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Journal of Bacteriology, April 2007, p. 2618-2628, Vol. 189, No. 7
0021-9193/07/$08.00+0 doi:10.1128/JB.01905-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Karen A. Vigeant,1,
,
Laura D. Tatar,1 and
Miguel A. Valvano1,2*
Infectious Diseases Research Group, Siebens-Drake Medical Research Institute, Departments of Microbiology and Immunology,1 Medicine, University of Western Ontario, London, Ontario N6A 5C1, Canada2
Received 18 December 2006/ Accepted 15 January 2007
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O antigens are polysaccharides consisting of repeating oligosaccharide units (O units). The biosynthesis of an O unit starts on the cytosolic face of the plasma membrane with the formation of a sugar phosphodiester linkage with undecaprenyl phosphate (Und-P). After the initiation reaction, additional sugars are incorporated to complete the O unit in reactions catalyzed by specific glycosyltransferases, which are either soluble cytosolic enzymes or peripheral membrane proteins associated with the plasma membrane by ionic interactions (43, 52, 56).
The initiation reaction is catalyzed by two different classes of integral membrane proteins (52). One class, the polyisoprenyl-phosphate N-acetylhexosamine-1-phosphate transferases (PNPTs), comprises proteins that are found in both prokaryotes and eukaryotes (14, 25, 42, 52). The prototype bacterial PNPT is WecA, a tunicamycin-sensitive UDP- N-acetylglucosamine (GlcNAc):Und-P GlcNAc-1-P transferase (37). WecA initiates O-unit synthesis in many Escherichia coli O types (1, 45, 58), Klebsiella pneumoniae O1 (11), Shigella dysenteriae (22), Shigella flexneri (58), and Salmonella enterica serovar Borreze (21), and it is also required for synthesis of the enterobacterial common antigen (38). Prokaryotic and eukaryotic PNPTs exhibit significant amino acid sequence similarity in certain regions of the protein (3, 4), underscoring the functional conservation of this class and presumably a common enzymatic mechanism (14, 28, 42, 52). Eukaryotic PNPTs are in the endoplasmic reticulum membrane, where they catalyze the transfer of GlcNAc-1-P to dolichol phosphate, the first step in N-linked glycoprotein biosynthesis (25). Bacterial members of this class, such as WecA, MraY, WbpL, and WbcO, can utilize different N-acetylhexosamine substrates, and they also differ in their susceptibilities to selective inhibitors (6, 42). The other class of prenyl sugar transferases includes the polyisoprenyl-phosphate hexose-1-phosphate transferases, and the prototype is WbaP (formerly RfbP) of S. enterica, in which the initiating sugar is galactose (54). The polyisoprenyl-phosphate hexose-1-phosphate transferases are unique to prokaryotes and are unrelated to PNTPs.
The WecA protein has not been purified to homogeneity. However, both biochemical information and genetic information support the hypothesis that its role involves the transfer of GlcNAc-1-P from UDP-GlcNAc to Und-P to form an Und-P-P-GlcNAc intermediate (37, 46). WecA can also transfer N-acetylgalactosamine-1-phosphate, as it is also essential for the synthesis of O antigens containing N-acetylgalactosamine (55). Furthermore, this enzyme has specificity for Und-P and cannot function with the eukaryotic lipid carrier dolichol phosphate (46). A predicted topological model for WecA suggests that there are 11 transmembrane segments, five cytosolic loops, and five periplasmic loops (5). We have previously identified highly conserved aspartic acids in two predicted cytosolic loops of WecA: Asp90 and Asp91 in cytosolic loop 2 and Asp156 and Asp159 in cytosolic loop 3 (4). Replacement of these residues with other amino acids affected the function of WecA, as demonstrated by the lack of in vitro enzymatic activity or reduced in vitro enzymatic activity of the mutated proteins, which could not mediate O-antigen LPS production in vivo (4). Aspartic acids have nucleophilic side chains, which may be involved in binding divalent metal ions (most commonly Mn2+ or Mg2+) or in catalysis (23, 47, 59), as shown previously for other glycosyl and prenyl transferases (10, 33, 34, 50). We hypothesized that Asp90, Asp91, Asp156, and Asp159 are important for the catalytic activity of WecA (4). In this study, we characterized in more detail the functional roles of the conserved aspartic acids of WecA. Together, the in vivo activities of parental WecA and mutated WecA (having conservative amino acid replacements) and the steady-state kinetic parameters of these proteins demonstrated that Asp90/Asp91 and Asp156/Asp159 define two distinct functional regions in the protein. A refined topological map of WecA, based on the substituted cysteine accessibility method (8), conclusively demonstrated that Asp90/Asp91 and Asp156/Asp159, as well a critical histidine in the predicted cytosolic loop 5, His278 (3), are exposed to the cytosolic side of the plasma membrane. We also found that the C terminus of WecA is exposed to the cytosol and provide evidence suggesting that WecA localizes in discrete regions of the bacterial membrane.
