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Journal of Bacteriology, May 2007, p. 3369-3381, Vol. 189, No. 9
0021-9193/07/$08.00+0 doi:10.1128/JB.01938-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Department of Microbiology, University of Alabama at Birmingham, Birmingham, Alabama 35294
Received 21 December 2006/ Accepted 13 February 2007
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Although a general picture of capsule synthesis in gram-positive bacteria has emerged, much remains to be learned about specific aspects of this process. As a model system, we have used the S. pneumoniae serotype 2 capsule, in which the repeat unit contains a backbone of Glc-Rha-Rha-Rha and a side chain of Glc-GlcUA (Fig. 1A). As for all S. pneumoniae capsules assembled by the Wzy-dependent mechanism, the type 2 genetic locus exhibits a cassette-like arrangement, where genes unique to a specific serotype and essential for the biosynthesis of type-specific sugars, polymerases, and transporters are flanked by homologous sequences common to all serotypes (Fig. 1B) (3, 23, 30, 34). Putative roles for the type 2-specific genes have been assigned based on homology (34), but their functions have not been experimentally determined.
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FIG. 1. Type 2 capsule structure and genetic locus. (A) Structure of the repeat unit. Synthesis of the backbone initiates by addition of Glc-1-P to a polyprenol acceptor. (B) Genetic organization of the type 2 capsule locus (34). S. pneumoniae capsule loci are flanked by dexB upstream and aliA (also referred to as plpA) downstream. The arrow indicates the putative transcript containing cps2A to cps2O.
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In the present study, we examined the role of the side chain, and specifically the terminal GlcUA residue, in production of the S. pneumoniae type 2 capsule. Our results demonstrate that this residue is essential for proper assembly and processing of the capsule, and the inability to synthesize or process a complete repeat unit is detrimental to the cell, due at least in part to failure to transfer the polymer to the cell wall.
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F', TOP10, and M15(pREP4) were grown in L broth (10 g/liter tryptone, 5 g/liter yeast extract, 5 g/liter NaCl, and 1 g/liter glucose) or L agar (L broth containing 15 g/liter Bacto agar). Media were supplemented with the following antibiotics when appropriate: erythromycin (Em) (0.3 µg/ml for S. pneumoniae and 300 µg/ml for E. coli), ampicillin (100 µg/ml), or kanamycin (Km) (250 µg/ml for S. pneumoniae and 50 µg/ml for E. coli). |
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TABLE 1. Strains and plasmids used in this study
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For expression of recombinant Cps2K, a 100-ml culture of BX163 was grown from an overnight culture diluted 1:100 in L broth containing the appropriate antibiotics at 37°C with shaking to a cell density of
2 x 108 CFU/ml. Expression of cps2K was induced with isopropyl-thio-ß-galactoside (IPTG) (0.8 mM final concentration) for 4 h at 37°C. Cultures were centrifuged at 20,000 x g for 10 min, and the pellet was stored overnight at 80°C until further purification. The pellet was resuspended in 4 ml of a phosphate buffer (50 mM sodium phosphate, 300 mM NaCl, 1 mM dithiothreitol, and 1 mM phenylmethylsulfonyl fluoride) and treated with 1 mg/ml of lysozyme for 4 to 5 h at 4°C. The lysozyme-treated sample was sonicated using three 30-s bursts with a 2-min cooling time on ice in between each burst. Insoluble material was pelleted (20,000 x g for 10 min at 4°C) from this lysate, and the soluble His6-Cps2K was purified from the supernatant using Talon beads as per the manufacturer's protocol (BD Biosciences). Dithiothreitol (1 mM) was present throughout the entire purification procedure in order to stabilize the UDP-GlcDH (14, 53). The presence of the 44-kDa protein was confirmed by Coomassie blue staining of sodium dodecyl sulfate (SDS)-10% polyacrylamide gels in which the proteins from the lysates, supernatants, and His purification had been separated.
A UDP-GlcDH activity assay was done spectrophotometrically by following the accumulation of NADH at 340 nm, which results from the reduction of 2 mol of NAD+ for every mole of UDP-Glc oxidized (55). Briefly, 5 µl of the BX163 crude lysate or soluble fraction obtained as described above and containing 50 µg of total protein, or 50 µg of the His-purified protein from BX163, was added to 1 ml of a reaction mixture containing 100 mM Tris-HCl (pH 8.7), 10 mM MgCl2, 0.5 mM UDP-Glc, and 1 mM NAD+. The accumulation of NADH at room temperature was followed spectrophotometrically at 340 nm. Protein concentrations were determined using the Bio-Rad Bradford assay method. To determine the amount of NADH produced per minute, a standard curve was extrapolated from the absorbance of NADH standards (concentration range, 1 to 500 µM) at 340 nm. Purified bovine UDP-GlcDH (Sigma) was used as a positive control.
Plasmid and mutant constructions.
