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Journal of Bacteriology, August 2008, p. 5404-5411, Vol. 190, No. 15
0021-9193/08/$08.00+0 doi:10.1128/JB.00415-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.
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Department of Molecular Biology, Tokyo University of Pharmacy and Life Science,1 Department of Chemical Analysis, Tokyo University of Pharmacy and Life Science, 1432-1 Horinouchi, Hachioji, Tokyo 192-0392, Japan2
Received 25 March 2008/ Accepted 26 May 2008
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FIG. 1. Structures of polar lipids found in T. acidophilum HO-62 (26). In the far right column, the HPLC retention times (r.t.) of the polar lipids obtained under the conditions described in Materials and Methods are shown. H, Gp, Gul, Man, and Glc represent the proton, glycerophosphate, gulose, mannose and glucose, respectively. Abbreviations of the polar lipids used are as follows: AGp, archaetidylglycerol; CGp, caldarchaetidylglycerol; GuC, gulopyranosyl-(β1-1)-caldarchaeol; GuCGu, gulopyranosyl-(β1-1)-(gulopyranosyl-(β1'-1')-)-caldarchaeol; GuCGp, gulopyranosyl-(β1-1)-caldarchaetidylglycerol; MGuC, mannopyranosyl-( 1-3)-gulopyranosyl-(β1-1)-caldarchaeol; MGuCGu, mannopyranosyl-( 1-3)-gulopyranosyl-(β1-1)-(gulopyranosyl-(β1'-1')-)-caldarchaeol; MGuCGp, mannopyranosyl-( 1-3)-gulopyranosyl-(β1-1)-caldarchaetidylglycerol; DMGuC, mannopyranosyl-( 1-3)-mannopyranosyl-( 1-3)-gulopyranosyl-(β1-1)-caldarchaeol; DMGuCGp, mannopyranosyl-( 1-3)-mannopyranosyl-( 1-3)-gulopyranosyl-(β1-1)-caldarchaetidylglycerol; TMGlC, trimannopyranosylglucosylcaldarchaeol; TMGuCGp, mannopyranosyl-( 1-3)-(mannopyranosyl)2-( 1-3)-gulopyranosyl-(β1-1)-caldarchaetidylglycerol. The number of cyclopentane rings in a caldarchaeol molecule varies from zero to six.
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Thermoplasma acidophilum is a facultative anaerobic, thermophilic, and acidophilic archaeon which grows optimally at pHs ranging from 1 to 2 and 55 to 59°C. This microorganism does not have a cell wall outside its cell membrane. Previously, we developed an analytical method for determining the structures of several newly discovered polar lipids of T. acidophilum HO-62 (26). The structures and abbreviations of polar lipids of T. acidophilum are listed in Fig. 1. There are two types of core lipids, archaeol and caldarchaeol. Glycolipids have different combinations of gulose, mannose, and glucose, which form mono- or oligosaccharides on one or both sides of caldarchaeol. Phosphoglycolipids with two polar head groups on both sides of the caldarchaeol have glycerophosphate as the phosphoester moiety on one side and gulose alone or gulose and mannose, which form mono- or oligosaccharides as the sugar moieties, on the other side. Both the archaeol and the caldarchaeol types of phospholipids have a glycerophosphate group on one side.
These lipids may contribute to the organisms' adaptation to extremely low pHs and high temperatures. The number of cyclopentane rings in the caldarchaeol moiety in a thermophilic archaeon varies with growth temperature (11, 30, 31). The variation is considered to be an adaptation to different temperatures by adjusting membrane fluidity (15). The investigation of the variations in lipid profiles in archaea grown under different conditions may reveal the responses of polar lipids and determine how archaea can adapt to extreme environments.
The liposome made of polar lipid from T. acidophilum 122-1B3 (ATCC 27658), which contains mainly caldarchaeol as the hydrocarbon core, showed low permeability to protons, water, and some solutes compared to that of the liposome made of lipid from Escherichia coli (23). Bagatolli et al. showed that the liposomes made of archaeal lipid from Sulfolobus acidocaldarius are rigid and tightly packed (3). Since many archaea live in extreme environments, their cells may require particularly tough membranes. These studies are based on the analysis of the physical properties of liposomes and are focused mainly on the hydrocarbon core, although many types of polar head groups have been reported (14, 27).