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was used for plasmid maintenance and recovery after mutagenesis. Bacteria were cultured at 37°C in Luria-Bertani (LB) medium supplemented with ampicillin (100 µg/ml), tetracycline (20 µg/ml), and 0.2% (wt/vol) arabinose, when appropriate. Transformation was performed by either the calcium chloride method or electroporation, as described elsewhere (12, 15). All biochemical reagents were purchased from Sigma (St. Louis, MO), unless indicated otherwise. Restriction endonucleases, T4 DNA ligase, and associated buffers were purchased from Roche Molecular Biochemicals (Dorval, Quebec, Canada). |
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TABLE 1. Characteristics of the bacterial strains and plasmids used in this study
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Membrane preparation. Bacterial cultures were grown overnight in 5 ml of LB medium, diluted to obtain an initial optical density at 600 nm (OD600) of 0.02, and incubated at 37°C for 2 h until the OD600 was 0.5. At this point, arabinose was added to a final concentration of 0.2%, and cells were incubated for an additional 2 h until the OD600 was between 0.8 and 1.0. Cells were then harvested by centrifugation at 10,000 x g for 10 min at 4°C, and each resulting pellet was washed, resuspended in 0.9% (vol/vol) NaCl, and centrifuged again as described above. The bacterial pellet was suspended in 50 mM Tris acetate (pH 8.5), and the suspension was lysed using a French press. Insoluble debris was removed by centrifugation (15,000 x g for 15 min at 4°C), and the clear supernatant was centrifuged at 30,000 x g for 25 min at 4°C. The pellet, containing total membranes, was suspended in 40 mM Tris acetate (pH 8.5) and frozen at 80°C until it was used.
LPS analysis. LPS was extracted as described previously (32). Briefly, cells from overnight plate cultures were suspended in a lysis buffer containing proteinase K, which was followed by hot phenol extraction and subsequent extraction of the aqueous phase with ether. LPS was resolved by electrophoresis in 14% polyacrylamide gels using a Tricine-sodium dodecyl sulfate (SDS) system and was visualized by silver staining (30). The concentration of LPS was determined by the keto-deoxyoctulosonic (KDO) assay (40).
Transferase assay and kinetic analysis. The reaction mixture used for the standard in vitro transferase assay (modified from the mixture used by McGrath and Osborn [35]) contained 40 µg total protein membrane fraction (providing the enzyme and the endogenous Und-P acceptor), 0.2 mM MnCl2 or 1 mM MgCl2, and 131.4 pmol of radiolabeled UDP-N-acetyl-[14C]glucosamine (225 mCi/mmol) in 250 µl of buffer (5 mM Tris acetate [pH 8.5]). After incubation at 37°C for 15 min, the lipid-associated material was extracted twice with 150 µl of 1-butanol. The combined 1-butanol extracts were washed once with 300 µl of distilled water. The radioactive count for a 150-µl aliquot of the 1-butanol fraction was determined with a Beckman liquid scintillation counter (Beckman Coulter Canada Inc., Mississauga, Ontario, Canada). Radioactive counts were normalized for the background value. To determine the divalent metal ion requirements, incorporation of UDP-GlcNAc into the lipid fraction was established using various concentrations of Mg2+ and Mn2+ (0 to 3 mM) with a fixed amount of UDP-GlcNAc (131.4 pmol). The kinetic parameters for UDP-GlcNAc were determined with excess Mg2+ or Mn2+ and amounts of UDP-GlcNAc ranging from 8.76 to 175.2 pmol. Data were analyzed by nonlinear regression using GraphPad Prism v.4 and the Michaelis-Menten equation. One unit of enzyme activity was defined as 103 pmol GlcNAc incorporated into the lipid fraction per min per mg of total protein. In some experiments, product conversion was examined by thin-layer chromatography (TLC). To do this, 200 µl of the 1-butanol fraction was dried in a microcentrifuge tube and resuspended in 20 µl chloroform-methanol (2:1), and 4-µl portions were spotted onto a Whatman silica gel (PE SIL G) plate, which was developed in a solvent containing di-isobutylketone, acetic acid, and water (80:50:10), as described previously (19). After drying and overnight exposure of the plate to a PhosphorImager screen, product formation was detected and quantified with a PhosphorImager (Storm 840; Amersham Biosciences) equipped with Image-Quant software. Purified Und-P and Und-P-P were obtained from the Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.
Preparation of cells and vesicles for labeling with sulfhydryl-reactive reagents.