Primers used for the construction of plasmids and mutants are listed in Table 2. For an in-frame deletion of cps2K, the flanking regions were PCR amplified from D39 chromosomal DNA using primer pairs Cps2-J1/Cps2-J12303F and Cps2-P1/Cps2-P14568R. The two resulting PCR products were cloned separately into pCR 2.1-TOPO (Invitrogen) and transformed into TOP10 cells. Each cloned fragment was excised using EcoRI and KpnI and subcloned together into the S. pneumoniae suicide vector pJY4164, resulting in pBX108. The correct orientations of the inserts were confirmed by PCR and sequencing. The ORF of the Km resistance-encoding gene, aphA-3, was amplified from the pneumococcal shuttle vector pSF151 using the primer pair KM151-2/KM151-3, and the resulting PCR product was cloned into pCR 2.1-TOPO vector. pBX108 was partially digested with KpnI, and the aphA-3 fragment was excised from TOPO using KpnI and subsequently inserted between the two fragments in pBX108, resulting in pBX113. Correct orientation of all three inserted fragments was then confirmed by PCR and restriction digestions. pBX113 was transformed into competent D39, and
cps2K mutants were selected by Km resistance and confirmed by PCR and sequencing. Constructions of in-frame deletions of cps2H and cps2J were performed as described for deletions of cps2K except that the primer pairs used were Cps2-G0/Cps2-G2 and Cps2-I2/Cps2-I3 for deletion of cps2H and Cps2-I4/Cps2-J8 and Cps2-J7/Cps2-K1 for deletion of cps2J.
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TABLE 2. Primers used in this study
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cps2K mutants, the cps2K ORF and 500 bp flanking each side were PCR amplified from D39 chromosomal DNA using primer pair Cps2-J1/Cps2-P2. The fragment was cloned into pCR 2.1-TOPO, subsequently excised using EcoRI, and ligated into pJY4164. The resulting construct, pBX115, was transformed into
cps2K strains BX511, BX512, and BX533. The mixtures were plated on blood agar plates without selection. Strains BX515, BX518, and BX540, which contained repairs of the respective
cps2K mutants, were obtained by screening for loss of Km resistance, and the repair of cps2K was confirmed by PCR and sequencing.
For repair of
cps2K mutants with cps3D, the UDP-GlcDH gene from serotype 3 S. pneumoniae, the ORF of cps3D was PCR amplified from S. pneumoniae WU2 chromosomal DNA using primer pair Cps3D-F/Cps3D-R and cloned into pCR 2.1-TOPO. The forward primer Cps3D-F includes the Shine-Dalgarno sequence and start codon of cps3D. The cloned fragment was excised using KpnI and inserted between the two fragments in pBX108, resulting in pBX116. Correct orientation of all three fragments was confirmed by PCR. The resulting construct was transformed into BX511, and the reaction mixture was plated on blood agar plates without selection. Strain BX517, containing the allelic exchange of cps3D for aphA-3 in BX511, was obtained by screening for loss of Km resistance, which was then confirmed by PCR.
Repair of cps2E in the cps2K-repaired strains was conducted essentially as described above for the repair of
cps2K mutants. cps2E, along with the 500 bp on either side, was PCR amplified from D39 chromosomal DNA and cloned into pCR 2.1-TOPO. The cloned fragment was excised using EcoRI and ligated into pJY4164, resulting in pBX145. pBX145 was transformed into BX515 and BX518, and the reaction mixture was plated on blood agar plates without selection. Repaired cps2E strains, BX545 and BX546, respectively, were identified by screening for large, glossy colonies, and repair of the mutations was confirmed by sequencing.
Capsule analyses.
Indirect capsule enzyme-linked immunosorbent assays (ELISAs) were performed as previously described (31, 39) with slight modifications. In brief, duplicate cultures were grown in THY to a density of
3 x 108 CFU/ml, and 5 ml of each was centrifuged at 20,000 x g for 10 min. The culture supernatant was collected and filtered (0.45-µm-pore-size syringe filter; Corning). The pelleted cells were resuspended in phosphate-buffered saline (PBS) (342.5 mM NaCl, 6.75 mM KCl, 13.5 mM Na2HPO4, and 4.5 mM KH2PO4) and heat killed at 56°C for 20 min. All samples were normalized to the same optical density at 600 nm. Wells of polystyrene microtiter plates (Corning Inc.) were coated overnight at 4°C with twofold serial dilutions of the samples. Wells were washed three times in PBS containing 0.5% Tween (PBST) and blocked for 1 h with 200 µl of 1% bovine serum albumin (BSA) in PBS (BSA-PBS) at room temperature. A rabbit polyclonal anti-type 2 antiserum (Statens Serum Institute, Denmark) adsorbed against a nonencapsulated type 2 derivative, AM1000, was used for detection of capsule on the cell surface. For adsorption, 250 ml of AM1000 was grown in THY to a density of
3 x 108 CFU/ml and heat killed for 45 min at 56°C. The culture was centrifuged, washed once in PBS, centrifuged, and resuspended in 250 µl of anti-type 2 antiserum diluted 1/10 in PBS. Adsorption was conducted by rotating the solution overnight at 4°C. AM1000 was pelleted, and the supernatant containing the adsorbed anti-type 2 antiserum was filter sterilized (0.22-µm-pore-size syringe filter; Millipore) and stored at 4°C until use. The adsorbed anti-type 2 antiserum was diluted 1/5,000 in BSA-PBS, and 100 µl of this solution was added to each well, followed by incubation at room temperature for 1 h. The wells were washed three times with PBST and incubated with biotinylated goat anti-rabbit immunoglobulin conjugated to strepavidin-alkaline phosphatase for 1 h at room temperature. The wells were washed three times with PBST, followed by development with 1 mg/ml p-nitrophenolphosphate in glycine buffer (0.1 M glycine, 1 mM MgCl2, 0.1 M ZnCl2, pH 10.4). Absorbance was measured at 415 nm. Surface accessibility assays were performed in an identical manner except that the adsorbed type 2-specific antiserum was replaced with a nonadsorbed rabbit polyclonal antiserum raised against a type 19 strain (Statens Serum Institute, Denmark). This antiserum contains a high titer of antibodies to noncapsular surface antigens and provides an effective measure of blocking of the surface by the capsule (31). For competitive-inhibition ELISAs, cultures were grown as described above. Assays were performed as previously described (13). Briefly, wells of microtiter plates were coated as described above with heat-killed D39 at a density of 3 x 108 CFU/ml in PBS. Cell lysates used as inhibitors were prepared by growing 10-ml cultures of each strain to a density of 3 x 108 CFU/ml in THY. Samples were normalized to the same optical density and centrifuged at 20,000 x g for 10 min. Pellets were resuspended in 0.1 ml lysis buffer (0.1% sodium deoycholate, 0.01% SDS, 0.15 M sodium citrate) and incubated at 37°C for 10 min. To the lysed bacteria, 0.9 ml of SSC (0.15 M NaCl, 0.015 M sodium citrate) was added, and the samples were incubated at 65°C for 15 min. Twofold serial dilutions of the lysates or culture supernatants, together with polyclonal anti-type 2 antiserum diluted as described above, were added to the D39-coated microtiter plates. The remainder of the procedure was as described above for the indirect ELISAs.
