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Journal of Bacteriology, May 2007, p. 3525-3531, Vol. 189, No. 9
0021-9193/07/$08.00+0 doi:10.1128/JB.00044-07
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Laboratory of Molecular Genetics,1 Laboratory of Microbial Development,2 Laboratory of Bacterial Cell Biology,3 Instituto de Tecnologia Química e Biológica da Universidade Nova de Lisboa, 2780 Oeiras, Portugal, and Laboratory of Microbiology, The Rockefeller University, 1230 York Avenue, New York, New York 100214
Received 9 January 2007/ Accepted 8 February 2007
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The primary amino acid structure of PBP1 shows a high degree of similarity to the sequences of PBP2B and SpoVD from Bacillus subtilis, PBP2X from Streptococcus pneumoniae, and PBP3 from Escherichia coli (33). All of these proteins are high-molecular-weight (HMW) class B PBPs, composed of a C-terminal domain with conserved transpeptidase motifs and an N-terminal domain of as-yet-unknown function (6, 7). Several lines of evidence indicate that PBP2B of B. subtilis, the pneumococcal PBP2X, and PBP3 of E. coli are involved in cell division (2, 20, 27, 34), consistent with their location in division and cell wall (dcw) synthesis clusters on the chromosome (28).
An earlier study by Pucci and colleagues has determined the chromosomal location of S. aureus pbpA in a dcw cluster together with other determinants, such as mraY, divIB, ftsA, and ftsZ (28), and a role for PBP1 in cell division of S. aureus has been proposed (22).
PBP1 of S. aureus was reported to be essential for growth because disruption of the chromosomal pbpA copy was lethal unless additional copies of the gene were present on a plasmid (33). However, the specific role(s) of PBP1 and its cellular address has not been investigated in detail.
The purpose of the studies described here was to construct a pbpA conditional mutant and use it to better define the essentiality of PBP1 for growth, to determine the contribution of PBP1 to the chemical structure of peptidoglycan, and to explore its role in cell division of S. aureus.
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was used for plasmid construction and propagation. |
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TABLE 1. Strains and plasmids
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as described (23), generating COL-SspacP1 and COLspacP1, respectively. Growth of pbpA conditional mutants and depletion of PBP1. Overnight cultures were diluted to an OD620 of 0.05 in fresh TSB with IPTG (500 µM) and incubated at 37°C in an orbital shaker at 180 rpm for four generations. This "refreshment" step allowed the cells to leave stationary phase. Cultures were then washed with fresh TSB to remove IPTG and diluted to an OD620 of 0.05 in medium without IPTG and with different inducer concentrations (35, 50, 80, and 500 µM).
To deplete the conditional mutants of PBP1, an extra incubation step was introduced into the procedure. After the initial "refreshment" growth step, the cultures were diluted to an OD620 of 0.05 in medium without IPTG, incubated at 37°C in an orbital shaker at 180 rpm, and monitored carefully by OD620 measurements. Just before a complete halt in the increase of the OD, the bacteria were rediluted to an OD620 of 0.05 in fresh growth media containing different concentrations of IPTG, and their rates of growth were monitored.
Complementation assay. A 2.9-kb fragment that included the complete pbpA coding sequence and 300 bp upstream of it was amplified from COL DNA by PCR using primers pbp1FPstI (5'-GTATACTGCAGCAACAACCAC-3' [PstI site underlined]) and pbp1RBamHI (5'-CAGGGATCCTCTTCTTAATCCAGAC-3' [BamHI site underlined]). The amplified pbpA fragment and plasmid pSK5632 (8) were digested with PstI and BamHI and ligated, generating pSKP1. The replicative plasmid pSKP1 was introduced into RN4220 by electroporation and subsequently transferred to COLspacP1 by transduction, generating COLspacP1pSKP1.