LB medium (500 ml) supplemented with 100 µg/ml ampicillin and 20 µg/ml tetracycline was inoculated with an overnight culture of strain MV501 cells containing the appropriate plasmids. The cells were grown and protein expression was induced with arabinose as described above. At the end of the induction period the culture was split into two 250-ml aliquots for orientation-specific labeling. Bacteria were harvested by centrifugation at 3,300 x g for 15 min, washed twice with 0.1 M sodium phosphate buffer (pH 7.5), and resuspended in 25 ml of buffer. One aliquot was pretreated with 0.5 mM [2-(trimethylammonium)ethyl] methanethiosulfonate bromide (MTSET) (Toronto Research Chemicals Inc., Toronto, Ontario, Canada) for 10 min at room temperature. Both aliquots were then treated with 0.5 mM N
-(3-maleimidylpropionyl)biocytin (biotin maleimide) (Molecular Probes, Portland, OR) for 10 min at room temperature, with occasional shaking. The reaction was terminated by addition of 500 µl of 2% (vol/vol) 2-mercaptoethanol in 0.1 M sodium phosphate buffer. Treated cultures were then washed twice with 20 ml phosphate buffer and lysed with two treatments at 15,000 lb/in2 using a French press. The lysates were centrifuged at 39,000 x g for 15 min, and each supernatant was pelleted by centrifugation at 280,000 x g for 30 min. The pellet, containing total membranes, was resuspended in 1 ml of 0.1 M sodium phosphate buffer, and 50 µl was solubilized with 0.5% Triton X-100 in 0.1 M sodium phosphate buffer with 8 M urea (pH 7.8) for 2 h.
Purification of His-tagged protein. Solubilized samples were centrifuged at 39,000 x g for 15 min to remove insoluble material. One hundred microliters of cobalt-bound chelating Sepharose Fast Flow resin (GE Healthcare), equilibrated with wash buffer (0.1 M sodium phosphate, 300 mM NaCl, 100 mM imidazole, 8 M urea; pH 7.8) was mixed with the supernatant in a microcentrifuge tube. After 1 h of gentle mixing at room temperature, the resin was centrifuged at 1,000 x g for 1 min, the supernatant was aspirated, and the protein-loaded column was washed three times with 1 ml of wash buffer. WecA was eluted by incubating the resin with 100 µl of elution buffer (0.1 M sodium phosphate, 300 mM NaCl, 300 mM imidazole, 8 M urea, 0.5% Triton X-100; pH 7.8) for 15 min.
Gel electrophoresis and analysis. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (PAGE), protein transfer to nitrocellulose membranes, and immunoblotting with the FLAG M2 monoclonal antibody were performed as described previously (4), except that the reacting bands were detected by fluorescence with an Odyssey infrared imaging system (Li-cor Biosciences, Lincoln, NE) using Alexa Fluor 680 goat anti-mouse secondary antibody (Rockland Immunochemicals, Gilbertsville, PA). Various amounts (0.8 to 3.2 ng) of C-terminally FLAG-tagged bacterial alkaline phosphatase (BAP-FLAG) were loaded on the same gels as standards for quantitative immunoblotting (41). The pixel density of the gel bands was analyzed with ImageJ software (W. S. Rasband, U.S. National Institutes of Health, Bethesda, MD; http://rsb.info.nih.gov/ij/). Biotinylated proteins were detected by incubation with horseradish peroxidase-linked streptavidin and chemiluminescence using the BM chemiluminescence blotting substrate (Roche Diagnostics), as recommended by the manufacturer.
Microscopy.
An overnight culture of E. coli DH5
cells containing pLDT29, which expresses WecAGFP under control of the arabinose-inducible PBAD promoter (Table 1), was diluted in LB medium to obtain an OD600 of 0.1, and protein expression was induced with arabinose as described above. After 3 h of induction, the culture was placed on ice for 1 to 2 h to facilitate GFP folding. Similar experiments were performed without arabinose in the growth medium. Bacteria were visualized with no fixation using an Axioscope 2 (Carl Zeiss) microscope with an x100/1.3 numerical aperture Plan-Neofluor objective and a 50-W mercury arc lamp with a GFP band pass emission filter set (Chroma Technology) with excitation at 470 ± 20 nm and emission at 525 ± 25 nm. Images were digitally processed using the Northern Eclipse imaging analysis software (version 6.0; Empix Imaging, Mississauga, Ontario, Canada).