Electron microscopy.
Bacteria were prepared for electron microscopy as described by Kolkman (38). Briefly, cultures were grown to a density of
3 x 108 CFU/ml in THY, and 5 ml of each culture was centrifuged at 20,000 x g for 10 min. The pellets were fixed in 500 µl of a 1% glutaraldehyde-4% formaldehyde solution for 30 min at 4°C. Fixed samples were further processed by the University of Alabama at Birmingham electron microscopy core facility for microscopy. In general, samples were postfixed in 1% osmium tetroxide, washed in phosphate buffer, dehydrated with ethanol, embedded with Polybed, dried, sectioned, and stained with uranyl acetate.
Protein analyses of Cps2D
P, Cps2D, and Cps2E.
Western immunoblots of Cps2D and tyrosine-phosphorylated Cps2D [Cps2D
P] were performed as previously described (6). In brief, cultures were grown to a density of
3 x 108 CFU/ml and centrifuged at 20,000 x g for 10 min at 4°C. The pellets were resuspended in water at a 50x concentration, and the samples were normalized to the same optical density at 600 nm. Twenty microliters of the cell suspensions was used for Cps2D blots, and 10 µl was used for Cps2D
P blots. Samples were boiled in SDS-polyacrylamide gel electrophoresis (SDS-PAGE) loading buffer, and proteins were separated by SDS-10% PAGE. Proteins were transferred to a nitrocellulose membrane. Cps2D was detected using a polyclonal rabbit Cps2D-specific antiserum as described previously (64). Cps2D
P was detected using a monoclonal antibody to phosphotyrosine clone PT-66 conjugated to horseradish peroxidase (Sigma). ImageJ software (http://rsb.info.nih.gov/ij) was used for densitometry analyses.
Relative Cps2E protein levels were determined as described previously (15). In brief, 10 µg of total protein from isolated S. pneumoniae membranes was separated by SDS-10% PAGE and subsequently transferred to a nitrocellulose membrane. Cps2E was detected using a polyclonal rabbit antiserum directed against the C-terminal portion of Cps2E and diluted 1/5,000.
Capsule replacement experiments and linkage analyses to map suppressor mutations in
cps2K mutants.
Em resistance markers were linked to the capsule locus by insertion of pJD377 (plpA insertion, downstream) and pBX123 (between dexB and the capsule promoter, upstream) into the D39 chromosome, resulting in strains BX516 and BX535, respectively. Chromosomal DNAs of BX516 and BX535 were isolated using a genomic column prep (QIAGEN) and used to transform the
cps2K mutants BX511 and BX512. Em-resistant transformants were screened for the large-colony phenotype indicative of capsule production and also for loss of Km resistance.
To sequence cps2E, the gene was PCR amplified from chromosomal DNAs of the
cps2K mutants using primer pairs Cps2-E10 and Cps2-E11. The fragment was gel extracted (gel extraction kit; QIAGEN) and sequenced at the sequencing core facility of the Helfin Center for Human Genetics at the University of Alabama at Birmingham.
Membrane isolations and Cps2E glycosyltransferase assays. Cps2E glycosyltransferase activity in isolated membranes was tested as described previously (37), where Cps2E activity is defined as the ability to transfer [3H]Glc from UDP-[3H]Glc to an organically soluble product in a reaction conducted at 10°C. S. pneumoniae membranes were isolated as previously described (15, 16). Membranes containing 10 µg of total protein were incubated in a 100-µl reaction mixture of 5 mM Tris-acetate (pH 7.5), 10 mM MgCl2, and 1 µM UDP-[3H]Glc (1 Ci/mmol; Sigma) at 10°C for 10 min. The reaction was stopped by the addition of 1 ml chloroform-methanol (2:1), and the organic phase was extracted using 200 µl pure solvent upper phase (1.5 ml chloroform, 25 ml methanol, 23.5 ml H2O, and 0.183 g KCl). The amount of radioactivity incorporated into the organic phase was measured by liquid scintillation counting.
