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Journal of Bacteriology, March 2007, p. 1604-1615, Vol. 189, No. 5
0021-9193/07/$08.00+0     doi:10.1128/JB.00897-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Oxygen Reactivity of Both Respiratory Oxidases in Campylobacter jejuni: the cydAB Genes Encode a Cyanide-Resistant, Low-Affinity Oxidase That Is Not of the Cytochrome bd Type{triangledown}

Rachel J. Jackson,1,§ Karen T. Elvers,2 Lucy J. Lee,1 Mark D. Gidley,1 Laura M. Wainwright,1 James Lightfoot,1 Simon F. Park,2 and Robert K. Poole1*

Department of Molecular Biology and Biotechnology, University of Sheffield, Western Bank, Sheffield S10 2TN, United Kingdom,1 School of Biomedical and Molecular Sciences, University of Surrey, Guildford, Surrey GU2 7XH, United Kingdom2

Received 22 June 2006/ Accepted 26 November 2006


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ABSTRACT
 
The microaerophilic bacterium Campylobacter jejuni is a significant food-borne pathogen and is predicted to possess two terminal respiratory oxidases with unknown properties. Inspection of the genome reveals an operon (cydAB) apparently encoding a cytochrome bd-like oxidase homologous to oxidases in Escherichia coli and Azotobacter vinelandii. However, C. jejuni cells lacked all spectral signals characteristic of the high-spin hemes b and d of these oxidases. Mutation of the cydAB operon of C. jejuni did not have a significant effect on growth, but the mutation reduced formate respiration and the viability of cells cultured in 5% oxygen. Since cyanide resistance of respiration was diminished in the mutant, we propose that C. jejuni CydAB be renamed CioAB (cyanide-insensitive oxidase), as in Pseudomonas aeruginosa. We measured the oxygen affinity of each oxidase, using a highly sensitive assay that exploits globin deoxygenation during respiration-catalyzed oxygen uptake. The CioAB-type oxidase exhibited a relatively low affinity for oxygen (Km = 0.8 µM) and a Vmax of >20 nmol/mg/s. Expression of cioAB was elevated fivefold in cells grown at higher rates of oxygen provision. The alternative, ccoNOQP-encoded cyanide-sensitive oxidase, expected to encode a cytochrome cb'-type enzyme, plays a major role in the microaerobic respiration of C. jejuni, since it appeared to be essential for viability and exhibited a much higher oxygen affinity, with a Km value of 40 nM and a Vmax of 6 to 9 nmol/mg/s. Low-temperature photodissociation spectrophotometry revealed that neither oxidase has ligand-binding activity typical of the heme-copper oxidase family. These data are consistent with cytochrome oxidation during photolysis at low temperatures.


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INTRODUCTION
 
Campylobacter jejuni is the predominant bacterial agent of human gastrointestinal infections worldwide and therefore represents a major global public health burden (15). Currently, the development of health protection interventions against this food-borne pathogen is restricted by our limited knowledge of the mechanisms that confer virulence and enable the pathogen to persist within the food chain. The major reservoir for campylobacters is broiler flocks of poultry reared for human consumption. The predominant clinical feature of campylobacteriosis is the development of acute enteritis, abdominal pain, and diarrhea. Uncommon but serious complications may, however, ensue (27). Members of the genus Campylobacter are gram-negative, highly motile, flagellate, spirally curved rods. A distinguishing feature is their strictly microaerophilic lifestyle (16), requiring an atmospheric composition of 5 to 10% oxygen and 5 to 13% carbon dioxide for optimal growth, but oxygen metabolism and the basis of microaerophily are poorly understood. Hydrogen and formate are the most effective sources of energy for C. jejuni (18). NADH dehydrogenase activity in C. jejuni is low, and NADPH acts as a more effective electron donor than NADH in campylobacters (18, 24). The predominant quinone species is dimethylmenaquinone-6 (26). Campylobacters are very rich in b- and c-type cytochromes, but most of these are uncharacterized. The lack of any spectrophotometric signals in the red spectral region suggests that campylobacters lack cytochromes of the a and d types (18, 24, 29), but several lines of evidence point to terminally branched respiratory pathways. First, during aerobic formate oxidation, two systems appeared to operate in Campylobacter sputorum subsp. bubulus (30): one was linked to the respiratory chain and thought to be responsible for proton translocation, and the other was of lower O2 affinity and tentatively described as a H2O2-producing system. Second, cyanide sensitivity studies indicated that the respiratory chain is branched, terminating at two oxidases that differ in their sensitivities to cyanide (18, 24), but the oxidases have not been identified at the molecular level or further characterized.

These early biochemical and physiological studies have been complemented by analysis of the genome sequence of C. jejuni NCTC11168, which is predicted to encode components of an aerobic respiratory chain, namely, dehydrogenases (including a putative NADH:quinone reductase, NDH-1), a cytochrome bc1 complex, and two terminal oxidases (31, 45). Other genes encoding respiratory components include genes for c-type cytochromes (Cj0037c, Cj0874c, Cj1020c, Cj1153, Cj1357c, and Cj1358c) and for a putative ubiquinol-cytochrome c reductase (Cj1184-6c) (31). Although the existence of cytochrome o in succinate-reduced extracts and membranes of Campylobacter fetus has been reported (24), the genome sequence does not reveal genes likely to encode such an oxidase. The genome also contains genes for two periplasmic cytochrome c peroxidases, namely, Cj0020c and Cj0358 (31). Genes annotated as encoding a "cytochrome bd oxidase" are present (Cj0081-2), in addition to genes coding for a putative "cb-type cytochrome c oxidase" or "cytochrome cbb3-type oxidase" (Cj1487c, Cj1488c, Cj1489c, and Cj1490c) (31, 45).

In this paper, we describe a detailed study of the oxygen reactivity of C. jejuni and assign distinct oxygen affinities and cyanide sensitivities to the two oxidases. Such studies contribute to an understanding of the microaerophilic lifestyle of this important human pathogen.


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MATERIALS AND METHODS
 
Bacterial strains. The wild-type strain used was C. jejuni strain NCTC11168. A mutant strain defective in cydAB was constructed as follows. Genomic DNA was isolated from C. jejuni as described before (32). The cydA (Cj0081) and cydB (Cj0082) genes were amplified by PCR, using the oligonucleotide primers CYD1 (5'-AACTCTTGGAAAGACCCTTTGGAAA-3') and CYD2 (5'-GGATCCAATTACTAAAGGCCAAGCCAATAA-3'). The 2,904-bp DNA fragment was cloned into the pBAD-TOPO TA cloning vector (Invitrogen) and oriented using BamHI (restriction site is underlined). Inverse PCR (54) was performed using the primers CYD3 (5'-GCAACAAGATCTAGTCCTGCACGATGTTCACCTTGAT-3') and CYD4 (5'-GCAACAAGATCTTCGATGAGCTTAGCAAGGATGAGCT-3'), resulting in the deletion of 866 bp, mostly from cydA, and introducing a unique BglII restriction site (underlined). The PCR product was digested using BglII and self-ligated before transformation into Escherichia coli DH5{alpha} cells. Plasmid DNA was recovered and digested with BglII. A kanamycin resistance cassette was excised from pJMK30 (48) by digestion using BamHI. This kanamycin resistance cassette was ligated into the plasmid construct, thereby inactivating cydAB by insertion into the operon. The resulting construct was introduced into competent C. jejuni cells by electroporation. Integration into the chromosome occurred via double homologous recombination. Transformants were selected on Mueller-Hinton agar containing kanamycin at 50 µg/ml and confirmed as defective in cydAB by PCR and Southern blot analysis. This strain is referred to as RKP1341.