The analysis of polar head groups from thermophilic and acidophilic archaea has been difficult, because archaeal polar residues are diverse, and residues have portions with unique structures such as those of calditol (28) and gulose. We have shown that archaeal lipids without UV absorbance can be separated and detected using ELSD-HPLC (26). In this study, to determine the contribution of polar lipids to the organism's adaptation to extreme environments, we grew T. acidophilum HO-62 in a medium at different pHs and temperatures. Each polar lipid of T. acidophilum was quantified. The number of cyclopentane rings in caldarchaeol in the lipids of the archaeon grown under different conditions was also determined using ELSD-HPLC. Furthermore, the proton permeability of the liposome obtained from phosphoglycolipids that contained two, three, and four sugar units was compared with that of the liposome obtained from phosphoglycolipids that contained one sugar unit.
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Chemicals. HPLC grade chloroform and methanol were obtained from Nacalai Tesque, Inc. (Kyoto, Japan). L-Gulose was purchased from Tokyo Chemical Industry Co., Ltd. (Tokyo, Japan). All the other chemicals used were of analytical grade.
Organism and cultivation. T. acidophilum HO-62 was statically grown at the desired temperatures in 1 liter of the medium described by Yasuda et al. (32); the pH of the medium was adjusted to the desired pHs by using sulfuric acid. Cultivation was repeated three times under each condition. Lipids were extracted from cells from each culture independently.
Extraction of polar lipids. The polar lipid extraction process using the Bligh and Dyer method (4) was described previously (26). Lyophilized cells were suspended in chloroform-methanol-water (4:1:5 [vol/vol/vol]), and then chloroform-water (1:1 [vol/vol]) was added to the suspension. The lower chloroform phase was collected. The upper aqueous phase, including the fluff layer and the insoluble sediment, was extracted two times with chloroform. The chloroform extracts were pooled and evaporated. The residue was designated TPL1. The aqueous layer was lyophilized. Polar lipids that remained in the lyophilized aqueous layer were reextracted using chloroform-methanol (2:1 [vol/vol]). The reextraction was repeated five times. The pooled solution was evaporated and designated TPL2. The proportions of TPL1 and TPL2 in the total polar lipids were about 75% dry weight and 25% dry weight, respectively.
Separation of polar lipids by ELSD-HPLC. TPL1 and TPL2 were separately applied to a Capcellpak silica SG80 column (2.0 mm [inside diameter] by 250 mm [length]; 5-µm particle size; Shiseido, Tokyo, Japan) at 35°C, attached to an LC10A HPLC system (Shimadzu, Kyoto, Japan) and were monitored with an Alltech model 500 ELSD (Deerfield, IL). Nebulization was carried out with compressed air at a flow rate of 2.0 liters/min at 80°C. The eluents used were as follows: H1, chloroform; H2, chloroform-methanol-trifluoroacetic acid (50:50:1 [vol/vol/vol]); and H3, chloroform-methanol-trifluoroacetic acid (10:10:1 [vol/vol/vol]). The polar lipids were separated with gradients of H1 and H2, with the program H2 %(min) 0(0)-10(2)-50(42)-100(62), at a flow rate of 0.25 ml/min. After each analysis, the column was washed with H3.
Quantification of polar lipids. GuCGp, the main polar lipid of T. acidophilum, purified from the total amount of polar lipid from a 50-liter culture (26), was used as the polar lipid standard. GuCGp was diluted, and 10 µl of the appropriate dilution was subjected to ELSD-HPLC. The peak area of GuCGp in the HPLC chromatogram was plotted and used as the standard curve.
Analysis of core lipids. TPL1 and TPL2 were mixed, and polar lipids were decomposed to methylglycosides and caldarchaeol by acid methanolysis, according to the methods described by Yang and Haug (31). The caldarchaeol remaining in the hexane layer after acid methanolysis was applied directly to the ELSD-HPLC system, as described above. ELSD nebulization was performed with compressed air at a flow rate of 1.6 liters/min at 55°C. An Adsorbosphere NH2 column (2.0 mm [inside diameter] by 250 mm [length]; 3-µm particle size; Alltech, Deerfield, IL) was used, and the column temperature was maintained at 30°C. The eluent used was J1 (n-hexane-1-propanol; 99:1 [vol/vol]). Caldarchaeol samples containing different numbers of cyclopentane rings were separated with J1 at a flow rate of 0.4 ml/min. To identify the HPLC peaks, caldarchaeols were collected by splitting the solvent line before the detector. The mass number of the component in each HPLC fraction was measured by liquid SIMS. Liquid SIMS was performed at an acceleration voltage of 7 keV, using an Autospec E mass spectrometer (Micromass Inc., Manchester, England) equipped with a SIMS probe. Dithiothreitol-dithioerythritol (3:1 [vol/vol]) was used as the matrix.