Analysis of capsule transcripts. RNA was isolated from 50-ml S. pneumoniae cultures using a previously described hot-acid-phenol procedure (27). Serial twofold dilutions of RNA samples were used in slot blot analyses to determine the relative amounts of transcripts. Detection of transcripts and densitometry were performed as previously described (6). PCR probes were digoxigenin labeled (Roche), and the amount of labeling was visualized using Pierce SuperSignal chemiluminescent substrate. ImageJ software was used for densitometry analyses. The intensity of each band was normalized to lactate dehydrogenase (ldh) transcripts, and these ratios were compared for the parent and mutant strains.
Capsule immunoblots.
Fractionation of S. pneumoniae into cell wall and protoplast fractions was performed as previously described with minor modifications (73). This method results in minimal cross contamination of fractions (6). In brief, S. pneumonie cultures were grown to a density of
3 x 108 CFU/ml, and cells were sedimented at 20,000 x g for 10 min at 4°C. Pellets were suspended in protoplast buffer (20% sucrose, 50 mM MgSO4, 50 mM Tris [pH 7.4]) at 1/100 the original culture volume. Forty units of mutanolysin (Sigma) was added to each milliliter, and the sample was incubated overnight at room temperature (the S. pneumoniae autolysin LytA is also active under these conditions). After incubation, the formation of protoplasts was confirmed by light microscopy. Protoplasts were sedimented at 10,000 x g for 10 min. The supernatant containing the cell wall fraction was filtered (0.22-µm-pore-size syringe filter; Millipore), and the sedimented protoplasts were resuspended in protoplast buffer in a volume equal to the cell wall extract. For samples concentrated 2- or 10-fold, pellets were suspended in 1/200 or 1/500 of the original culture volume.
The fractions were further processed and analyzed for capsule and teichoic acids in immunoblots as previously described (6). In brief, 20 µl of sample containing either cell walls or protoplasts was combined with 10 µl of buffer B1 (50 mM EDTA, 0.5% Tween 20, 0.5% Triton X-100, 50 mM Tris [pH 8] [QIAGEN]) and 2 µl of Qiaprotease (20 µg/µl; QIAGEN) and incubated at 37°C for 30 min. Ten microliters of SDS-PAGE loading dye was added to each sample, followed by heating at 100°C for 8 min. The samples were separated by SDS-10% PAGE and then transferred to nitrocellulose membranes. Capsular polysaccharides were detected using a rabbit polyclonal antiserum against the type 2 capsule (Statens Serum Institute, Denmark) that had been adsorbed against the nonencapsulated AM1000 (as described above) and diluted 1/1,000. The presence of teichoic acid (C-polysaccharide) in the cell wall fractions was detected using a rabbit polyclonal antiserum diluted 1/5,000 (Statens Serum Institute, Denmark).
Isolation and characterization of capsule produced by
cps2K mutants.
Cultures (250 ml) of D39 and a
cps2K mutant, BX511, were grown to mid-exponential phase in chemically defined media (59) containing 0.0005% choline chloride, 0.25% sodium bicarbonate, and 0.073% cysteine-HCl. The polysaccharide isolation procedure was based on previously described methods (28, 68) with modifications, as described below. Cultures were centrifuged at 20,000 x g for 10 min, and the pellet was resuspended in 5 ml of water. Water-saturated phenol was added to a final concentration of 1%, and the suspension was incubated overnight at room temperature. Microscopy was used to confirm lysis of the bacteria. Cellular debris was pelleted by centrifugation at 20,000 x g for 30 min at 4°C. The supernatant was collected, and ethanol and sodium acetate were added to final concentrations of 60% and 7.2%, respectively, to precipitate the polysaccharide. The solution was centrifuged at 20,000 x g for 30 min at 4°C. The resulting pellet was dissolved in 5 ml of water, and the pH was adjusted to 7.5 with 1 M NaOH. Forty units of DNase (Promega) and 40 µg of RNase (QIAGEN) were added, and the suspension was incubated at 37°C for 4 h. Fifty units of proteinase K (QIAGEN) was then added, and the sample was incubated at 37°C overnight. Low-molecular-weight contaminants were removed by dialysis at 4°C overnight using 6,000- to 8,000-molecular-weight-cutoff dialysis tubing. Additional debris was removed by centrifugation (20,000 x g for 10 min at 4°C), and the supernatant containing the partially purified polysaccharide was collected and stored at 4°C.
The phenol-sulfuric acid method was used to determine total hexose present in the polysaccharide sample (4). A methylpentose assay was used to determine the amount of rhamnose present in the extracted polysaccharide samples (24). Carbazole and m-hydroxydiphenyl assays for measurement of total hexuronic acids (9, 26) were used to assess the GlcUA content in extracted polymer and whole cells. For whole cells, 10 ml of S. pneumoniae cultures was grown to a density of
3 x 108 CFU/ml and centrifuged at 20,000 x g for 10 min at 4°C. Pellets were resuspended in 500 µl of water. Serial dilutions of lysates were analyzed for total uronic acid as described previously (9, 26).
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cps2K deletion mutants exhibit severe reductions in capsule synthesis and fail to transfer polymer to the cell wall.