Media and culture conditions. Cells were maintained at –70°C as stocks containing 15% (vol/vol) glycerol and 3.7% (wt/vol) brain heart infusion broth. Cells were streaked onto Mueller-Hinton agar (Oxoid) and incubated for 48 h at 37°C in a sealed jar containing a microaerobic atmosphere generated by a CampyGen sachet (Oxoid). Cells from plates were inoculated into 50 ml Mueller-Hinton broth (Oxoid) in 100-ml flasks and shaken overnight at approximately 115 rpm in a modular atmosphere-controlled system VA500 workstation (Don Whitley Scientific) maintained at 42°C with a constant gas supply of 10% oxygen, 10% carbon dioxide, and 80% nitrogen (unless specified otherwise). Wild-type cells were grown in the presence of amphotericin B and vancomycin HCl (Duchefa) at 10 µg/ml. Cultures of the cydAB mutant also contained kanamycin at 50 µg/ml for selection. After approximately 18 h, starter cultures were used to give a 3% (vol/vol) inoculation of 150 ml of Mueller-Hinton broth in 250-ml-capacity baffled flasks (Bellco). These cultures were incubated microaerobically in the VA500 workstation with constant shaking. For batch growth, cultures were typically harvested at an optical density at 600 nm (OD600) of 0.2 (after shaking for approximately 8 h), and cells were washed twice in 50 mM potassium phosphate buffer (pH 7.3) and either used immediately or stored at –20°C. Viable counts were performed by serially diluting portions of microaerobically grown cells in 50 mM potassium phosphate buffer (pH 7.3) under atmospheric conditions, plating them on Mueller-Hinton agar, and microaerobically incubating them in the modular atmosphere-controlled system workstation.

Real-time PCR. C. jejuni NCTC11168 broth cultures in Mueller-Hinton broth (100 ml and 200 ml) were incubated in 250-ml flasks, and the total volumes were harvested directly into 6.3 ml prechilled phenol (made up in 118.7 ml 100% ethanol) to stabilize the RNA. Samples were centrifuged at 5,500 rpm for 4 min (4°C), and total RNA was purified from cell pellets, using a QIAGEN RNeasy Mini kit as recommended by the supplier. RNA concentration and purity were determined by A260/A280 measurements. cDNA synthesis was carried out using 4 µg of starting material primed with 9 µg poly(dN)6 random hexamers (Amersham Biosciences). Reaction mixes (20 µl) containing 0.5 mM (each) dATP, dTTP, dGTP, and dCTP were incubated for 2 h at 42°C with 200 units Superscript II RNase H reverse transcriptase (Invitrogen). Following synthesis, cDNA was purified using a PCR purification kit (QIAGEN) to remove unincorporated deoxynucleoside triphosphates and primers. Gene-specific primers were designed to amplify 50- to 150-nucleotide fragments of target genes, using PRIMER 3 software (42). Sequences for the primers are as follows: gyrA (internal control) forward, 5'-ATGCTCTTTGCAGTAACCAAAAAA-3'; gyrA reverse, 5'-GGCCGATTTCACGCACTTTA-3'; cydA forward, 5'-CGAACTTAGTAGCGTTGATTGG-3'; cydA reverse, 5'-CAAGCCTAAGGTTAAAGGCACA-3'; cydB forward, 5'-TTGCTGTTTTGCTTGTTATTGG-3'; and cydB reverse, 5'-CTGTTAAAACCGTTCCAAGTCC-3'. A SYBR green mix was made at a ratio of 13 µl Quantace Sensimix (Bioline), 0.5 µl SYBR green, and 4.5 µl nuclease-free water (Sigma). Each reaction was carried out in a total volume of 25 µl in a 96-well optical reaction plate (Applied Biosystems). Each well contained 16 µl SYBR green mix (above), 12.5 pmol of each of the two primers, and 5 µl of cDNA sample. PCR amplification was carried out in an ABI 7700 thermocycler (PE Applied Biosystems), with the following thermal cycling conditions: 50°C for 2 min and 95°C for 10 min, followed by 40 cycles of 95°C for 15 s and 60°C for 1 min. Data were analyzed using the manufacturer's Sequence Detector system software and further processed in Microsoft Excel. A standard curve was established using genomic DNA for each gene studied to confirm that the primers amplified at the same rate. The relative levels of expression of genes of interest in 200-ml cultures compared with those in 100-ml cultures were calculated following a protocol for the standard curve method (1a). No-template reactions were included as negative controls.

Preparation of soluble and membrane fractions. The methods for preparation of soluble and membrane fractions were based on earlier protocols (18, 34). Whole cells were resuspended in 50 mM potassium phosphate buffer (pH 7.3) at 4°C and sonicated (six cycles of 15 s each) in a Sanyo Soniprep 150 instrument. The sonicate was then spun for 15 min at 12,000 x g. The supernatant was retained and spun for 60 min at 55,000 rpm (207,000 x g). The soluble fraction was retained. The membrane pellet was gently resuspended in a small volume of 50 mM potassium phosphate buffer. Protein concentrations were determined by the method of Markwell et al. (25). All fractions were stored at –70°C.

Measurement of oxygen consumption using a Clark-type electrode. A digital Clark-type electrode system (model 10; Rank Brothers, Bottisham, Cambridge, United Kingdom) was used to measure oxygen consumption. The electrode was calibrated by using air-saturated 50 mM potassium phosphate buffer (pH 7.3), assuming an oxygen concentration of 220 µM, and sodium dithionite to zero the electrode. The buffer was then air saturated by stirring for 10 min, and after capping of the chamber, additions were made using Hamilton microliter syringes through a capillary hole. The effect of NaCN on respiratory activity was tested by adding a freshly prepared solution to a final concentration of 100 or 125 µM approximately 5 min before adding sodium formate (5 mM final concentration).

Room temperature spectrophotometry. Electronic absorption spectra were measured using a custom-built SDB4 dual-wavelength scanning spectrophotometer (University of Pennsylvania School of Medicine Biomedical Instrumentation Group and Current Designs, Philadelphia, PA) (21). Harvested cells were washed and resuspended in 50 mM potassium phosphate buffer (pH 7.3) for spectroscopy (dithionite-reduced minus air-oxidized and reduced-plus-CO minus reduced difference spectra). Cytochrome concentrations were calculated using the following extinction coefficients: cytochrome c, 19.1 mM–1 cm–1 ({alpha} peak minus {alpha} trough) (4); cytochrome b, 17.5 mM–1 cm–1 (560-nm value minus 575-nm value) (20); and CO-binding cytochrome c, 25 mM–1 cm–1 ({alpha} peak minus {alpha} trough) (52).