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FIG. 1. Expression of parental WecA and mutant protein derivatives. Total membranes were prepared from strain MV501 (VW187 wecA::Tn10) transformed with various plasmids containing several versions of wecA (Table 1), as follows: lane 1, WecA(pKV1) (wecAFLAG-5xHis); lane 2, pBAD-His vector control; lane 3, D90E protein, pKV2; lane 4, D90N protein, pKV3; lane 5, D91E protein, pKV4; lane 6, D91N protein, pKV5; lane 7, D159E protein, pKV10; lane 8, D159N protein, pKV11. Each lane contained 4 µg of protein. Membranes were transferred to a nitrocellulose membrane and reacted with anti-FLAG monoclonal antibodies. The molecular mass standards were myosin (206 kDa), ß-galactosidase (119 kDa), bovine serum albumin (91 kDa), ovalbumin (51 kDa), and carbonic anhydrase (34.7 kDa).
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FIG. 2. Complementation of O7 LPS synthesis in strain MV501 (VW187 wecA::Tn10) by parental WecA and mutant derivatives. LPS samples were obtained from E. coli MV501 (VW187 wecA::Tn10) transformed with various plasmids. Lane 1, pBAD-His; lane 2, WecA(pKV1) (wecAFLAG-5xHis); lane 3, D90E protein, pKV2; lane 4, D90N protein, pKV3; lane 5, D91E protein, pKV4; 6 lane, D91N protein, pKV5; lane 7, D156E protein, pKV8; lane 8, D156N protein, pKV9; lane 9, D159E protein, pKV10; lane 10, D159N protein, pKV11. LPS was separated by Tricine-SDS-PAGE, which was followed by silver staining. Loading was normalized by determining the amount of KDO in the inner core.
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wecA) carrying pKV1, and the lipid fraction containing the Und-P-P-GlcNAc product was extracted with 1-butanol. The radiolabeled control, UDP-GlcNAc, did not migrate beyond the loading point (Rf, 0.008) (Fig. 3, lane 1), but a spot with an Rf of 0.167 was detected in the extract from membranes containing WecAFLAG-5xHis (Fig. 3, lane 6). In the same buffer system, authentic Und-P and Und-P-P had Rf values of 0.64 and 0.38, respectively (data not shown). Based on these results, we deduced that the spot with an Rf of 0.167 corresponded to Und-P-P-GlcNAc. The kinetic parameters of the transfer of radiolabeled GlcNAc-1-P to Und-P were also determined. Membranes from MV501(pKV1), providing both the enzyme and the endogenous Und-P acceptor, were incubated with radioactive UDP-GlcNAc. The lipid fraction containing the Und-P-P-GlcNAc product was extracted with 1-butanol, and the radioactive counts in the 1-butanol extract reflected the amount of radiolabeled GlcNAc-1-P incorporated into Und-P. Under the standard conditions for this assay (1 mM Mg2+ and 40 µg of membrane proteins), we detected a level of product conversion of 120 nmol of GlcNAc incorporated into the lipid phase per mg of total membrane protein, corresponding to 8.8 U of enzyme activity. In addition, we estimated the amount of WecA in the membrane fractions by quantitative immunoblotting, using a similar strategy described previously (41). The total amount of WecA in the samples was determined by using C-terminal BAP-FLAG as a standard. An example of this analysis is shown in Fig. 4. The relative intensities of the bands were determined with the program ImageJ and were used to calculate the amount of WecAFLAG-5xHis in the membrane preparations, which corresponded to 27.5 ng of BAP-FLAG equivalents per 40 µg of membranes. Under these conditions, the in vitro incorporation profile was also linear as a function of time (data not shown).
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FIG. 3. Detection of Und-P-P-GlcNAc product conversion by thin-layer chromatography. Membranes of E. coli CLM37 harboring various plasmids were assayed for transferase activity under standard conditions with 14C-labeled UDP-GlcNAc, and the lipid-linked material was extracted with 1-butanol and processed as described in Materials and Methods. Lane 1, 14C-labeled UDP-GlcNAc, no membranes; lane 2, membranes from plasmidless CLM37, no 14C-labeled UDP- GlcNAc; lane 3, membranes from CLM37(pVK9) expressing WecA-D156NFLAG-5xHis; lane 4, membranes from CLM37(pVK3) expressing WecA-D90NFLAG-5xHis; lane 5, membranes from CLM37(pVK11) expressing WecA-D159NFLAG-5xHis; lane 6, membranes from CLM37(pVK1) expressing WecAFLAG-5xHis. The dotted line indicates the loading point.
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FIG. 4. Quantitative immunoblotting to determine the amounts of WecA in total membrane preparations. The relative amounts of FLAG molecules in the samples were determined by comparison with known amounts (0.4 to 3.2 ng) of purified BAP-FLAG, which were included on the same gel. The graph is a plot of the relative pixel densities of the BAP-FLAG bands, which were calculated with the program ImageJ, versus the amounts of purified protein loaded in the lanes. The inset shows the blot with the different amounts of BAP-FLAG (left four lanes) and WecAFLAG-5xHis (right four lanes). The amount of WecAFLAG-5xHis was deduced from the standard curve.