In-frame deletion mutants of S. pneumoniae D39 were generated by allelic replacement of cps2K with an aphA-3-containing fragment encoding resistance to Km, as described in Materials and Methods. Multiple independent cps2K mutants were derived in separate transformation reactions with D39. In contrast to the large, glossy colonies of the encapsulated D39 parent, all of the resulting Km-resistant transformants exhibited a small, rough colony morphology (Fig. 2A). When individual colonies were plated to determine CFU/colony, the numbers were the same for the parent and mutant strains (
4 x 107 CFU/colony). However, microscopic observation revealed fewer bacteria per chain for the mutants. Thus, an overall lower number of bacteria were present in each colony, suggestive of a possible growth defect (discussed further below). Using a polyclonal antiserum to the type 2 polysaccharide in indirect and competitive-inhibition ELISAs, no capsule was detectable using intact cells, cell lysates, or culture supernatants from two independent cps2K mutants (data not shown). Further, no surface-localized capsule was detectable by electron microscopy (Fig. 2B). Consistent with a severe reduction in capsule synthesis, whole cells of the cps2K mutants exhibited the same high reactivity as a nonencapsulated mutant (AM1000,
cps2A to
cps2H) in ELISAs with a polyclonal antiserum containing a high titer of antibodies to noncapsular surface antigens (Fig. 2C). In this surface accessibility assay, binding of the antibodies is blocked in proportion to the amount of cell-associated capsule (31).
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FIG. 2. Phenotypes of cps2K mutants. (A) S. pneumoniae serotype 2 parent strain D39, the nonencapsulated D39 derivative AM1000, and the cps2K mutant BX511 streaked for isolation on blood agar. (B) Electron micrographs of D39 and the cps2K mutant, BX511. The arrow indicates the capsule. (C) Indirect ELISA for surface accessibility using whole cells and a polyclonal antiserum to surface antigens. Results are the means (± standard errors) from two independent cultures assayed in the same experiment and are representative of two experiments. (D) Capsule immunoblots of cell wall (CW) and protoplast (P) fractions reacted with polyclonal antiserum against type 2 capsule. (E) Capsule immunoblots for BX512. Prior to fractionation to yield cell walls and protoplasts, the bacterial samples were concentrated 2- and 10-fold more than in panel D. The loadings in this panel therefore represent 2-fold (2x) and 10-fold (10x) more sample than in panel D. The smear in the protoplast lanes results from the heavily overloaded capsule-containing protoplast sample. The lack of capsule in the similarly overloaded cell walls is evident.
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The reduction in capsule was further demonstrated by assaying total hexose and methylpentose (for rhamnose) in polymer extracted from whole cells. In the cps2K mutants, the levels of both sugars were approximately 5% of the parental levels (Table 3). The presence of capsular polysaccharide in cell wall fractions was examined by using the methylpentose assay to assay for rhamnose. Here, the cps2K mutant BX511 was not different from the nonencapsulated strain (Table 3). Using a carbazole or m-hydroxydiphenyl assay to measure total uronic acid, GlcUA was undetectable in whole cells or extracted polymer from the
cps2K mutants (data not shown).
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TABLE 3. Hexose and methylpentose levels in cps2K mutants
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cps2K mutants were not due to undetectable levels of GlcUA arising from the activity of a non-Cps2K UDP-GlcDH, we deleted ugd in both the parent D39 and the
cps2K mutant BX511. This gene is identified in the genome sequence of strain R6, a derivative of D39 (33). It is located outside the capsule locus and is predicted to encode a UDP-GlcDH with 40% identity and 61% similarity to Cps2K. The phenotypes of the ugd deletion mutants of D39 and BX511 were identical to those of their respective parents (data not shown), indicating that this gene does not contribute to capsule synthesis in these strains.
cps2K deletion mutants contain suppressor mutations.
The alterations in capsule synthesis following deletion of cps2K were more severe than what had been anticipated at the outset of this study. To confirm that these effects were not due to any polar or feedback effects on transcription of the capsule locus, RNA slot blot analyses were performed. The probes used were specific for cps2C and cps2M, which lie upstream and downstream, respectively, of cps2K (Fig. 1B). For both independent cps2K mutants, transcription was unchanged from that of the parent D39 (data not shown). In addition, the levels of two capsule proteins, Cps2D and Cps2E, as well as the level of Cps2D tyrosine phosphorylation, were unchanged in the mutants (shown for Cps2D and Cps2D
P in Fig. 3). The presence of Rha in the mutant polymer (described above) indicated that proteins encoded by the downstream genes cps2LMNO and necessary for synthesis of TDP-Rha (a precursor for subunit assembly) were present. The results of experiments described in the next section further indicated that the cps2K deletions did not affect translation of the downstream region.
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FIG. 3. Cps2D and Cps2D P in cps2K mutants. Cps2D and Cps2D P were detected in Western immunoblots. Cps2D P/Cps2D ratios were normalized to those of the parent D39 to obtain percent values. The Cps strain was AM1000, in which cps2A to cps2H are deleted. The independent cps2K mutants were BX511 (lane 1) and BX512 (lane 2).