Photodissociation spectrophotometry at subzero temperatures. Low-temperature spectral work was based on earlier work (37). Intact cells from liquid cultures grown at 10% oxygen or subcellular fractions were supplemented with ethylene glycol (final concentration, 30% [vol/vol]) and reduced with a few grains of sodium dithionite. CO was introduced as described for the room-temperature studies; all further manipulations were performed in the dark to prevent photodissociation of the CO complex until its activation by actinic light. The cuvette was cooled to –78°C in an ethanol-solid CO2 bath for 10 min, transferred to the sample compartment of the dual-wavelength spectrophotometer, and equilibrated at the experimental temperature. The temperature was controlled by a flow of nitrogen gas, cooled by passage through a coiled copper tube immersed in liquid nitrogen and then through a small heater. Photolysis was achieved with a focused beam of actinic white light from a 150-W slide projector. Following 5 min of illumination, difference spectra (postphotolysis minus prephotolysis) were recorded immediately and every 5 min thereafter for 30 min. All spectra shown are typical of duplicate or triplicate experiments for each condition studied.

Determination of oxygen affinities. Leghemoglobin from soybean nodules and myoglobin (from ferric horse skeletal muscle; Sigma) were converted to the oxy forms (9). In brief, 2 mM solutions in 25 mM potassium phosphate buffer plus 1 mM EDTA (in MilliQ water) were reduced by adding sodium dithionite (0.1 M), prepared in 10 mM NaOH, and sparged for 15 min with nitrogen gas at a concentration of 2.5 times that of the globin. A Pharmacia Biotech Sephadex G-25 M PD-10 column was equilibrated with air-saturated buffer (5 to 10 times the column bed volume), with nitrogen gas blowing over the surface, and buffer was allowed to run down to the level of the PD-10 sinter. The ferrous myoglobin solution was then added under nitrogen and allowed to reach the sinter level. The headspace of the column was filled with buffer, and the eluate was collected. The absolute spectrum of the eluate was scanned against a buffer baseline to confirm the identity of the eluate as oxymyoglobin. Oxyglobins were stored at –70°C.

Oxygen affinity studies were performed essentially as described before (9), using the dual-wavelength scanning spectrophotometer, but in time-scanning mode. Oxyleghemoglobin and oxymyoglobin solutions were diluted in the buffer described above and deoxygenated by being sparged with nitrogen gas at final concentrations of 15 µM and 10 µM, respectively. A purpose-built glass cuvette with a 1-cm path length and approximately 1.5-ml capacity was fitted with a Subaseal with glass capillary tubing inserted through it. Solutions were added to the cuvette via the glass tubing, using a Hamilton syringe. A small magnetic stirrer bar in the cuvette continuously mixed the contents; electromagnetic interference was avoided by µ shielding the photomultiplier. The cuvette was completely filled with a solution of oxyglobin (approximately 15 µM), and approximately 30 s later, a suspension of cells grown at 10% oxygen or derived membranes were added to give a total protein content ({omega}) of approximately 0.5 mg. After 30 s, sodium formate (final concentration, 5 mM) was added to initiate respiration. Sodium dithionite (final concentration, 2 mM) was added at the end to ensure that deoxygenation had occurred. Spectral and absorbance-time data were stored in an iMac computer and analyzed using SoftSDB (Current Designs). The rate of oxygen consumption, V, and the average concentration of free dissolved oxygen, S, were calculated using Microsoft Excel software. For leghemoglobin, {Delta}A (576 nm minus 565 nm) was measured, while for myoglobin, {Delta}A (582 nm minus 565 nm) was monitored. For soybean leghemoglobin, K' = 43.5 x 10–9 M; for horse skeletal muscle myoglobin, K' = 786 x 10–9 M. Data obtained where Yt was <0.1 were not used in order to avoid possible errors caused by the generation of ferric globin by autoxidation (3), and only data with Yt values that fell between 0.85 and 0.15 were analyzed, as these points were well within the reliable working range of the globins used. Plots of 1/V against 1/S (Lineweaver-Burk) and V against V/S (Eadie-Hofstee) were calculated. Eadie-Hofstee plots were taken to be the more reliable linear transformation (11). Km values were determined using the linear regression feature of the software, and Vmax values were estimated using plots of V against S or Lineweaver-Burk plots.

Formaldehyde assays. Formaldehyde assays were based on published methods (2). CO was slowly bubbled through dithionite-reduced whole cells or membrane suspensions for 10 min. The cuvette contents were exposed to actinic white light for 15 min, and the cuvette contents were then decanted and kept on ice. Samples (0.5 ml) were taken at 15- and 30-min intervals and mixed with 0.75 ml trichloroacetic acid. Tubes were spun at 38,100 x g to pellet cell debris, and the supernatant fraction (1 ml) was mixed with 0.5 ml Nash reagent. Tubes were incubated at 60°C for 10 min, and the production of 3,5-diacetyl 1,4-dihydrolutinin was quantified by measuring the absorbance at 412 nm. Formaldehyde concentrations were quantified using a calibration curve.


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RESULTS
 
Growth properties of a cydAB mutant. Optical densities were measured for wild-type and cydAB mutant strains growing in atmospheres containing either 5% or 10% (vol/vol) oxygen (Fig. 1). For both strains, the mean doubling time was approximately 5 h, as determined from the period of exponential growth. Wild-type and cydAB strains grown at 5% oxygen (Fig. 1A) showed slightly but consistently higher final cell densities than those cultured at 10% oxygen (Fig. 1B) (OD, 0.55 and <0.50, respectively). Cultures of wild-type and cydAB strains at 10% (vol/vol) oxygen showed slight decreases in density during the later stages of growth. After 12 h, wild-type cultures incubated at 5% oxygen showed much higher viabilities—over 1.6 x 109 CFU/ml (Fig. 1A)—than did cultures of the cydAB mutant strain, at approximately 7 x 108 CFU/ml. The cell viabilities of wild-type and cydAB strains grown at 10% oxygen were roughly equivalent, at approximately 8 x 108 to 9 x 108 CFU/ml. Despite the small numbers of viable cells recovered from microaerobically grown cultures (after dilution under atmospheric conditions), these results indicate a viability deficiency of the cydAB mutant relative to the wild-type strain at 5% O2. The increasing optical densities of these cultures, yet sharp decline in viability at the end of exponential phase, are attributed in part to the transition of rod-shaped cells into the degenerate coccoid form during the late stages of culture (22). Although a precipitous decline in culture viability was observed in triplicate experiments, we considered verifying the higher viability of wild-type cells by competitive coculture of the two strains. However, there is a remote possibility of transfer of the kanamycin resistance cassette between mutant and wild-type cells, since C. jejuni is naturally competent.


Figure 1
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  		FIG. 1. Cell viabilities and OD600 values (apparent absorbance at 600 nm) over time for wild-type (RKP4818) and cydAB mutant (RKP1341) liquid batch cultures of C. jejuni. Panel A shows data for cells grown at 5% (vol/vol) oxygen, and panel B shows data for cells grown at 10% (vol/vol) oxygen. Viability data are shown as squares, and OD values are shown as circles; the wild-type strain is represented by open symbols, and the cydAB mutant is represented by closed symbols. All points represent the mean values calculated for duplicate experiments. Standard deviations are shown as bars for each point but are often within the size of the data points.