Analysis of pbpA transcription by real-time RT-PCR. COL and COLspacP1 were grown in TSB and/or TSB supplemented with 35, 50, 80, and 500 µM IPTG. Samples were collected at an OD620 of 0.8 (corresponding to the OD at which COLspacP1 grown without IPTG stopped growing), and total RNA was isolated as described previously (31). An on-column DNase digestion using RNase-free DNase (QIAGEN, Valencia, CA) was performed to remove residual DNA. RNA was isolated from three independent cultures. The transcription levels of pbpA were determined by two-step real-time reverse transcriptase PCR (RT-PCR) using the relative standard curve method (user bulletin no. 2; Applied Biosystems Inc.). cDNA was generated by RT with 1 µg of DNase I-treated total RNA and TaqMan reverse transcription reagents with random hexamers (Applied Biosystems) in a total volume of 100 µl. The reaction mixture was incubated at 25°C for 10 min, 48°C for 30 min, and 95°C for 5 min. Real-time PCR was carried out with an ABI Prism 7900 sequence detection system (Perkin-Elmer Applied Biosystems). PCRs were performed, and mixtures included 1x iTaq SYBR green Supermix with ROX (Bio-Rad), 200 nM (each) forward and reverse primers, 5 µl of 1:5 dilutions of cDNA, and water to a final volume of 25 µl. Primers were as follows: PBP1forwardRT (5'-TTTTAGCATACAGTCAGCGACCA-3') and PBP1reverseRT (5'-TCCAGGCTCGTATGTGTTTTGA-3') were used for pbpA amplification, and primers ptaForRT (5'-AGAAGCAATCATTGATGGCGA-3') and ptaRevRT (5'-ACCTGGCGCTTTTTTCTCAG) were used for pta amplification. The following conditions were used: 95°C for 10 min and 40 cycles of 95°C for 15 s and 60°C for 1 min. Each PCR plate contained two replicates of each sample cDNA and standard curves for each gene. These standard curves were made with six serial twofold dilutions of COL chromosomal DNA (from 2.5 ng to 78.1 pg). The specificity of the amplified products was verified by analysis of the dissociation curves generated by the ABI 7900 software based on the specific melting temperature for each amplicon. The melting curves of the PCR products were obtained by stepwise increases in the temperature from 60°C to 90°C. For all experiments, the amount of target (pbpA) and endogenous control (housekeeping gene pta) was determined from the respective standard curve by conversion of the mean threshold cycle values. Normalization was then obtained by dividing the quantity of pbpA by the quantity of pta. The normalized values of pbpA of COLspacP1 grown with the different IPTG concentrations were then divided by the normalized value of pbpA in COL and expressed as an n-fold difference relative to COL.
Electron microscopy. Strain COL was grown in TSB, and COLspacP1 was grown in TSB or TSB with 500 µM IPTG. When COLspacP1 grown in the absence of IPTG stopped growing (as indicated by no increase in the OD620 determined at three consecutive 10-min intervals), samples for electron microcopy were collected, centrifuged, fixed with 2.5% glutaraldehyde in 0.1 M cacodylate buffer (pH 7.0), and processed for electron microscopy according to the procedure of Ryter et al. (30), as modified by Tomasz et al. (32).
Fluorescence microscopy. COLspacP1 was grown in TSB or TSB with 500 µM IPTG. Samples were collected at an OD620 of 0.8, corresponding to the OD at which COLspacP1 grown without IPTG stopped growing. Cell membranes of live cells were stained with Nile red (Molecular Probes Inc., Eugene, OR) at a final concentration of 8 µg/ml for 5 min at room temperature without agitation. Fluorescence microscopy was performed with a Leica DMRA2 microscope coupled to a CoolSNAP HQ Photometrics camera (Roper Scientific, Tucson, AZ).
Immunofluorescence microscopy. Strain LH607 was grown to an OD620 of 0.7, and a sample was harvested and prepared for immunofluorescence essentially as described previously (26). Briefly, cells were fixed with the fixative Histochoice (Amresco) and lysed for 1 min on a polylysine-treated slide with lysostaphin (Sigma) at a final concentration of 10 µg/ml. Immunolabeling was performed overnight at 4°C with anti-PBP1 antiserum diluted 1:800 in 2% bovine serum albumin in 1x phosphate-buffered saline. Cells were washed and incubated for 1 to 2 h at room temperature with anti-rabbit immunoglobulin G-fluorescein isothiocyanate conjugate (Sigma) diluted 1:500 in 2% bovine serum albumin in 1x phosphate-buffered saline. Cells were again washed, and Vectashield mounting medium (Vector Laboratories) was added. Cells were visualized by phase-contrast and fluorescence microscopy in a Leica DMRA2 microscope coupled to a CoolSNAP HQ Photometrics camera.
Peptidoglycan composition. A COL culture and a COLspacP1 culture previously depleted of PBP1 were used to inoculate 500 ml of TSB (COL) and TSB supplemented with 50 µM and 500 µM IPTG (COLspacP1). Cultures were rediluted to an OD620 of 0.025 and grown to an OD620 of 0.3 and were harvested for the preparation of cell walls. Cell walls were isolated, peptidoglycan purified, and digested with muramidase, and the muropeptide composition was determined by reversed-phase high-performance liquid chromatography (HPLC), as previously described (3).
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FIG. 1. Construction of the pbpA conditional mutant. An 850-bp fragment of pbpA containing the ribosome-binding site was cloned downstream of the Pspac promoter in the integrative vector pMGPI. The resulting plasmid, pMGPA, was introduced into S. aureus RN4220 by electroporation and was integrated into the chromosome by a Campbell-type recombination event. The only complete copy of pbpA in the resulting strain is under Pspac control. The fusion was subsequently moved to the COL and COL-S strains by transduction to yield COLspacP1 and COL-SspacP1, respectively.