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FIG. 5. Transfer of GlcNAc-1-P to Und-P. All assays were carried out at 37°C for 15 min in triplicate. One unit of enzyme activity was defined as 103 pmol of GlcNAc incorporated/min/mg protein. (A) UDP-GlcNAc-dependent activity of WecAFLAG-5xHis in the presence of excess Mg2+ (16.7 mM) and Mn2+ (3.1 mM). (B) Mg2+- and Mn2+-dependent enzyme activity of WecAFLAG-5xHis. Assays were carried out at 37°C for 15 min with a fixed concentration of UDP-GlcNAc (131.4 pmol), 40 µg of total membranes from an MV501(pKV1) preparation, and different concentrations (0 to 3 mM) of Mg2+ and Mn2+.
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TABLE 2. Comparison of kinetic parameters of UDP-GlcNAc for parental and mutant WecAFLAG-5xHis
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TABLE 3. Comparison of kinetic parameters of Mn2+ and Mg2+ for parental and mutant WecAFLAG-5xHisa
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Kinetic analyses, as described above for the parental WecAFLAG-5xHis protein, were performed to characterize in more detail the functional defects of each mutant protein. Membranes containing WecA-D156EFLAG-5xHis and WecA-D156NFLAG-5xHis did not exhibit any detectable transfer activity (Table 2) and, as expected, did not restore production of O7 antigen in strain MV501 (Fig. 2, lanes 7 and 8). Also, product conversion was not detected by TLC (Fig. 3, lane 3, and data not shown). These results suggest that Asp156 could be required for catalysis, by acting as a nucleophile for cleavage of the pyrophosphate bond of the biphosphate nucleotide sugar substrate. The GlcNAc-1-P transfer activity of membranes containing the D159E and D159N proteins was detectable but drastically reduced. In both cases, the enzyme exhibited a 10-fold increase in the apparent Km for UDP-GlcNAc compared to the wild type and 1% relative efficiency (Table 2). These findings are consistent with the TLC results showing that product conversion in reactions with membranes containing WecA-D159NFLAG-5xHis was barely detectable, with less than 20% of the amount of Und-P-P-GlcNAc detected for parental WecAFLAG-5xHis (Fig. 3, lane 5). WecA-D159EFLAG-5xHis and WecA-D159NFLAG-5xHis mediated the production of small amounts of one O7 unit attached to the lipid A core (Fig. 2, lanes 9 and 10), confirming that the enzymes were poorly functional in vivo. The kinetic parameters for the Mg2+ and Mn2+ cofactors showed that there were small increases (
2-fold compared to the values for the parental protein) in the apparent Km values with both metals for WecA-D159EFLAG-5xHis and virtually no change for WecA-D159NFLAG-5xHis. However, the small variations in Km were associated with drastic reductions (range, 7- to 35-fold) in the Vmax values (Table 3). The ratios of the Km values for the proteins with Asp-to-Asn replacements to the Km values for the proteins with the Asp-to-Glu replacements were used to estimate the relative affinities of the enzymes for metal ions. A ratio greater than 1 suggested that an enzyme had more affinity for a metal ion, while a ratio that was equal to or less than 1 indicated that the enzyme affinity for a metal ion did not vary despite the residue charge. The ratio of the Km values for the D159N and D159E proteins was 0.5 with Mg2+ and Mn2+ (Table 3), suggesting that Asp159 does not interact with the metal ions. Collectively, the combined results of these experiments indicate that Asp156 and Asp159 are part of a putative catalytic center involved in binding or modification of the UDP-GlcNAc substrate.
The kinetic parameters for the GlcNAc-1-P transfer reactions with excess metal ion cofactors in membranes containing WecA-D90EFLAG-5xHis, WecA-D90NFLAG-5xHis, and WecA-D91NFLAG-5xHis revealed slightly reduced velocities and small increases in the apparent Km for UDP- GlcNAc (Table 2). The data suggest that Asp90 and Asp91 do not directly interact with UDP-GlcNAc. Membranes containing WecA-D91EFLAG-5xHis exhibited a sixfold decrease in the apparent Km for UDP-GlcNAc compared to the apparent Km of the parental enzyme. However, despite the apparently higher enzymatic efficiency of WecA-D91EFLAG-5xHis, none of the replacements at the Asp90 and Asp91 positions resulted in functional proteins, as determined by complementation of the WecA function in strain MV501 (Fig. 2, lanes 3 to 6). Also, the TLC experiment did not detect product conversion with membranes containing the D90N replacement protein (Fig. 3, lane 4). The kinetic parameters for the transfer reaction with Mg2+ and Mn2+ showed that replacement of Asp90 and Asp91 had different effects on the enzyme function. In membranes containing the D90E and D90N forms of WecA, the apparent Km values for Mg2+ and Mn2+ increased three- to fivefold compared to the apparent Km of the parental enzyme (Table 3). Also, the ratios of the Km values for the D90N and D90E forms were 1.2 and 0.6 with Mg2+ and Mn2+, respectively (Table 3), indicating that the enzyme affinity for the metal ion did not vary dramatically regardless of the residue charge, which suggests that Asp90 does not interact with either Mg2+ or Mn2+. In contrast, in membranes containing the D91N and D91E forms of WecA, the apparent Km values with Mg2+ increased threefold and decreased threefold, respectively, compared to the apparent Km of the parental enzyme (Table 3). Similar variations were observed with Mn2+. The ratios of the Km values for the D91N and D91E forms with Mg2+ and Mn2+ were 11.4 and 6.2, respectively (Table 3), indicating that the D91N substitution resulted in reduced affinity for the metal ions and suggesting that Asp91 interacts with both Mg2+ and Mn2+.