It is most unlikely that insertion into cydAB of the kanamycin resistance cassette would introduce polar effects on downstream genes. Genes downstream of cydAB (Cj0085c and Cj0086c) are on the opposite DNA strand and are unlikely to be affected. Furthermore, they encode proteins (an amino acid racemase and a uracil-DNA glycosylase) that are unlikely to be involved in the phenotypic changes studied here. The kanamycin resistance cassette used bears its own promoter but lacks a transcriptional terminator, and when this cassette is inserted (as described here) with the same transcriptional polarity as the mutated gene, the resulting mutations have been shown to be nonpolar on downstream genes (17). Nevertheless, we attempted to complement the cydAB mutation, which spans cydA and cydB, while recognizing the difficulty of using a complementing fragment (cydA plus cydB) that is large relative to the region that mediates recombination. The general approach for complementation has been described before (14). A 3,210-bp fragment comprising cydAB was cloned into pGEMCWH01 to generate the suicide plasmid pKE123, comprising a wild-type copy of cydAB and, downstream, a selectable chloramphenicol marker flanked by Cj0752 (the insertion site for complementation). This was introduced into competent cells of RKP1341 by electroporation, and transformants were selected on Mueller-Hinton agar with chloramphenicol (10 µg ml–1). In all chloramphenicol-resistant transformants obtained in three attempts, the vector was integrated into the original cydAB locus, not at the second site needed for complementation.

Cytochrome composition of the respiratory chain. Gross changes in cytochrome profile were sought using reduced-minus-oxidized difference spectra at room temperature for wild-type and cydAB whole cells grown at 5 or 10% oxygen. These are shown in Fig. 2A for 10% oxygen and are qualitatively similar. Peaks were present at 426.5, 523, and 552.5 nm (Soret, ß, and {alpha}, respectively). Surprisingly, in view of the presence of a cydAB-like operon in the C. jejuni genome, there were no spectral features attributable to a cytochrome bd-type oxidase, i.e., peaks at about 630 nm (cytochrome d) and 595 nm (high-spin heme b) were absent. Figure 2B shows the CO difference spectra for wild-type and cydAB whole cells grown at 10% oxygen, which exhibit very similar features and signal sizes. Peaks were observed at 411.5, 540.5, and 570.5 nm, while troughs were located at 431 and 551.5 nm. Importantly, the distinctive features of a cytochrome bd-type oxidase (Soret signals of >440 nm and {alpha}-absorbance in the 630- to 640-nm region) were again absent in both wild-type and mutant cells.


Figure 2
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  		FIG. 2. Room-temperature spectrophotometric analysis of wild-type and cydAB strains. (A) Reduced minus oxidized difference spectra for wild-type (solid lines) and cydAB (dashed lines) cells grown at 10% (vol/vol) oxygen. (B) Corresponding CO difference spectra. The protein concentration was 3.0 mg/ml throughout.

The amounts of cytochromes present in wild-type and cydAB cultures incubated at 5% and 10% oxygen were quantified (Table 1). Despite uncertainty in ascribing signal intensities to the overlapping absorbances of cytochromes b ({lambda}max, 560 nm) and c ({lambda}max, 552.5 nm), there were no major differences in cytochrome levels observed between strains under either growth condition. However, cells grown at 10% oxygen contained higher concentrations of cytochromes c and b and CO-binding hemoproteins than did cultures incubated at 5% oxygen. Thus, oxygen tension influences the levels of cytochromes in C. jejuni cells in mid- to late exponential growth, but the consequences of cydAB mutation were not evident by room-temperature difference spectroscopy.


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  		TABLE 1. Cytochrome contents and respiratory activities of wild-type (RKP4818) and cydAB (RKP1341) strains of C. jejuni

To investigate cytochrome levels in older cultures, wild-type and cydAB cells were also incubated microaerobically at 37°C and harvested after 48 h of growth on Mueller-Hinton agar. The amounts of cytochromes present in these older cultures were quantified (data not shown) after subcellular fractionation. The cydAB mutant was consistently deficient in soluble cytochrome c and membrane-bound cytochrome b after 48 h of growth under microaerobic conditions. Cytochrome c was present in the high-speed supernatant fraction of wild-type cells at 1.1 nmol/mg of total protein, compared to approximately 0.7 nmol/mg for a cydAB fraction. Levels of membrane-bound cytochrome b were also halved, from about 0.2 to 0.1 nmol/mg of total protein in wild-type and cydAB membrane fractions, respectively.

In an attempt to express the CydAB-like oxidase in E. coli and to characterize the heme content in an oxidase-deficient background, we introduced a plasmid bearing wild-type cydAB+ (see Materials and Methods) into an E. coli cydAB mutant. However, the transformed cells showed very poor growth and were unsuitable for biochemical characterization.

Respiratory activities reveal a cydAB phenotype. To evaluate the functional consequences of cydAB mutation, wild-type and cydAB cultures were grown to late exponential phase in atmospheres containing 5% and 10% oxygen, and oxygen consumption rates were measured using an oxygen electrode. Wild-type cells grown at 5% or 10% oxygen tension displayed similar initial oxygen uptake rates of >20 nmol oxygen consumed/s/mg of total protein (Table 1). Whole cells of cydAB mutant cultures, however, grown at both 5% and 10% oxygen levels possessed consistently lower initial respiratory rates (<15 nmol O2/s/mg of total protein) (Table 1). These values for the cydAB mutant are higher than the values calculated for the Vmax of the highest-affinity oxidase (see below) and might therefore include contributions to oxygen uptake by systems, perhaps soluble, of very low oxygen affinity, which would not have been detectable in the globin-based assays (see below). Thus, irrespective of the oxygen concentration in the growth atmosphere, the initial rates of respiration of cydAB mutant cells were lower than the wild-type rates.

To assess the cyanide resistance of the cydAB-encoded oxidase, initial formate-supported respiration rates were measured polarographically for cells (grown with 10% oxygen) preincubated in the electrode chamber with 100 µM sodium cyanide. The polarographic traces for the wild-type strain exhibited a rapid oxygen uptake that was maintained for several minutes (see inset in Fig. 3A), with the rate declining by ca. 20% as oxygen was consumed (Fig. 3A). In the presence of cyanide, there was an almost parallel decline in the oxygen consumption rate with time (Fig. 3A), such that the percentage of inhibition of respiration by cyanide was uniform, at 40%, over 2 min, rising to 50% as the oxygen tension in the chamber approached zero, at 2.5 min (Fig. 3C). In marked contrast, respiration of the cydAB mutant was markedly nonlinear (see inset in Fig. 3B), declining by 50% over 2 min, and the initial formate-supported oxygen uptake rate was only 60% (Fig. 3B) of that for the wild-type strain (Fig. 3A). In the presence of 100 µM sodium cyanide, a declining rate of oxygen uptake was again observed, and the calculated percentage of inhibition was higher, at >50% at early time points, declining as oxygen was consumed (Fig. 3D).