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FIG. 4. Capsule production by cps2K-repaired mutants. (A and B) Relative capsule amounts were determined by competitive inhibition ELISA for cell lysates (A) and culture supernatants (B). Results are shown for the cps2K mutant BX511 and its derivative BX515 obtained by repair of cps2K only. Results are the means (± standard errors) from two independent cultures assayed in the same experiment and are representative of two experiments. Identical results were obtained for the independent cps2K mutant BX512 and its respective derivative BX518. (C) Indirect ELISA for surface accessibility using a polyclonal antiserum to surface antigens. Results are the means (± standard errors) from two independent cultures assayed in the same experiment and are representative of two experiments. BX515 was significantly different from AM1000 and BX511 (P = 0.002 and 0.003, respectively, by a paired t test to compare dilutions 1/8 to 1/32). BX511 and AM1000 were not different. (D) Capsule immunoblots reacted with type 2-specific polyclonal antiserum. BX515, cps2K repair of BX511; BX518, cps2K repair of BX512. CW, cell wall fraction; P, protoplast fraction.
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FIG. 5. Capsule production by cps2K mutants repaired by capsule locus replacement. (A and B) Relative capsule amounts were determined using intact cells (A) and culture supernatants (B) in indirect ELISAs. Results are shown for the cps2K mutant BX511 and its derivative BX519, obtained by replacement of the entire capsule locus. Results are the means (± standard errors) from two independent cultures assayed in the same experiment and are representative of three experiments. Identical results were obtained for the independent cps2K mutant BX512 and its respective derivative BX522. Capsule levels for the D39 derivative BX516, containing an Em marker downstream of the capsule locus and used to replace the entire capsule locus, were identical to those for D39 (data not shown). (C) Capsule immunoblots reacted with type 2-specific polyclonal antiserum. CW, cell wall fraction; P, protoplast fraction. D39::Em, BX516 donor for capsule replacements; Cps replacement for left CW/P fractions, BX519 (BX511 repair); Cps replacement for right CW/P fractions, BX522 (BX512 repair).
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cps2K mutants BX511, BX512, and BX533 were G303V, G292R, and D425R, respectively.
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FIG. 6. Localization of suppressor mutations in cps2K mutants. (A) Restriction fragments of BX535 (D39 containing an Em marker upstream of the capsule locus) were used to transform BX518, a cps2K-repaired strain. Em-resistant transformants were screened for large, smooth colonies to denote repair of the suppressor mutation. Vertical lines indicate the region expected to contain the mutation based on the ability of the fragments to restore the parental phenotype. Numbers are Emr-smooth transformants/total Emr transformants examined in two independent transformations. (B) Indirect capsule ELISAs of intact cells for derivatives in which both cps2K and cps2E have been repaired. Results are shown for BX545, the cps2K- and cps2E-repaired derivative of BX511. Identical results were obtained for BX544, the doubly repaired derivative of BX512. Results are the means (± standard errors) from two independent cultures assayed in the same experiment and are representative of three experiments. (C) Indirect capsule ELISAs of culture supernatants, as in panel B. (D) Indirect ELISAs for surface accessibility using a polyclonal antiserum to surface antigens. Results are the means (± standard errors) from two independent cultures assayed in the same experiment and are representative of two experiments. (E) Capsule immunoblots reacted with type 2-specific polyclonal antiserum. CW, cell wall fraction; P, protoplast fraction. BX544, cps2K and cps2E repair of BX512; BX545, cps2K and cps2E repair of BX511.
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FIG. 7. Growth and Cps2E glycosyltransferase activity. (A and B) Growth curves of BX512 ( cps2K), BX518 (cps2K repair), BX545 (cps2K and cps2E repair), and KA1521 ( cps2E) compared to that of the parent D39. Cultures were diluted 1/10 from a THY culture and grown in THY. Absorbance readings were taken at the indicated time points. (C) Isolated membranes were used to measure incorporation of [3H]Glc from UDP-[3H]Glc to an organically soluble product, indicative of transfer of Glc-1-P to a polyprenol carrier (15). Membranes contained 10 µg of total protein and equivalent levels of Cps2E, as determined by Western blotting (not shown). Similar results were obtained for BX512 and its respective repaired derivatives.
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cps2K deletion mutants consistently contain suppressor mutations, which are located in cps2E or elsewhere within or near the capsule locus. To determine whether suppressor mutations were necessary for the isolation of cps2K deletion mutants, we generated 18 additional cps2K mutants in independent reactions. For all, the colony morphologies and capsule ELISA analyses were similar to those for the original cps2K mutants (data not shown). Sequence analyses of these mutants revealed cps2E mutations in 15 of the strains. All 15 mutations differed from those isolated originally. The locations of the mutations for these 15 strains are given in Table 1 (strains BX532, BX539, BX547 to -549, BX554, BX555, BX605 to -607, BX609 to -612, and BX635). The three remaining cps2K mutants could be restored to the parental phenotype by transformation with the complete capsule locus, indicating the presence of suppressor mutations in this region. The mutations in two of the mutants were localized by linkage and sequence analyses. One of these mutants, BX551, contained a transition mutation located 4 base pairs downstream of the 10 sequence in the predicted capsule promoter located upstream of cps2A. A twofold reduction in the amount of capsule transcript was observed for this mutant by RNA slot blot analysis (data not shown). The second mutant had a 1-kb insertion located in cps2L. This gene encodes the Glc-1-P thymidylyltransferase that converts Glc-1-P to TDP-Glc in the first step of TDP-rhamnose synthesis (34, 43). The insertion is expected to be polar on cps2MNO, the remaining genes in the capsule locus that are required for the final three steps in TDP-Rha synthesis. Cps2E activity in the cps2L suppressor mutant was similar to that in the parent strain (Fig. 7B, strain BX556). The location of the suppressor mutation in the third non-cps2E mutant has not been determined.