The Vmax values with both metals were more affected for the D90E and D91E forms than for the forms with Asn substitutions, except for a higher-than-wild-type value for the D90N form (Table 3). This suggests that the larger aliphatic chain of glutamic acid at both positions may interfere with enzymatic activity, possibly by altering the geometry of a putative catalytic site.
Topological analysis of WecA demonstrates that Asp90/91 and ASP156 are exposed to the cytosol. The topology of WecA has been predicted only from computer algorithms and was not experimentally assessed. We determined the transmembrane topology of WecA by the substituted cysteine accessibility method (8). In this method substituted cysteine mutants and a combination of membrane-permeable and membrane-impermeable sulfhydryl-directed chemical labeling reagents are used. WecA contains five cysteine residues located at positions 62, 79, 167, 189, and 337, all of which were replaced by alanine, resulting in cysteineless WecAFLAG-5xHis (encoded by pJL5 [Table 1]), which was further modified by incorporating two additional histidine residues, resulting in WecAFLAG-7xHis (encoded by pJL7). The additional histidine residues facilitated WecA binding in Ni2+ affinity chromatography (data not shown), a critical step for detection of specific sulfhydryl labeling of this protein. The Cys-to-Ala substitutions and the incorporation of the seven-His tag did not interfere with protein stability or targeting to the plasma membrane (Fig. 6A). Also, the cysteineless WecA forms encoded by pJL5 and pJL7 did not differ in the ability to complement O-antigen LPS production in E. coli MV501 compared to the ability of the parental protein encoded by pKV1 (Fig. 6B).
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FIG. 6. (A) Expression of WecAFLAG-7xHis. Total membranes were prepared from strain MV501 (VW187 wecA::Tn10) transformed with various plasmids containing several versions of wecA (Table 1). Lane 1, WecAFLAG-7xHis, pJL1; lane 2, WecAFLAG-7xHis-Cys, cysteineless version of WecA encoded by pJL7; lane 3, WecAFLAG-5xHis, pKV1; lane 4, vector control, pBAD-His. Each lane contained 4 µg of protein. Membranes were transferred to a nitrocellulose membrane and reacted with anti-FLAG monoclonal antibodies. The molecular mass standards were myosin (206 kDa), ß-galactosidase (119 kDa), bovine serum albumin (91 kDa), ovalbumin (51 kDa), and carbonic anhydrase (34.7 kDa). (B) Complementation of O7 LPS synthesis in strain MV501 (VW187 wecA::Tn10). LPS samples were obtained from E. coli MV501 (VW187 wecA::Tn10) transformed with various plasmids. Lane 1, vector control, pBAD-His; lane 2, WecAFLAG-5xHis, pKV1; lane 3, WecAFLAG-7xHis-Cys, cysteineless version of WecA encoded by pJL7. LPS was separated by Tricine-SDS-PAGE, which was followed by silver staining. Loading was normalized by determining the amount of KDO in the inner core.
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FIG. 7. Topological model of WecA. The model was originally derived by using the TMHHM computer program (49) and was experimentally refined based on the results of the substituted cysteine accessibility experiments (see Fig. 6). Boldface numbers indicate cytosolic loops 1 to 5. The residues spanning predicted transmembrane segments are enclosed in boxes. The individual residues with a gray background are the residues that, when replaced by cysteine, are protected by MTSET from biotin maleimide labeling. The circled residues with a white background are the residues that, when replaced by cysteine, are resistant to labeling by biotin maleimide. The residues with a black background are the residues that, when replaced by cysteine, are labeled with biotin maleimide irrespective of MTSET pretreatment. Squares indicate residues at which cysteine replacement affects the function of WecA, as determined by complementation of O7 LPS synthesis in E. coli MV501. Circles indicate residues at which cysteine replacement did not compromise WecA function. The dotted circle indicates Asp217. The asterisks indicate additional residues important for WecA function, which were identified in previous studies (3, 4). The question marks indicate residues where the experimental and predicted topologies do not agree.