Figure 3
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  		FIG. 3. Respiration of C. jejuni and effects of cyanide on wild-type and cydAB whole cells. Respiration rates are plotted as a function of time after the addition of formate to resting cell suspensions for both wild-type (A) and cydAB mutant (B) cells. The insets show typical oxygen electrode traces over the period leading to oxygen depletion in the chamber. In the insets, the vertical bars represent 20% air saturation (approximately 40 µM O2), and the horizontal bars represent 2 min. At the first marker, formate was added, and at the second, sodium dithionite was added. In main panels A and B, respiration rates were plotted for the absence (closed symbols) and presence (open symbols) of 100 µM cyanide, which was added 5 min before formate. The percentage of inhibition by cyanide is shown for wild-type (C) and cydAB mutant (D) cells.

To quantify the inhibition by cyanide of cells grown under different conditions, the cyanide concentration for preincubation of the cells was raised to 125 µM sodium cyanide, and the inhibition of respiration was measured during the first 2 min after formate stimulation in order to observe maximal inhibition (Fig. 3C and D). Table 1 shows the respiratory activities of wild-type and cydAB whole cells grown at 5% and 10% oxygen. Wild-type cells cultured at 10% oxygen displayed the highest cyanide-insensitive oxygen uptake rates (>12 nmol/s/mg), representing 42% inhibition of respiration. However, wild-type cells grown at only 5% oxygen displayed significantly lower rates of oxygen consumption in the presence of cyanide (>5 nmol/s/mg), representing a 75% inhibition of respiration. In contrast, the cydAB mutant was sensitive to 125 µM cyanide when cultured at both 5% and 10% oxygen, showing a decreased respiratory rate, of approximately 4.1 nmol oxygen consumed/s/mg, under both oxygen tensions. Thus, cydAB mutant cells exhibit a clear phenotype, namely, markedly nonlinear O2 uptake (Fig. 3B), decreased oxygen uptake rates, and a markedly increased sensitivity to cyanide when grown at 10% oxygen (Fig. 3; Table 1).

To investigate further the relationship between oxygen, expression of CydAB, and cyanide insensitivity, the oxygen transfer rate to cultures was systematically varied by using 100, 150, or 200 ml of medium in 250-ml baffled flasks. The first-order rate constant (K) for oxygen diffusion into the medium from the microaerobic atmosphere (33) was determined for each volume and found to be 0.43, 0.16, and 0.06 min–1, respectively. Direct evidence for increased expression of cydAB with elevated oxygen availability was obtained by quantification of cydA and cydB transcripts by reverse transcription-PCR (RT-PCR). Cells were grown at K values of 0.43 and 0.06 min–1 and used for RNA extraction and RT-PCR. For both cydA and cydB, triplicate assays showed a 5.0-fold increase in transcript abundance at the higher O2 transfer rate. Further evidence for expression of the cydAB genes in laboratory cultures was obtained in microarray experiments (see Discussion). Exponentially growing cells from each condition were also used to measure formate-supported respiration rates in both the absence and presence of 125 µM KCN. With decreasing oxygen diffusion, the percentage of respiration that was uninhibited by cyanide also decreased, by the following amounts (each measurement is the mean of three separate determinations): 53.9% (K = 0.43 min–1), 47.1% (K = 0.16 min–1), and 39.4% (K = 0.06 min–1). Thus, wild-type cells exhibit increasingly cyanide-resistant respiration when cultured at higher oxygen availability, which we attribute to the cydAB-encoded oxidase because of its lower affinity for oxygen (see below).

The lack of distinctive spectral signals for the CydAB-like oxidase (Fig. 2) precluded quantitation against the background of other c- and b-type cytochromes. We therefore attempted an immunological assay using an antibody directed against the Pseudomonas aeruginosa CioA protein (5), but it was nonspecific and failed to detect bands of the anticipated sizes. We therefore designed and synthesized a peptide representing the putative Q loop (12) of C. jejuni CydAB, namely, NH2-Cys-Ile-Leu-Asn-Pro-Lys-Lys-Thr-Ile-Asp-Asn-Asn-Glu-Ser-Val-Phe-COOH. Antibodies were raised to this peptide as described before (46), but again, nonspecific binding prevented oxidase identification and quantitation in gels containing cell extracts.

Is there an essential role for the cco-encoded oxidase? Attempts were made to construct a mutant strain of C. jejuni which is deficient in the cytochrome cb'-type oxidase, presumed to be encoded by ccoP (Cj1487c), ccoQ (Cj1488c), ccoO (Cj1489c), and ccoN (Cj1490c). A region spanning ccoO and ccoN was amplified by PCR, and a kanamycin resistance cassette was inserted. However, after electroporation, no transformants were obtained, despite repeated attempts.

Determination of the oxygen affinities of the two terminal oxidases of C. jejuni cells, using deoxygenation of oxyleghemoglobin and oxymyoglobin. Early studies of formate oxidation by C. sputorum subsp. bubulus, using an oxygen electrode, reported two oxidase components with Km values of about 4 µM and 1 mM (30), but polarography is not suited to the determination of high affinities. The globin-based technique used here has revealed very-high-affinity oxidases in several studies (8, 10).

The visible absorption spectrum of soybean oxyleghemoglobin possesses maxima in the {alpha} and ß regions at 540 and 575 nm, whereas the deoxygenated or reduced form is characterized by a single peak at 557 nm. Similarly, the spectrum of horse skeletal muscle oxymyoglobin possesses maxima at 544 nm and 582 nm, whereas the deoxygenated form shows a single peak at 558 nm (for these spectra, see reference 9). Therefore, for leghemoglobin, the absorbance change between 575 nm and 560 nm (an isosbestic point) was measured in dual-wavelength mode to follow conversion from the oxy- to the deoxy- form as a result of bacterial oxygen consumption. Deoxygenation of oxymyoglobin was monitored at 565 nm to 582 nm (an isosbestic point). The rates of respiration of C. jejuni whole cells at low oxygen concentrations were measured by monitoring, in separate experiments, the deoxygenation of oxyleghemoglobin (range, 0.003 to 0.3 µM O2) and oxymyoglobin (range, 0.3 to 10 µM O2).

The addition of cells to nitrogen-sparged buffer containing oxyleghemoglobin resulted in an instantaneous drop in absorbance, which was attributed to an optical rather than biological effect (Fig. 4A, letter "b"). Absorbance was stable while the cells respired, using the small amount of oxygen present in the buffer. When the buffer became oxygen depleted, the globin underwent deoxygenation as the cells continued to respire, observed as a decrease in {Delta}A (Fig. 4A, letter "c"). Deoxygenation of oxyleghemoglobin by wild-type cells allowed calculation of the total dissolved oxygen concentration with time (Fig. 4B). The Eadie-Hofstee plot of these data (Fig. 4C, closed squares) clearly reveals a single component with a Km value of 40 nM. Vmax was found to be 5.4 nmol/mg/s. Similar experiments with leghemoglobin as the oxygen donor for the formate-supported respiration of cydAB mutant cells (Fig. 4C, open squares) again showed a single high-affinity component with a Km value of 42 nM (apparent Vmax, 8.93 nmol/mg/s). The presence of this high-affinity component in both wild-type and cydAB whole cells allowed us to unambiguously assign its activity to the cb'-type cytochrome c oxidase.