In both the original and subsequent experiments to construct cps2K deletions in the parent D39 strain, the number of isolates obtained was small (
1 Km-resistant isolate per 106 recipients). This result was consistent with the necessity to transform the rare spontaneous mutants that contained cps2E or other suppressor mutations that allowed for survival in the presence of a cps2K deletion. To determine whether the frequency of obtaining cps2K deletion mutants could be enhanced, we used as recipients isolates already containing cps2E mutations, which had been derived by repair of a cps2K deletion. Here,
500 Km-resistant isolates were obtained per 106 recipients. Both D39 and the recipients already containing cps2E mutations were transformed with donor DNA containing an Em resistance marker unlinked to the capsule locus at high efficiency (
500 to 800 Em-resistant isolates per 106 recipient for each strain), indicating that they were equally competent for transformation. Thus, deletion of cps2K is detrimental to the cell, and such mutants can be isolated only in the presence of suppressor mutations that reduce or eliminate capsule synthesis.
Deletion of cps2H or cps2J also selects for isolates that contain cps2E mutations.
To determine whether other mutations that affected polymer assembly would be detrimental to the cell, in-frame deletions of cps2J and cps2H, which encode the putative Wzx flippase and Wzy polymerase, respectively, were constructed as described in Materials and Methods. These mutants should synthesize complete repeat units that are either retained on the cytoplasmic face of the membrane (flippase mutants) or translocated to the outer face of the membrane but not polymerized (polymerase mutants). The Km-resistant transformants obtained exhibited the small, rough colony morphology indicative of nonencapsulated mutants. Based on the results for the cps2K mutants, we sequenced cps2E in independent mutants from each construction. All contained mutations. The
cps2H mutants BX552 and BX505 contained a point mutation resulting in an amino acid change (L199F) and a 1-base-pair deletion resulting in a premature stop at residue 244, respectively. The Cps2E alterations in the
cps2J mutants BX667, BX668, and BX669 were G411R, I265S, and G371A, respectively. For the
cps2H mutant BX552, the level of Cps2E protein was similar to that of the parent strain, whereas Cps2E activity was not detectable in the in vitro assay, as observed for the original cps2K mutants (data not shown). As discussed below, the suppressor mutation in the cps2H mutant is located in an extracytoplasmic loop of Cps2E, whereas the suppressor mutations of the original cps2K mutants are located in a cytoplasmic region.
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Lack of the terminal GlcUA of the side chain alters the ability to transfer the type 2 capsule to the cell wall. The lack of cell wall polymer in the Cps2K mutants could reflect a requirement for recognition of GlcUA by one or more enzymes in the capsule pathway, an alteration in the secondary structure of the polymer such that it no longer serves as a substrate for one or more enzymes, or an insufficient level of polymer substrate for transfer. The shift to predominantly high-molecular-weight polymer in the Cps2K mutants is consistent with continued polymerase activity in the absence of chain termination and suggests that both the flippase and polymerase are active in the absence of the GlcUA residue, although we cannot exclude the possibility that their activities are not optimal. Low levels of polymer substrate do not inherently preclude transfer to the cell wall, as we have shown previously that deletion of cps2C or cps2D results in the synthesis of very small amounts of mainly low-molecular-weight polymer that is effectively transferred (6). Although it has been reported that Cps2C has a role in transfer of polymer to the cell wall (42), cps2C and cps2D deletion mutants exhibit parental ratios of cell wall to membrane-associated polymer (6), demonstrating that it is not required for this function. The Cps2K mutants were unchanged with regard to Cps2D production and tyrosine phosphorylation, and thus this system was not responsible for the observed reduction in capsule levels or the failure to transfer polymer to the cell wall. The absolute requirement for GlcUA may therefore lie with the enzyme or enzymes necessary for transfer of the polymer from Und-P to the cell wall. Such enzymes have not been identified in any gram-positive bacteria, and not enough genes are present in the capsule loci to encode enzymes unique to this function.
Mutations eliminating side chain assembly, transport, or polymerization are obtained only in the presence of suppressor mutations. The lethality of the cps2K, cps2J, and cps2H mutations may have resulted from sequestration of Und-P in the capsule pathway and either preclusion of its turnover for utilization in essential pathways or destabilization of the membrane due to an accumulation of lipid-linked intermediates. This effect is most easily explained for the Wzx flippase (cps2J) mutants, which would be expected to accumulate single-repeat units on the inner face of the cytoplasmic membrane. For the cps2K mutants, the effect appears to reflect either directly or indirectly the inability to transfer polymer to the cell wall. It has not been established whether polymer transfer from Und-P to the cell wall occurs directly or via an intermediate acceptor or whether membrane-bound polymer in the parent strain is retained on Und-P or transferred to another acceptor. The high levels of membrane-bound polymer that accumulate in the parent strain apparently without harm (Fig. 2D) (6) indicate that either this level of Und-P sequestration is not lethal or the membrane-bound polymer is not linked to Und-P. The lethality of the cps2K mutations and the severe reductions in membrane-bound polymer in these mutants is consistent with the latter and a failure to transfer the polymer from Und-P to another membrane acceptor in the mutants. In the Wzy polymerase (cps2H) mutants, lipid-linked intermediates should accumulate only if single-repeat units cannot be transferred from Und-P to the cell wall or another acceptor. The fact that isolation of these mutants required suppressor mutations suggests that transfer of single-repeat units either did not occur or was very inefficient. Our previous studies demonstrated that short polymers can be transferred to the cell wall (6). The present results therefore suggest either that the linking enzyme cannot efficiently recognize and/or transfer a single, lipid-linked repeat unit or that the missing polymerase is involved in the transfer.