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FIG. 2. Essentiality of pbpA expression for S. aureus growth and transcription of pbpA in the mutant strain COLspacP1 grown with different inducer concentrations. (A) Representative growth curves of pbpA conditional mutants COL-SspacP1 ( ) and COLspacP1 () in the absence (dashed line) and presence (solid line) of 500 µM IPTG. (B) Representative growth curves of the parental MRSA strain COL ( ) and its mutant COLspacP1. The mutant was depleted of PBP1 and grown in the absence of IPTG ( ) and in the presence of 35 µM (x), 50 µM ( ), 80 µM ( ), and 500 µM () concentrations of inducer. (C) Representative growth curves of COL ( ), COL with pSK5632 ( ), COLspacP1 in the absence of IPTG ( ) and in the presence of a 500 µM concentration of inducer (), and COLspacP1 with pSKP1 in the absence of inducer (+). (D) COLspacP1 was grown in increasing concentrations of inducer (see panel B), and the relative abundance of the pbpA transcript was expressed as an n-fold difference relative to COL. The transcription levels of pbpA were normalized to the levels of the housekeeping gene pta.
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The abundance of the pbpA transcripts in COLspacP1 grown with different IPTG concentrations was also analyzed by real-time RT-PCR. For each sample, pbpA values were normalized to the values of the housekeeping gene pta, used as the endogenous control, and expressed as an n-fold difference relative to COL. The successful induction of pbpA transcription was confirmed, and the amount of pbpA transcript was found to vary according to the inducer concentration present in the medium (Fig. 2D). The mutant grown with the optimal IPTG concentration (500 µM) showed an increase of approximately 1.4 times the level of pbpA transcript in the parental strain, COL.
Deficit in growth rate in the pbpA conditional mutant. The complementation experiments clearly show that the dependence of growth of the conditional pbpA mutants on the IPTG inducer is related to the production of PBP1. By increasing the concentration of IPTG in the medium, it was possible to increase the growth rate of the pbpA conditional mutants. Nevertheless, we were never able to fully restore the growth rate of the parental strain in the conditional mutants even by supplying the highest concentrations of the inducer. The reasons for this are not clear. The possibility of insufficient expression of pbpA from the Pspac promoter was disproved by the analysis of pbpA transcription, which actually showed an increase in the level of pbpA transcript in COLspacP1 grown with optimal IPTG concentration. In E. coli and B. subtilis, many of the genes in the dcw cluster are cotranscribed in the form of long polycistronic messages, and this coordinate expression is important for normal growth (9, 10, 13, 18, 29). In the case of the S. aureus conditional mutants described here, pbpA is expressed from its native locus but not under the control of its native promoter. Furthermore, even though we have shown that the growth defect in COLspacP1 was unlikely to be caused by a polar effect, the dcw cluster is interrupted by integration of the Pspac-pbpA-bearing construct (Fig. 1). The inability to fully restore normal growth to the conditional mutant may be interpreted in the context of the genomic channeling hypothesis, according to which the clustering of dcw genes would favor the cotranslational assembly and function of cell division and peptidoglycan precursor synthesis complexes (19).
Changes in cell morphology during residual growth of COLspacP1 in IPTG-free medium. COLspacP1 was grown without IPTG, and the OD, viable titer, and morphology of the bacteria were tested. A parallel culture supplemented with the optimal concentration of IPTG was used as a control. After resuspension in IPTG-free medium, COLspacP1 continued to increase in OD, from an initial OD620 of 0.05 to 0.8 (Table 2). However, the initial viable titer showed only a minor increase, completely disproportionate with the 16-fold increase in OD. In the control culture, the increase in viable titer showed a precise parallel with the increase in OD.
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TABLE 2. Inhibition of cell division and abnormal morphology in COLspacP1 cells grown without IPTG
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FIG. 3. Morphology of the parental strain COL and its pbpA conditional mutant, COL-spacP1, grown in the absence of IPTG. Strain COL was grown in TSB, and COLspacP1was grown either in TSB or in TSB supplemented with 500 µM IPTG. Thin sections were processed for transmission electron microscopy to document differences in the size and morphology of the parental strain, COL (A and B), and the mutant, COLspacP1, grown in the absence of IPTG (C and D). Specimens labeled 1, 2, and 3 (in panels C and D) are representative of subpopulations 1, 2, and 3, respectively, of COLspacP1 grown in the absence of inducer (see panel F and the text for details). (E and F) Ratio between the axes defined by the equatorial (septal) and the longitudinal planes of cells of COL (black circles) and COLspacP1 grown in the absence of inducer (empty red circles) or in the presence of 500 µM IPTG (filled red circles). For the purpose of this analysis, both the longitudinal and the equatorial lengths were measured from every cell within the electron microscopy field. (G) Fluorescence images of membrane-stained representative specimens of COLspacP1 grown in the presence of IPTG and of the three subpopulations that appear when the mutant is grown in the absence of inducer. (H) Percentages of cells that show septa (completed and/or incomplete, located at the normal equatorial position) or completed septa. Black bars, strain COL; empty red bars, COLspacP1 cells grown in the absence of IPTG; filled red bars, COLspacP1 cells grown in the presence of 500 µM IPTG.