Figure 4
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  		FIG. 4. Deoxygenation of oxyleghemoglobin by C. jejuni whole cells and determination of reactivity of the high-affinity oxidase. Panel A shows the deoxygenation of oxyleghemoglobin by wild-type whole cells. At time zero, the cuvette contained 17 µM oxyleghemoglobin in buffer, previously sparged with nitrogen. Formate (5 mM) was added (a), followed by whole cells ({omega} = 0.35 mg) (b), whose turbidity produced a downward deflection in {Delta}A. Between times b and c, cells consumed free oxygen in solution, but this did not cause deoxygenation of the globin. At time c, after near exhaustion of free oxygen, spontaneous deoxygenation of the globin occurred. Excess sodium dithionite was added to complete deoxygenation (d). Panel B shows total oxygen against time in the presence of leghemoglobin and wild-type cells; note that the timescale includes only that part of the deoxygenation trace (A) that reveals globin deoxygenation. Panel C shows Eadie-Hofstee plots for deoxygenation of oxyleghemoglobin by wild-type (closed squares) and cydAB (open squares) whole cells.

Experiments with oxymyoglobin as the oxygen source were also performed to study oxidases of lower affinity. Figure 5 shows the declining oxygen concentration with time for wild-type (closed squares) and mutant (open squares) cells. In the case of wild-type cells, the oxygen concentration fell linearly until it reached approximately 5 nM. Only at lower oxygen concentrations did the rate of respiration decline as oxygen was consumed (i.e., the oxygen-time plot in Fig. 5 became nonlinear), so only the last 15 time points spanning this region of oxygen dependence were analyzed further. The resulting Eadie-Hofstee plot (not shown) followed a monophasic pattern, revealing a single low-affinity component with a Km value of 0.83 µM and a Vmax of 20 nmol/mg/s. In the case of the cydAB mutant (open symbols in Fig. 5), the oxygen concentration declined linearly with time, and no oxygen-dependent phase at low oxygen concentrations was observed. There was therefore no evidence in cydAB mutant cells for a component with an oxygen affinity in the range covered by myoglobin (0.3 to 10 µM), and we attribute the low-affinity activity in wild-type cells to the CydAB-type oxidase. Table 2 summarizes the Km and Vmax values for C. jejuni wild-type and cydAB whole cells calculated from the deoxygenation of oxyleghemoglobin and oxymyoglobin.


Figure 5
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  		FIG. 5. Deoxygenation of oxymyoglobin by C. jejuni cells and determination of reactivity of the low-affinity oxidase. Total oxygen was plotted against time in the presence of cydAB (open squares) or wild-type (closed squares) cells. Notice the presence of a low-affinity component (final 15 data points) in the wild-type experiment only; these were smoothed according to the line of best fit (y = 71.679e–0.1012x; R2 = 0.9973) (not shown) and analyzed using an Eadie-Hofstee plot (see text).


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  		TABLE 2. Oxygen affinities of C. jejuni wild-type and cydAB whole cells measured from the deoxygenation kinetics of oxyleghemoglobin and oxymyoglobin

Analysis of the respiratory activities of C. jejuni membrane fractions. Membranes were capable of only partially deoxygenating oxyleghemoglobin, and it was not possible to produce full deoxygenation curves for data analysis. The formate-supported respiration of membranes measured in an O2 electrode is shown in Fig. 6. Figure 6A and C show measurements of the respiratory activity of wild-type membranes, while corresponding measurements made using cydAB membranes are shown in panels B and D. At the start of each trace, membranes in buffer were supplemented with formate (final concentration, 5 mM) at the time marked by arrow b on each trace. In each panel, at the time marked by arrow c, excess dithionite was added to show the extent of reduction of oxygen achieved in each case. Wild-type membranes exhibited a mean oxygen consumption rate of 5.7 nmol/s/mg (n = 6; standard deviation [SD] = 0.069), while cydAB membranes respired at a rate of 1.2 nmol/s/mg (n = 4; SD = 0.023). The result for the wild type is similar to the value of 3.8 (±0.16) nmol/s/mg calculated (18) for respiration of wild-type membranes, also using 5 mM formate as the electron donor. Oxygen uptake by wild-type (Fig. 6A) and cydAB membranes (Fig. 6B) typically reached a plateau at approximately 15% (33 µM) oxygen saturation and was unsuitable for oxygen affinity measurements. The inset in Fig. 6A shows the partial deoxygenation of oxyleghemoglobin. We considered the possibility that the failure to deoxygenate fully aerated buffer in the oxygen electrode was a result of the loss of soluble components required for electron transfer from formate to O2. Indeed, membranes prepared from glucose-grown E. coli are incapable of catalyzing ATP- and succinate-driven NAD+ reduction unless soluble fractions from broken cells are added, revealing the loss of dehydrogenases (36). Therefore, a portion of fresh cytoplasmic fraction (200 µl) was added to the electrode chamber before the addition of formate, as shown by arrows a in Fig. 6C and D. No stimulation of respiratory activity was observed.


Figure 6
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  		FIG. 6. Formate-supported respiration by membranes from wild-type and cydAB cells grown in liquid batch culture at 10% oxygen. Measurements were made with an oxygen electrode (A to D) or by following the partial deoxygenation of oxyleghemoglobin (inset in panel A). Panels A and C show oxygen consumption by membranes from wild-type cells. For panels A to D, 5 mM formate was added to stimulate the uptake of oxygen at time b, and dithionite was added at time c. In each, the vertical [oxygen] bar represents 220 µM, and the horizontal time bar represents 34, 27, 33, and 27 min (panels A, B, C, and D, respectively). For panels C and D only, 200 µl of the soluble fraction was added at time a ({omega} = 0.18 mg and 0.36 mg, respectively). For the inset, at time zero, the cuvette contained oxyleghemoglobin (17 µM) in buffer previously sparged with nitrogen. Formate (5 mM) was added at time a, membranes ({omega} = 0.53 mg) were added at time b, and sodium dithionite was added at time c.