Biphytanyl chains in caldarchaeol were investigated by GC. Each caldarchaeol collected from the HPLC peaks was decomposed to two biphytanyl alcohols, which were converted to their TMS derivatives and analyzed by GC with a flame ionization detector as described previously (26). Each GC peak was identified by GC-MS using a Hewlett-Packard model HP5890 gas chromatograph (Avondale, PA) attached to an Autospec E mass spectrometer (Micromass Inc., Manchester, England) equipped with an EI-MS probe operated at a 70 eV ionization voltage. The GC procedure is described in the legend to Fig. 3.
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FIG. 3. (A) GC chromatograms of TMS derivatives obtained from caldarchaeols corresponding to HPLC peaks shown in Fig. 2. (B) Structures corresponding to caldarchaeols shown in panel A. Caldarchaeols collected from the HPLC peaks in Fig. 2 were decomposed to biphytanyl alcohols and then converted to their TMS derivatives. TMS-biphytanyl alcohols were analyzed by GC using an HP-5ht capillary column (0.3 mm inside diameter by 30 m; thickness of film [df] = 0.1 µm) at a temperature gradient of 200°C to 350°C with an incremental step of 10 degrees/min and monitored with a flame ionization detector. The number of cyclopentane rings in the biphytanyl chains shown in the GC chart was identified previously (26).
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Liposome preparation. The polar lipid in the TPL2 fraction was applied to a silica gel (Wakogel C200, 100/200 mesh; Wako Pure Chemical Industries, Ltd., Osaka, Japan) column (10 mm [inside diameter] by 100 mm [length]) equilibrated with chloroform. After the elution of low-polarity lipids with chloroform, GuCGP was eluted with chloroform-methanol (3:2 [vol/vol]). GuCCp is a phosphoglycolipid that contains one sugar unit in the structure. The other phosphoglycolipids, named MGuCGp, DMGuCGp, and TMGuCGp, that contain two, three, and four sugar units, respectively, were eluted with methanol. The chloroform-methanol (3:2 [vol/vol]) and methanol fractions were dried with nitrogen gas, dissolved separately in chloroform-methanol (2:1 [vol/vol]), and designated chloroform-methanol fractions (Fr. CM) and methanol fractions (Fr. M), respectively.
Each fraction corresponding to 100 µg of lipid was put into a glass test tube, and valinomycin was added to the solution to make 1 nmol/mg lipid. The solutions were dried with nitrogen gas. A buffer solution containing 2 mM pyranine, 5 mM potassium phosphate (pH 7.0), and 0.1 M potassium chloride was then added to the residue, and the mixture was preheated at 70°C for 30 min to hydrate the lipids. A liposome suspension was prepared by sonication using an ultrasonicator VS-100 machine (Asone, Osaka, Japan) for 2.5 min at 70°C. The size of the liposomes was then adjusted to about 0.1 µm by using a Mini-Extruder (Avanti, Alabaster, AL). The resulting lysate was dialyzed against a pyranine-free buffer (5 mM potassium phosphate and 0.1 M potassium chloride [pH 7.0]). The internal pH of the liposomes was estimated by the method described by Kano and Feneler (18). Standard solutions containing 0.33 µM pyranine, 5 mM potassium phosphate, and 0.1 M potassium chloride at pHs of 5.0, 5.5, 6.0, 7.0, and 7.5 were prepared. The fluorescence of pyranine was measured with an RF-5300PC model (Shimadzu, Kyoto, Japan) spectrophotofluorometer at 50°C in a thermostatted holder. For the calibration curve, the logarithm of the ratios of the emission intensities (I) at 510 nm on excitation at 460 and 400 nm, log (I460 nm/I400 nm), was plotted against the pHs of the standard solutions. The internal pH of the liposomes was estimated from the calibration curve. The liposome suspension was diluted with the buffer (pH 7.0). The diluted liposome suspension (60 µl) was then mixed with the buffer (540 µl) containing 5 mM potassium phosphate and 0.1 M potassium chloride (pH 3.6). Fluorescence was measured for 30 min at 50°C.
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FIG. 2. HPLC chromatograms of caldarchaeols with different numbers of cyclopentane rings, which are indicated beside their respective peaks. The caldarchaeols obtained from the cultures grown at different temperatures at pH 1.8 (A) and at 55°C at different pHs (B) are shown. The analytical conditions shown are described in Materials and Methods.
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Effects of pH and temperature on polar lipid composition in T. acidophilum HO-62. TPL1 and TPL2 extracted from T. acidophilum grown at different pHs and temperatures were analyzed by ELSD-HPLC. A typical chromatogram is shown in Fig. 4. The peaks observed with the chromatogram have been identified previously (26), and the structures of polar lipids are summarized in Fig. 1. The retention time of each component is also listed in Fig. 1. GuCGp, a main polar lipid of T. acidophilum, eluted at 22.5 min. MGuCGp and DMGuCGp, phosphoglycolipids in which one and two mannose residues, respectively are attached to gulose of GuCGp, eluted at 38.3 and 47.3 min, respectively. Polar lipids with more polar residues tended to elute at later times.
