine residues were sequentially introduced using previously mutated DNA as a template. Following an initial denaturation step (95°C, 30 s), PCR cycling parameters consisted of 16 cycles of 95°C for 30 s, 55°C for 1 min, and 68°C for 10 min. An additional 7-min extension at 55°C was then performed. PCR was conducted with a Cooled Palm 96 thermocycler (Corbett Research). Nonamplified template DNA was removed by incubation of reaction mixtures for 1 h at 37°C following the addition of DpnI (10 U/50-µl reaction mixture). E. coli TOP10 (Invitrogen) was transformed with 150 ng of DpnI-digested PCR product by standard procedures (25).
CD spectroscopy.
To highlight potential variation in protein secondary structure as a result of site-directed mutagenesis, far-UV circular dichroism (CD) spectra were obtained for both wild-type and mutant recombinant proteins. CD spectra were acquired using a Jasco J-810 spectropolarimeter (Jasco, Canada) at room temperature. CD spectral data were recorded from 190 to 250 nm in a 1-cm-path-length cell containing 1.5 ml of protein solution at a concentration of 0.04 mg/ml in 10 mM sodium phosphate buffer (pH 7.4). Recorded data represent the averages of six scans, corrected for buffer baseline. Molar residue ellipticity ([
]) was calculated using the following formula: [
] =
x 100 x molecular weight/concentration (mg/ml) x distance x number of amino acids (28). The percentage of
-helices was estimated from the ellipticity at 222 nm using the following formula: percent
-helix = (
222 nm 4,800)/45,400 (20).
Plasminogen purification and labeling. Glu-plasminogen, the circulating form of plasminogen, was purified from human plasma by using lysine Sepharose 4B affinity chromatography as described previously (1, 26). Purified plasminogen was biotinylated by the addition of 10% (vol/vol) 1 M NaHCO3 (pH 9), and a 40 molar excess of biotin-X-N-hydroxysuccinimide in dimethyl sulfoxide (Sigma-Aldrich). The reaction mixture was incubated at 4°C overnight with mixing. Free biotin was separated from biotinylated plasminogen by PD-10 gel filtration chromatography (Amersham Biosciences).
Plasminogen binding analysis. Solid-phase plasminogen binding assays were performed in order to assess both the affinity of Prp for plasminogen and the impact of introduced mutations on protein function, essentially as previously described (26). Ninety-six-well microtiter plates (Greiner Bio-one, Germany) were coated with 150 nM recombinant protein (50 µl in 0.1 M NaHCO3) at 4°C overnight. Following three washes with PiNT (50 mM Na2HPO4, 150 mM NaCl, 0.05% Tween 80, pH 7.5), plates were blocked with 50 µl of blocking solution (1% skim milk powder in PiNT) for 1 h at 37°C. Wells were washed as described above, and 500 nM biotinylated glu-plasminogen was diluted in a threefold titration across the plate with blocking buffer in the presence or absence of a 50-fold molar excess of unlabeled glu-plasminogen. Plasminogen was allowed to bind to immobilized proteins for 2 h at room temperature. For competition assays, decreasing concentrations of unlabeled fluid-phase PAMNS13 (25 µM to 0.14 nM) or wild-type Prp were allowed to compete with immobilized proteins for binding to biotinylated glu-plasminogen. Competitor was titrated threefold across the microtiter plate prior to the addition of biotinylated glu-plasminogen to all wells, at a final concentration of 500 nM. The assay mixture was incubated for 2 h at room temperature. Following the plasminogen incubation step, microtiter plates were washed three times, and 50 µl of neutravidin conjugated to horseradish peroxidase (Progen, Australia) diluted 1:5,000 with blocking solution was added to all wells and incubated for 2 h at room temperature. After five washes with PiNT, the reactions were developed by the addition of 50 µl o-phenylenediamine (Sigma-Aldrich) substrate (8 mM Na2HPO4 [pH 5.0], 2.2 mM o-phenylenediamine, 3% H2O2). Color development was stopped by the addition of 50 µl of 10 M hydrochloric acid, and the plates were read at 490 nm using a Spectramax 250 plate reader (Molecular Devices).
Data were normalized against the highest and lowest absorbance value for each assay, and nonlinear regression analysis was performed using GraphPad Prism (v4.00; GraphPad Software, CA). For the calculation of equilibrium binding dissociation constants (Kd), a one- versus two-site binding analysis was conducted and the best-fit curve fitted to the data. For competition experiments, a one-site competition curve was fitted to the data, from which the effective concentration of competitor required to inhibit binding by 50% was calculated.
Statistical analysis. For plasminogen binding experiments, a one-way analysis of variance was initially used on all data, followed by an unpaired t test with Welsch's correction to determine if there was any significant difference in the Kd values obtained for various proteins in this study.
Nucleotide sequence accession number. The Prp gene sequence has been submitted to the NCBI database and assigned GenBank accession number AY351856.