Ligand-binding reactions of the terminal oxidases in C. jejuni studied using low-temperature photodissociation spectrophotometry. To record such spectra, cells were reduced, incubated with CO, transferred to the cryogenic apparatus of a dual-wavelength spectrophotometer, and photolyzed in situ. Figure 7 (top spectrum, dashed line) shows, for reference purposes, an inverted CO difference [i.e., reduced minus (reduced plus CO)] spectrum for wild-type C. jejuni cells, which would be expected to resemble the photodissociation spectrum. However, the attempted photodissociation spectrum recorded using wild-type whole cells at –120°C (Fig. 7A, lower trace) shows only a minor peak at 403 nm, with troughs at 417 and 551.5 nm. It is likely that b- and c-type hemes are responsible for these features, but the redox and ligation states are unclear. The most striking and puzzling feature of these spectra is the absence of any peak in the Soret region, corresponding to unligated ferrous heme, at approximately 430 nm, unlike the spectra recorded for cytochrome cb' oxidase-containing Bradyrhizobium japonicum (51). The 403-nm signal is also present in cytoplasmic fractions from wild-type cells (data not shown) and therefore may be due to a c-type heme capable of interaction with CO, as in the cytochrome c-containing CcoP subunits of the cytochrome cb' oxidases of B. japonicum and Pseudomonas stutzeri (32). The trough at approximately 415 to 417 nm was observed in the photodissociation spectra recorded for wild-type membranes and cytoplasmic fractions (not shown) and may represent both b- and c-type cytochromes. The 417-nm position of the minima in anoxic photodissociation spectra of C. jejuni differs from the wavelength of 427 to 429 nm recorded for the presence of a trough in the anoxic photodissociation spectra of B. japonicum (51) attributed to cytochrome cb'. The visible regions in spectra recorded for wild-type membranes and cytoplasmic fractions of C. jejuni (not shown) show features near 552 nm, which are presumably due to c-type hemes. The photodissociation spectra obtained for cydAB whole cells, membranes, and soluble fractions were broadly similar to those observed in the case of wild-type C. jejuni, suggesting that the "cytochrome bd-like oxidase" was not a major contributor to the overall photodissociation signals. No temperature-dependent CO recombination was observed over the range of –60 to –120°C (data not shown). In conclusion, photodissociation spectroscopy showed features of neither a bd-type oxidase nor an oxidase whose CO complex could be photodissociated to give an observable reduced species within the scan times employed here.


Figure 7
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  		FIG. 7. Low-temperature photodissociation spectroscopy of reduced, CO-ligated C. jejuni cells. Panel A shows a comparison of a typical photodissociation spectrum (photolyzed minus CO-ligated spectrum, –120°C) (bottom) and the inverted CO difference spectrum (reduced minus CO-ligated spectrum, 22°C) (top). Cell concentrations were 5 and 3 mg/ml, respectively. Panel B compares the photodissociation spectrum (bold, continuous line) and an oxidized minus CO-ligated difference spectrum (dashed line), both at –120°C and 5 mg/ml. All spectra were recorded in dual-wavelength mode, using a 500-nm reference wavelength.

Carbon monoxide reduction in C. jejuni? The spectroscopic data in Fig. 7 might be explained by the cytochrome cb' oxidase of C. jejuni having CO reductase activity, as spectra for both wild-type and cydAB strains recorded after photolysis appear to be in an oxidized rather than reduced state. Indeed, an oxidized-minus-(reduced plus CO) spectrum superimposed over the photodissociation spectrum of wild-type whole cells (Fig. 7B) reveals similarities between the oxidized and photodissociated states. This suggests that the cytochrome cb' oxidase possesses photolysis-dependent CO reductase activity that results in oxidation of redox proteins. Unusual CO reductase activity by which CO is converted to formaldehyde has been observed in the bb' oxidase of Pseudomonas nautica (2), in a reaction that is dependent on photolysis. To determine whether the cytochrome bb' oxidase of C. jejuni is capable of catalyzing CO reduction, formaldehyde, presumed to be generated by oxidase-mediated CO reduction, was assayed in whole cells and membranes of C. jejuni, but no significant levels were detectable in any fraction.


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DISCUSSION
 
This paper reports the most detailed studies to date of respiratory oxidases in C. jejuni. The cydAB-encoded oxidase is not essential for growth under any condition tested, despite cydAB and cydDC mutants of E. coli and other bacteria being hypersensitive to zinc ions, cyanide, Fe(III) chelators, and protonophores (35). However, the C. jejuni cydAB-encoded oxidase improves the survival of C. jejuni under microaerobic conditions (Fig. 1). The atypical response of C. jejuni to stationary phase, in which cell viability declines precipitously, has been reported before (22). Reduced capacities for growth and stationary-phase survival have also been observed for cydAB mutants of other bacteria, including E. coli (44) and Azotobacter vinelandii (13). The c- and b-type cytochromes (18, 24) are not significantly different in wild-type and cydAB strains, but no features attributable to components of the presumed cytochrome bd-type oxidase were detected, whether assayed by (i) reduced-minus-oxidized room-temperature difference spectroscopy, (ii) CO difference spectroscopy, or (iii) CO photodissociation spectroscopy at subzero temperatures. Thus, the high-spin hemes d and b595 characteristic of cytochromes bd are absent from C. jejuni. Interestingly, the cioAB genes of Pseudomonas aeruginosa also encode peptides homologous to the two subunits of bacterial cytochromes bd, but here too, the cells do not display characteristic cytochrome bd features (7). Therefore, the CydAB-type terminal oxidase of C. jejuni (31) should be renamed CioAB, in deference to the P. aeruginosa example, the first oxidase shown (6) to be encoded by cydAB-like genes yet lacking the characteristic signals of cytochromes b558, b595, and d. It seems likely that the cioAB-encoded oxidases of P. aeruginosa and C. jejuni belong to the same family of poorly characterized enzymes in which the three hemes of classical cytochrome bd, i.e., hemes b558, b595, and d, are replaced by other (as yet unknown) redox centers. It is known that oxidases can display promiscuity with respect to the type of heme incorporated at the active site (40).

The operation of cyanide-sensitive and cyanide-insensitive systems in campylobacters was reported earlier (24). Typical cytochrome bd-type oxidases confer resistance to cyanide, including those of E. coli (41) and A. vinelandii (19). However, cyanide resistance does not necessarily require the presence of cytochrome d (1). Indeed, the KCN-insensitive oxidase of the respiratory chain of P. aeruginosa does not contain cytochrome d (6), yet membranes prepared from a cio mutant strain exhibit lowered oxygen consumption rates compared to those from the wild type in the presence of 1 mM KCN (7), and a cio mutant exhibits a MIC for KCN that is two- to fourfold lower than that for the wild-type strain (55). Cytochrome cb' oxidases are typically more sensitive to the inhibitory effects of cyanide than are CydAB-type oxidases (e.g., see reference 28).

In view of the microaerophilic lifestyle of C. jejuni, the oxygen reactivities of the oxidases are of special interest. Earlier studies of formate oxidation by C. sputorum subsp. bubulus identified two components with Km values of 4 µM and 1 mM (30). However, the oxygen electrode used would be incapable of revealing high-affinity oxidases such as the ccoNOQP-encoded oxidase (31), believed to be of the cytochrome cb' type (cbb3). Such oxidases were first identified in Bradyrhizobium japonicum (38) and subsequently found in pathogenic bacteria, including Helicobacter pylori (28). It is frequently stated that cytochrome cb' oxidases appear to perform a specialized role in bacterial microaerobic respiration (32), but only a few previous studies have described measurements made with an appropriately sensitive method, although the related FixNOQP oxidase of B. japonicum has been assigned an extremely low Km value of 7 nM (39) by globin deoxygenation methods. The present leghemoglobin analyses suggest that the Vmax for the respiratory chain in wild-type cells is lower than the Vmax for cioAB mutant cells when expressed per mg of cell protein. This apparently surprising result may have several explanations. First, mutation of cioAB may result in up-regulation of synthesis of the high-affinity oxidase, which is not readily detectable in the complex CO spectra. Second, mutation of the cyanide-insensitive oxidase might divert electron flow to the high-affinity oxidase, supporting higher electron flux rates, particularly at the low oxygen tensions employed in these experiments.