Secondary mutations, some of which were localized to the initiating glycosyltransferase, have similarly been noted in studies examining Pseudomonas aeruginosa LPS flippase (wzx) mutants (12), Xanthomonas campestris xanthan gum mutants (35), and Salmonella enterica serovar Typhimurium LPS mutants that failed to polymerize O-antigen subunits due to the lack of an abequose branch (74). Effects on cell viability resulting from the accumulation of lipid-linked subunits were also observed in these studies and in the characterization of E. coli LPS mutants (12, 49, 74). In contrast, mutations in S. agalactiae that resulted in lack of the side chain terminal sialic acid in the type III capsule led to reductions in capsule amount (
20% of parental levels) that could be fully restored by complementation (17). Thus, either these mutations were not lethal or any secondary mutations that occurred did not have an apparent phenotype in the complemented strain. In contrast to our observations, essentially all of the S. agalactiae polymer was transferred to the cell wall for both the parent and mutant strains, possibly precluding the necessity of a secondary mutation.
Cps2E may have functions in addition to the initiation of repeat unit formation. The high frequency of suppressor mutations in cps2E is perhaps surprising considering the other potential targets where mutations could theoretically abolish capsule production. In vitro, Cps2E catalyzes the addition of Glc-1-P to Und-P as well as the reverse reaction (15). The retention of Cps2E activity in a cps2L suppressor mutant, which would lack the ability to synthesize the TDP-Rha precursor and therefore fail to add Rha to Und-P-P-Glc, suggests that either the Cps2E reverse reaction occurs in vivo or the accumulation of Und-P-P-Glc is not toxic. Thus, mutations in the glycosyltransferase that catalyzes addition of the first Rha to the repeat unit, as well as mutations affecting TDP-Rha synthesis [cps2LMNO] or polar mutations in essentially any part of the locus, could be effective in relieving the stress induced by the cps2K, cps2J, or cps2H mutations. Yet, only 3 of our 26 suppressor mutations occurred outside cps2E. Mutations in other genes may therefore not be sufficient to prevent lethality, or Cps2E may provide many effective targets for disrupting capsule synthesis if it has roles beyond that of repeat unit initiation. Consistent with this possibility is the presence of a large extracytoplasmic domain in addition to the cytoplasmic region that contains the glycosyltransferase activity necessary for repeat unit initiation (Fig. 8). Approximately 20% of the suppressor mutations were located in the extracytoplasmic loop, which exhibits no conserved domains suggestive of putative functions. Most of the suppressor mutations were located in the cytoplasmic domain in residues conserved among Cps2E homologues in S. pneumoniae and other bacteria. However, none were in residues known to be important in glycosyltransferase activity, such as the DXD motif characteristic of UDP-sugar binding sites (10, 19).
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FIG. 8. Predicted topology of Cps2E determined using the TMpred program from the ExPASy Proteomics website (http://www.expasy.org/tools). Numbers denote amino acid number. x, locations of mutations in original cps2K mutants. or , locations of mutations contained in additional cps2K mutants. Numbers in parentheses represent the numbers of mutants with the same mutation. * and , amino acid changes found in cps2H and cps2J mutants, respectively. The DXD motif in the cytoplasmic domain is indicated.
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The S. enterica WbaP protein is bifunctional, with the C-terminal cytoplasmic domain containing the glycosyltransferase activity and the N-terminal domain proposed to be important in releasing Und-P-P-galactose from WbaP and preferentially allowing the release of completed subunits (62). Such a role could fit with the phenotypes observed for the Cps2K mutants and the frequent occurrence of suppressor mutations in Cps2E; i.e., if the repeat unit remains associated with Cps2E until complete, the lack of GlcUA would block synthesis, resulting in the accumulation of lipid-linked repeat units on the inner face of the cytoplasmic membrane. Suppressor mutations in Cps2E that relaxed the requirement for a complete repeat unit could allow some synthesis to continue. As discussed above, however, the lack of GlcUA would still be an impediment to capsule synthesis due to its requirement for transfer to the cell wall.
Conclusions. The results of these studies demonstrate that the inability to properly assemble the capsule can be detrimental to the cell, and mutants affected in the assembly process may carry suppressor mutations that affect the phenotypes observed. Although we began the studies with a focus on the role of the side chain, the results strongly point toward Cps2E, the initiating glycosyltransferase, as a central player in the control of polymer assembly. Identifying the further roles of Cps2E and determining the requirements for cell wall association of the polymer are essential to fully understanding the capsule assembly process. The use of cps2K and other deletions to readily generate mutations in cps2E provides a unique means for potentially identifying proteins with which Cps2E interacts and for characterizing a class of glycosyltransferases that is widespread in nature. In addition, the ability to block capsule synthesis at intermediate stages by targeting functionally equivalent enzymes present in many bacteria could provide a novel therapeutic approach to bacterial infections that would be effective because of loss of an important virulence factor and detrimental effects on cell viability.
This study was supported by Public Health Service grants AI28457 and T32 AI07041 from the National Institutes of Health.
Published ahead of print on 23 February 2007. ![]()
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