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FIG. 8. Sulfhydryl labeling accessibility of cysteine replacements in WecAFLAG-7xHis. The top panel shows the results obtained with biotin maleimide labeling. The middle panel shows the results of biotin maleimide labeling with MTSET-pretreated samples. The lower panel shows Western blots with the FLAG monoclonal antibody. WecA-Cys is the cysteineless WecA protein encoded by pJL7. Each of the replacement mutants is indicated by its short designation (see Fig. 7 for the location of each residue in the topological model of WecA). Biotin maleimide labeling of S362C in the presence and absence of MTSET was done in a different experiment. Lane M contained molecular mass markers.
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The results of cysteine accessibility experiments with the S362C replacement protein suggested that the C-terminal segment of WecA resides in the cytosol. To independently confirm this suggestion, we constructed a C-terminal fusion with GFP, which can fluoresce only if it is present in the cytosol (16). Cells expressing the WecAGFP hybrid displayed fluorescence around the cell perimeter with a punctate pattern (Fig. 9), suggesting that WecA was in the membrane with the C terminus facing the cytosol. The punctate pattern was observed only with bacteria cultured with 0.002% (wt/vol) arabinose in the growth medium. In contrast, when a higher concentration of arabinose (0.2%) was added to the medium, the periphery of the bacterial cells was uniformly fluorescently labeled (data not shown), suggesting that the punctate localization of WecAGFP was not an artifact resulting from protein overexpression. Therefore, we concluded that WecA localized to discrete regions within the membrane.
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FIG. 9. WecA localizes in discrete membrane domains: fluorescence microscopy of bacteria expressing WecAGFP. (Inset) Punctate pattern of fluorescence that is limited to the circumference of bacterial cells. The micrograph was taken with a x100 oil immersion objective, resulting in a magnification of x1,000.
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FIG. 10. Complementation of O7 LPS expression in E. coli MV501 by plasmids encoding the cysteine-substituted derivatives of cysteineless WecAFLAG-7xHis, as determined with silver-stained polyacrylamide gels. WecA-Cys is the cysteineless WecA protein encoded by pJL7. Each of the replacement mutants is indicated by its short designation (see Fig. 7 for the location of each residue in the topological model of WecA).
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In a previous study, Asp267 of the E. coli MraY protein was proposed to be the active site nucleophile responsible for cleavage of the pyrophosphate bond of the biphosphate nucleotide sugar substrate (28). Asp217 in E. coli WecA, located in transmembrane segment 8 (Fig. 7), was predicted to be comparable to Asp267 in MraY (28, 42), but it is not clear how a residue buried in the transmembrane region could access the soluble substrate in the cytosol. In contrast, Asp156 in WecA is clearly exposed to the cytosol, and the kinetic data from the analysis of conservative replacements with Asn and Glu demonstrated that there was a drastic reduction in the enzymatic activity. Moreover, Asp156Glu, Asp156Asn, and Asp156Cys replacements resulted in nonfunctional proteins that could not restore O7 antigen production in MV501. Therefore, our results suggest that the Asp156 residue in WecA may be comparable to the Asp267 residue in MraY, although additional experiments are necessary to demonstrate its involvement in attacking the pyrophosphate bond of UDP-GlcNAc.
The replacement of Asp159 with glutamic acid resulted in a reduced level of catalytic enzyme efficiency. Whereas some bacterial WecA homologues and the eukaryotic members of the family (all of which utilize UDP-GlcNAc as a substrate) have an asparagine in the same location as Asp159 (4), the enzymes with the Asp159Asn replacement also had reduced enzymatic activity compared to that of the parental WecA. Bacteria containing the mutant D159N protein produced dramatically reduced levels of O7 antigen. From these data we concluded that Asp159 may be less critical than Asp156 for the function of WecA. Our results also demonstrate that M154C is defective in O7 antigen synthesis. Therefore, the region in cytosolic loop 3 of WecA spanning at least Met154 through Asp159 plays an important role in enzyme function.
Divalent cations, especially Mn2+ and Mg2+, may be involved in the phosphoryl transfer reaction in different enzymes that catalyze the formation of phosphodiester bonds (27). We show here that WecA can function well with either Mg2+ or Mn2+, although the kinetic parameters indicated that the enzymatic reaction in vitro is more effective with Mn2+. However, it is likely that either divalent cation may be used in vivo since the optimal concentrations of Mn2+ and Mg2+ for enzyme activity are below the average concentrations of these metals in bacterial cells, 0.8 mM for Mn2+ (2) and 4 mM for Mg2+ (29).