In terms of its oxygen reactivity, C. jejuni CioAB resembles the cydAB-encoded oxidase of Azotobacter vinelandii (Km value of 4.5 to 5.7 µM) (9) rather than the high-affinity cytochrome bd of E. coli (Km, 4.5 nM) (8). It is tempting to speculate that C. jejuni CioAB has a special role in oxygen detoxification, as proposed for A. vinelandii CydAB, where cytochrome bd protects the oxygen-labile nitrogenase, allowing aerotolerant nitrogen fixation (23). In the case of C. jejuni, the role of CioAB may be in lowering oxygen levels and maintaining microaerobic conditions.

The possession of two or more terminal oxidases with different properties (such as oxygen affinity and inhibitor resistance, as exemplified by C. jejuni) is a common theme in bacterial physiology (35). In this study, cioAB expression was shown to increase fivefold under O2-replete laboratory conditions, consistent with the lower O2 affinity of the oxidase and the increased cyanide resistance of cultures grown under these conditions. The relative importance of the two oxidases in C. jejuni physiology in vivo is unclear, but two microarray studies are of interest in light of the oxygen affinities reported here. Transcriptional profiling of C. jejuni during colonization of the chick cecum showed that the cco genes—shown in the present study to encode the very-high-affinity oxidase—were up-regulated about fourfold (53), suggesting a microaerobic environmental niche. However, expression profiling to determine gene expression in C. jejuni recovered from rabbit ileal loops (compared with bacteria grown in vitro to mid-logarithmic phase) (47) showed that cioAB expression was elevated 350-fold in vivo compared to that in vitro. The authors concluded that the in vivo transcriptome is consistent with an oxygen-limited environment but assumed that the C. jejuni CydAB-type oxidase has a high affinity for oxygen, whereas our results clearly show that this oxidase has a low oxygen affinity in C. jejuni. Furthermore, elevated expression of cydAB in the ileal loop was accompanied by up-regulation of fdh genes, encoding formate dehydrogenase—which has been shown in the present work to support a robust oxygen-consuming activity—and by down-regulation of all genes encoding reductases involved in electron transfer to oxidants other than oxygen, i.e., fumarate, nitrate, nitrite, and N- or O-oxides (43). These microarray results suggest that there is an aerobic environment in ileal loops.

Despite the reported increase in cioAB expression in vivo (47), there is clear evidence that cioAB is also expressed in vitro. First, we report here that RT-PCR readily measures cioAB transcription and demonstrates increased transcription under oxygen-replete conditions. Second, in unpublished microarray profiling of C. jejuni cells grown in vitro (C. E. Monk and R. K. Poole, unpublished data), the cioAB transcripts were detectable, with spot intensities (after background correction) on the same order as, for example, the transcripts of ctb, encoding the truncated hemoglobin of C. jejuni, and with intensities greater than the transcripts of cgb, encoding the NO-detoxifying hemoglobin, under noninducing conditions (49). The spectroscopic invisibility of the oxidase in comparison of the wild-type and mutant strains (Fig. 2) does not preclude a functional role for CioAB in O2 consumption. Consider the situation where CioAB makes only a 5% contribution to the CO difference spectrum in Fig. 2B and is therefore regarded as undetectable. The absorption coefficient for this oxidase is unknown, but if we assume a value of 91 mM–1 cm–1, as for mitochondrial cytochrome c oxidase (cytochrome a3) (4), the concentration of oxidase represented by the CO difference spectrum is 0.08 nmol/ml or 0.027 nmol/mg protein. The total respiration rate of intact cells is on the order of 15 nmol oxygen consumed/mg protein/s (Tables 1 and 2), and assuming the operation of only the CioAB-type oxidase, it would require a turnover number of 550 s–1. An established literature value for the turnover number of the mitochondrial oxidase (both for the isolated enzyme and in situ) is 400 s–1 (50). That is, an oxidase with typical spectroscopic and kinetic properties that contributes only 5% to the visible spectrum could account for >70% of measured respiration rates.

The CO difference spectra (Fig. 2B) show a strong absorbance minimum at 431 nm, which is similar to the trough assigned to cytochrome o in E. coli (37), but the 411.5-nm peak is considerably shifted toward blue from the position expected. Furthermore, signals in the {alpha}/ß regions of Fig. 2B are indicative of low-spin CO-binding species (52), not cytochrome o (37). However, the most persuasive evidence for the lack of cytochrome o-like ligand-binding behavior comes from the anoxic photodissociation spectrum, in which all the characteristic features of the cytochrome o spectrum are lacking (Fig. 7). The ligand-binding and possibly CO-reductive properties of the terminal oxidases of C. jejuni require further investigation, particularly given the finding that the primary structures of the major subunits of the "cbb3 type" indicate that they belong to a separate group within the cytochrome cbb3 family (45).

In conclusion, we have identified two terminal oxidases with significantly different catalytic capabilities in the aerobic respiratory chain of C. jejuni. The cyanide-insensitive CioAB-type oxidase, the product of the so-called cydAB genes, is of low O2 affinity (Km = 0.8 µM). It is dispensable for microaerobic growth and respiration but required for optimal microaerobic survival, and gene expression is increased at higher O2 provision rates. In contrast to earlier assumptions (45), we found no evidence that this oxidase is of the cytochrome bd type. The cytochrome cb' oxidase has a typical high affinity for oxygen, displaying a Km value of 40 nM. This cyanide-sensitive oxidase may act as the dominant oxidase for the microaerobic growth of C. jejuni, since we were unable to construct a mutant deficient in cytochrome cb'. The reactions of the atypical CioAB-type oxidase of C. jejuni with ligands and its possible CO reductase activity also require further study.


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ACKNOWLEDGMENTS
 
This study was supported by BBSRC grants D18084 and BFP11346 to R.K.P. and S.F.P. and by a BBSRC studentship to R.J.J.

We are grateful to Colin Jones, Julian Ketley, Jo Cox (all from University of Leicester), and Claire Monk (The University of Sheffield) for communicating unpublished results, Huw Williams (Imperial College) for valuable discussions and the CioA antibody, Mark Johnson for technical support, David Kelly (The University of Sheffield) for useful suggestions, Arthur Moir and Julie Scholes (The University of Sheffield) for peptide synthesis and RT-PCR access, respectively, and F. J. Bergersen (CSIRO, Canberra, Australia) for the gift of leghemoglobin.


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FOOTNOTES
 
* Corresponding author. Mailing address: Department of Molecular Biology and Biotechnology, The University of Sheffield, Western Bank, Sheffield S10 2TN, United Kingdom. Phone: 44-114-222-4447. Fax: 44-114-222-2800. E-mail: r.poole{at}sheffield.ac.uk. Back

{triangledown} Published ahead of print on 15 December 2006. Back

§ Present address: School of Health and Related Research, The University of Sheffield, Regent Court, Sheffield S1 4DA, United Kingdom. Back


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Journal of Bacteriology, March 2007, p. 1604-1615, Vol. 189, No. 5
0021-9193/07/$08.00+0     doi:10.1128/JB.00897-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.



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