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FIG. 1. Phylogeny generated by Bayesian analysis of the amino acid sequences of 13 PAM genes (PAMNS13, GenBank accession no. AY351851; PAMNS455, GenBank accession no. AY351857; PAMNS265, GenBank accession no. AY351855; PAMNS223, GenBank accession no. AY351854; PAMNS253, GenBank accession no. AY351853; PAMNS53, GenBank accession no. AY351852; PAMNS32, GenBank accession no. AY351850; PAMNS50.1, GenBank accession no. AY351849; PAMNS59, GenBank accession no. AY351848; PAMNS1133, GenBank accession no. AY351847; PAMNS10, accession no. GenBank AY351846; PAMNS221, GenBank accession no. DQ136319; NS696 M1 protein, GenBank accession no. AY351858; and Prp, GenBank accession no. AY351856). MLC36 (GenBank accession no. Z32677) and MLC72 (GenBank accession no. Z32678) are plasminogen-binding M protein sequences from group C and group G streptococci, respectively (2). The M1 (11) and NS696 M1 protein sequences were included as outgroups.
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FIG. 2. SDS-PAGE and ligand blot analysis of recombinant M proteins. (A) SDS-12% polyacrylamide gel showing the purified recombinant proteins PAMNS13 (lane 1), Prp (lane 2), and NS696 M1 (lane 3). Molecular mass markers are given in kilodaltons. (B) Ligand blot analysis employing biotinylated glu-plasminogen of purified recombinant proteins PAMNS13 (lane 1), Prp (lane 2), and NS696 M1 (lane 3). Molecular mass markers are given in kilodaltons.
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FIG. 3. Saturation binding analysis of biotinylated glu-plasminogen binding to immobilized recombinant proteins. Biotinylated glu-plasminogen binding to immobilized recombinant proteins Prp (A), PAMNS13 (B), and NS696 M1 protein (C) was measured in the absence ( , total binding) and presence ( , nonspecific binding) of a 50-fold molar excess of unlabeled glu-plasminogen. Specific binding ( ) was determined by subtracting nonspecific binding from total binding at each concentration. A one-site hyperbolic binding function was fitted to the data (P < 0.05), from which the binding dissociation constants were determined. Error bars represent the standard errors of the means.
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FIG. 4. Competition of glu-plasminogen binding to immobilized recombinant Prp with fluid-phase PAMNS13. Binding of biotinylated glu-plasminogen to immobilized Prp was measured in the presence of various concentrations of unlabeled fluid-phase PAMNS13. Data points are the mean values of triplicate readings, with error bars indicating standard errors of the means. One-site competition analysis was used to determine the concentration of PAMNS13 required to inhibit binding of biotinylated glu-plasminogen by 50%.
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FIG. 5. (A) Translated DNA sequences of the plasminogen-binding region (a1/a2 repeats) of the prototype PAM binding site with PAMNS13 and a putative 21-amino-acid residue Prp plasminogen-binding site. *, residues identical to those of the PAM sequence; -, gaps in the alignment. (B) Alignment of the plasminogen binding domain of wild-type Prp with those of the three site-directed mutants constructed in this study. Mutated residues are indicated in boldface.
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-helical proteins (20). Thus, even after mutagenesis these proteins appear to maintain an
-helical secondary structure. Additionally, for all proteins the two minima are of a similar magnitude, which is indicative of coiled-coil proteins (9, 10). The percent
-helicity ranged from 37% to 43%. These data confirm that these proteins are structurally similar and that site-directed mutagenesis has resulted in minimal changes to secondary structure. In order to determine the impact of site-directed mutagenesis on plasminogen binding by Prp, plasminogen binding analysis was conducted. Wild-type Prp and Prp[K96 K101] both interacted with biotinylated glu-plasminogen in a ligand blot analysis. No interaction with Prp[K96K101R107H108] or Prp[R107H108] was seen (Fig. 6). This suggests that the interaction of Prp with glu-plasminogen is mediated by residues Arg107 and His108. To further characterize the role of these residues in plasminogen binding and to determine the specificity of Prp[K96K101] plasminogen binding, solid-phase plasminogen binding assays were conducted using the site-directed mutant Prp proteins. None of the site-directed mutants interacted in a specific, saturable fashion with 500 nM plasminogen (Fig. 7). Prp[K96K101] approached but did not reach saturation (Fig. 7). Indeed, in the presence of 500 nM plasminogen, wild-type Prp was found to interact specifically with approximately 80% of the available labeled plasminogen. In contrast, Prp[K96K101] shows only 50% specific binding at the same plasminogen concentration. This suggests that this protein is still able to mediate a lower-affinity interaction with plasminogen, in spite of the absence of lysine residues. Only nonspecific binding was found for site-directed mutants Prp[K96K101R107H108] and Prp[R107H108]. Thus, it appears that residues Arg107 and His108 are indispensable for mediation of the high-affinity interaction of Prp with plasminogen.