In previous studies, a DDXXD motif that is located in predicted cytosolic loop 2 of bacterial PNPTs (this motif corresponds in WecA to D90DXXD94) and is also present in the eukaryotic members of the family was proposed to be potentially involved in binding of an Mg2+ cofactor (4, 28, 57). This proposal was based on comparisons with prenyl transferases, especially polyprenyl pyrophosphate synthetases (7, 50). These enzymes contain two DDXXD regions that have the carboxylate groups of the aspartic acids, which have been implicated in binding the metal ion, pointing to the active site cleft (50). However, the mechanism of polyprenyl pyrophosphate synthetases is different than the displacement mechanism proposed for PNPTs. Also, PNPTs have only one DDXXD motif. Our data obtained in this study indicate that the D90DXXD94 motif in WecA is not analogous to the corresponding motifs in prenyl transferases. First, the kinetic parameters for Mg2+ and Mn2+ showed that replacement of Asp90 and replacement of Asp91 had different effects on WecA enzyme function. Our results suggest that Asp91, but not Asp90, interacts with either Mg2+ or Mn2+. Given that Asp91 is universally conserved in all PNPTs, this residue may be critical for the correct functioning of the enzyme due to its involvement with the metal ion cofactor. Second, we have previously shown that replacement of Asp94 has no effect on WecA function (4), and this residue is much less conserved in the members of the family. Third, we show here that replacement of Gly87 by cysteine (Fig. 6) destroys enzyme function. Since Gly87 is also highly conserved in PNPTs (4), we propose that the functional motif in these enzymes is G87XXDD91, where Asp91 interacts with the metal ion.
Very little information concerning the topology of PNPTs is available. Using ß-lactamase fusions, a topological map was constructed for MraY (9), but most of the topological information for other members of the family has been obtained from computer predictions of the transmembrane topology (3, 6, 28, 42). The substituted cysteine accessibility method employed in this study allowed more precise mapping of the boundaries of cytosolic loops 2 and 3 and unequivocal demonstration of the cytosolic location of Asp90, Asp91, and Asp 156. We also demonstrated that His278, a critical residue in cytosolic loop 5 involved in binding of UDP-GlcNAc (3), is indeed exposed to the cytosol. In contrast, other residues in cytosolic loop 5, such as His281 and Ala286, were not accessible to biotinylation when they were replaced by cysteine, suggesting they are in the membrane bilayer or they form part of a structure inaccessible to biotin maleimide. Moreover, when Asp35 and Arg209, located in cytosolic loops 1 and 4, respectively, were replaced by cysteine, the proteins were resistant to biotinylation in the presence of the membrane-impermeable blocking reagent MTSET. The results suggest that these residues are exposed to the periplasmic side of the membrane, which does not agree with the computer predictions. Also, replacement of Asp35 by Cys was associated with loss of complementation of O7 production in strain MV501. We observed in a previous study that replacement of Asp35 by glycine resulted in reduced WecA enzymatic activity and O-antigen production (4). Further analysis is required to define more precisely the boundaries of cytosolic loops 1, 4, and 5 and the function of Asp35. Also, the substituted cysteine accessibility method made it possible to identify additional residues required for WecA function, which were not previously recognized and which are currently being investigated in more detail in our laboratory.
Transferases for the initiation reaction of the O unit and enterobacterial common antigen are the only enzymes in these systems with multiple transmembrane domains, while the other enzymes involved in extension of the glycans are peripheral membrane proteins (43, 52). Fluorescence microscopy with WecAGFP not only confirmed a membrane location but also revealed a punctate distribution rather than a homogenous distribution around the cell perimeter. This observation suggests that WecA may be located in discrete regions within the plasma membrane. Early work with Salmonella showed that new O-antigen LPS molecules appear on the cell surface at a limited number of sites (24, 39), and more recent work provided experimental evidence which supports the hypothesis that there are multiprotein complexes for assembly of capsular polysaccharides serving as a molecular "scaffold" across the periplasm (13, 36). Therefore, it is tempting to speculate that other proteins involved in O-antigen assembly, which are thought to interact with each other (31), are also localized in similar membrane domains. Experiments to address this hypothesis are under way in our laboratory.
This study was supported by a grant from the Canadian Institutes of Health Research. M.A.V. holds a Canada Research Chair in Infectious Diseases and Microbial Pathogenesis.
Published ahead of print on 19 January 2007. ![]()
J.L. and K.A.V. contributed equally to this work. ![]()
Present address: Bioniche Life Sciences Inc., Belleville, ON K8N 1E2, Canada. ![]()
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-glucosidase using 5-fluoro glycosyl fluorides. J. Biol. Chem. 271:6889-6894.This article has been cited by other articles:
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