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The existence of the distinct subpopulations when COLspacP1 was grown in the absence of inducer was confirmed by fluorescence microscopy using the dye Nile red to stain membranes of live cells (Fig. 3G), and quantitative evaluations of the morphologies by this method (data not shown) gave results identical to those illustrated in Fig. 3F.
We do not presently know whether the aberrant morphologies observed in bacteria "growing" with inhibited pbpA transcription correspond to cells with different degrees of the deleterious effects caused by depletion of PBP1 or whether they reflect the heterogeneity of the population and represent cells that were at different stages of the cell cycle when cell division was blocked by the lack of PBP1.
PBP1 and the formation of septa. Both COL and COLspacP1 grown without IPTG showed the same proportion of cells with signs of septation (around 80%). However, cells with complete septa represented around 90% of the COL population (Fig. 3A and H), while cells with complete septa were present in only about 15% of the COLspacP1 mutant population grown without IPTG (Fig. 3C and H). Interestingly, we note that depletion of pbpA does not seem to perturb division site selection, as most cells in the mutant population show correct placement (at midcell) of the septum even though cells with completely formed septa were rarely observed in cultures of COLspacP1 in the absence of inducer (Fig. 3). Moreover, the rare COLspacP1 cells with complete septa showed thickened equatorial cell walls. The incomplete septa may have been initiated when PBP1 was still available but were not completed due to the depletion of PBP1. Another possibility that we cannot presently exclude is that PBP1 may function only at a late stage in septum formation.
In any event, the inhibition of cell division eventually leads to cells with increased size, which appear to be enveloped by a cell wall of normal thickness. The source of this cell wall material is not clear; it may result from cell wall synthesis that continues in the absence of PBP1 or may involve the redistribution of cell wall from the incomplete septa produced when PBP1 was still available.
Localization of PBP1. The striking changes in cell division detected in the pbpA conditional mutant raised the question of whether PBP1 localized to division sites in S. aureus. We therefore examined the subcellular localization of PBP1 by immunofluorescence using a rabbit anti-PBP1-raised polyclonal antibody. To prevent unspecific binding of the antibody, the protein A mutant strain LH607 was used in these experiments. The fluorescence signal was localized in the septum (Fig. 4), as was the case for COLspacP1 grown with 500 µM IPTG, whereas the same mutant strain depleted of PBP1 showed only background fluorescence (data not shown).
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FIG. 4. PBP1 localization by immunofluorescence. Panels show selected specimens from the same field. White arrows indicate the localization of the florescence signal in septa. Phase contrast (PHC) images are shown in the first column, and florescence (FL) images are shown in the second column, followed by a schematic representation of the cells shown in each panel.
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FIG. 5. Peptidoglycan HPLC profiles for strains COL and COLspacP1 grown with optimal (500 µM) and suboptimal (50 µM) IPTG concentrations. The deficit of PBP1 did not have a significant impact on peptidoglycan composition. The only alteration observed in the HPLC profile of the mutant grown with the suboptimal IPTG concentration was a decrease in peak 1 (identified in the chromatogram), corresponding to the unsubstituted disaccharide pentapeptide monomer.
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The observations described in this communication show that the main phenotypic consequences of PBP1 depletion in S. aureus occur at the level of septum formation. This finding, together with the localization of PBP1 in the septum, strongly suggests that the essential role of PBP1 in S. aureus is linked to some specific function of this protein in cell division. The nature of this function is currently under investigation.
Partial support for this study was provided by a grant (2 RO1 A1045738-06) from the National Institute of Health, U.S. Public Health Service, to A.T. and by contracts from Fundação para a Ciência e a Tecnologia, Portugal: POCTI/BIA-MIC/58416/2004 to H.L. and POCI/BIA-BCM/56493/2004 to M.G.P. S.F.F.P. was supported by grant SFRH/BD/9185/2002 from Fundação para a Ciência e Tecnologia.
Published ahead of print on 16 February 2007. ![]()
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