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FIG. 6. SDS-PAGE and ligand blot analysis of Prp site-directed mutants. (A) SDS-12% polyacrylamide gel showing the purified recombinant proteins Prp (lane 1), Prp[K96K101R107H108] (lane 2), Prp[K96K101] (lane 3), and Prp[R107H108] (lane 4). Molecular mass markers are given in kilodaltons. (B) Ligand blot analysis employing biotinylated glu-plasminogen of purified recombinant proteins Prp (lane 1), Prp[K96K101R107H108] (lane 2), Prp[K96K101] (lane 3), and Prp[R107H108] (lane 4). Molecular mass markers are given in kilodaltons.
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FIG. 7. Specific binding of biotinylated glu-plasminogen to immobilized recombinant proteins Prp ( ), Prp[K96K101R107H108] (*), Prp[K96K101] ( ), and Prp[R107H108] (). Specific binding was determined by subtracting nonspecific binding from total binding at each concentration. A one-site hyperbolic binding function was fitted to the data (P < 0.05), from which the binding dissociation constants were determined. Error bars represent the standard errors of the means (n = 3).
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1 nM) (3, 26). While the interaction of Prp with glu-plasminogen is of a lower affinity than that of PAM (Kd = 7.8 nM), Prp binds plasminogen specifically. Furthermore, circulating concentrations of glu-plasminogen are approximately 2 µM, and thus the interaction of Prp with plasminogen is within physiologically relevant concentrations of the zymogen (8).
Plasminogen typically binds to receptors via C-terminal or internal lysine residues, as exemplified by the previously characterized GAS plasminogen receptors SEN and GAPDH. Binding of plasminogen to SEN occurs via residues Lys434 and Lys435 at the C terminus of the SEN molecule, while binding of plasminogen to GAPDH occurs via the C-terminal lysine Lys334 (4, 18). In contrast, plasminogen binding to PAM has been attributed to internal lysine residues Lys98 and Lys111(3, 34, 35). However, it has recently been demonstrated that PAM mediates its interaction with plasminogen via arginine and histidine residues within two internal repeat domains (27). Mutation of lysine residues within a putative Prp plasminogen binding site (Lys96 and Lys101) did not result in the abrogation of plasminogen binding. While mutation of these residues reduced the affinity of Prp for plasminogen, binding was fully eliminated only following the mutation of residues Arg107 and His108 to alanine. Indeed, the finding that plasminogen binding was eliminated even in the presence of lysine residues highlights the role of residues Arg107 and His108 in mediating the interaction of Prp with plasminogen. Changes in plasminogen binding by site-directed mutants do not appear to result from protein structural changes, as far-UV CD analysis of site-directed mutants indicates that these molecules are structurally similar to the wild-type Prp. The percent
-helicity for mutants reported here was between 37% and 43%. CD analysis of other streptococcal M proteins has found them to contain between 23% and 70%
-helices (20). This demonstrates that despite the phylogenetic differences between PAM and Prp, both interact with plasminogen via a common mechanism which is distinct from the interaction of other plasminogen-binding proteins.
X-ray crystallography analysis of a 30-amino-acid peptide has shown that arginine and histidine residues, when correctly presented in an alpha-helical molecule, are able to make numerous salt bridge and hydrophobic electrostatic interactions with recombinant kringle 2 of plasminogen, forming a pseudoligand similar to the lysine analogue
-amino caproic acid (23). It is conceivable that the residues Arg107 and His108 within Prp interact with plasminogen in a similar fashion. Thus, the binding site of Prp can be localized to a single domain within the N terminus of the protein encompassing residues Arg107 and His108.
Recent findings that the acquisition of plasminogen by S. pyogenes may be crucial for the virulence of certain strains of GAS (6, 30), and the ability of multiple GAS proteins to facilitate this process, necessitate a deeper understanding of the mechanisms via which GAS interacts with plasminogen. This study identifies a novel plasminogen-binding M protein which interacts with plasminogen via arginine and histidine residues within a single binding domain. While lysine residues within this domain do appear to contribute partially to this interaction, they are not the primary residues by which plasminogen binds, in contrast to findings for other GAS plasminogen receptors. The finding that multiple M proteins with plasminogen binding ability have evolved separately is indicative of the selective advantage that plasminogen binding confers upon GAS and supports the suggestion that interaction with the host plasma protein plasminogen may be important for the virulence of certain strains of GAS. Plasminogen binding by arginine and histidine residues has, to date, been reported only for GAS plasminogen-binding M proteins. This interaction may represent a novel way in which the bacterium binds to the low-affinity kringle 2 of plasminogen, thereby avoiding competition with other abundant host proteins and inhibitors. The apparent advantage conferred on GAS by its ability to interact with the host plasminogen activation system via a number of receptors has widespread implications for both the study and treatment of GAS pathogenesis and infection.
We thank T. Treweek for her assistance with the circular dichroism analysis.
Published ahead of print on 29 September 2006. ![]()
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