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FIG. 4. HPLC chromatogram of TPL1, the chloroform extract obtained from T. acidophilum grown in medium at pH 1.2. Figure 1 shows the abbreviations and structures of the polar lipids. The asterisk (*) indicates the peak of an unknown component. HPLC was performed with a Capcellpak silica SG80 column (2.0 mm [inside diameter] by 250 mm [length]) and monitored by ELSD. The eluents used were H1, chloroform, and H2, chloroform-methanol-trifluoroacetic acid (50:50:1 [vol/vol/vol]). The gradient program was H2 %(min) 0(0)-10(2)-50(42)-100(62) at 35°C at a flow rate of 0.25 ml/min.
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FIG. 5. Calibration curves for GuCGp. Analytical conditions are described in Materials and Methods. The area under the peak of ELSD-HPLC was plotted against the weight of the standard GuCGp injected.
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TABLE 1. Composition of polar lipids in T. acidophilum HO-62a
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The general trends in the polar lipid compositions against pH and temperature can be seen in Table 2. The total amount of phosphoglycolipids was low at low pHs and high temperatures, whereas the total amounts of glycolipids and phospholipids were high at low pHs and high temperatures. The relative amounts of the polar lipids with zero to one sugar unit were low at low pHs and high temperatures, whereas those of the polar lipids with two to four sugar units were high under these conditions.
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TABLE 2. Effects of pH and temperature on lipid composition
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FIG. 6. Hydrolysis of GuCGp. The chromatograms were obtained from the GuCGp that was exposed to distilled water adjusted to pH 1.8 and incubated at 56°C for 3 days. Panels A and B show the chromatograms before and after incubation, respectively.
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FIG. 7. Internal pH of liposomes obtained from different phosphoglycolipid fractions. Fluorescence was measured after 60 µl of the liposome suspension (pH 7.0) was mixed with 540 µl of the buffer (pH 3.6). The ratio of emission intensities at 510 nm with excitation at 460 and 400 nm, I460/I400, was plotted. The internal pH of liposomes was estimated from the calibration curve (as described in Results). Closed circles indicate the liposomes obtained from Fr. CM, consisting of GuCGp. Open circles indicate the liposomes obtained from Fr. M, consisting of MGuCGp, DMGuCGp, and TMGuCGp. Each bar indicates the means ± standard deviations (n = 6). Unpaired Student's t test was used to determine the significance between the liposomes made of Fr. CM and Fr. M. Asterisks indicate a significant difference between corresponding data (P < 0.05).
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T. acidophilum grows optimally at pH 1 to 2 and at 55 to 59°C. The plasma membrane of T. acidophilum is directly exposed to the extracellular environment owing to the lack of a cell wall. When GuCGp, the main component of lipids of T. acidophilum, was exposed to pH 1.8 and 56°C, the glycerophosphate residue was hydrolyzed but the sugar residue was not (Fig. 6). The ether linkages in caldarchaeol were chemically stable under these conditions, as expected, but the phosphoester linkage was not. Asymmetry of archaeal polar lipids has been investigated in Sulfolobus solfataricus (formerly Caldariella acidophila) (9) and Methanobacterium thermoautotrophicum (24). The sugar moieties of such lipids are outside the cells of these archaea.
To examine the amount of glycolipids under extreme environments, T. acidophilum was grown at different pHs and temperatures, and the lipid composition was investigated. The amount of glycolipids was high at low pHs and high temperatures. The number of sugar units of glyco(phospho)lipids increased under these conditions (Table 2). Sugar residues are expected to increase on the membrane surface. The proton permeability of the liposomes obtained from Fr. M was lower than that of the liposomes obtained from Fr. CM. Because the Fr. M liposomes contain phosphoglycolipids with longer sugar chains than those of Fr. CM, these lipids are thought to have higher resistance to proton permeability when a membrane is formed.
Although gulose is an unusual sugar in nature, it is the main component of polar lipids of T. acidophilum (29). Gulose, which is directly attached to the caldarchaeol part, was found in most glycolipids in this organism. A low amount of glucose that is also directly attached to caldarchaeol was found in the polar lipids. The ratio of glucose/gulose in the polar lipids was maintained at about 0.1 at the different pHs and temperatures tested (data not shown). The reason a large quantity of gulose is presented in polar lipids of T. acidophilum remains unknown. The lateral diffusion coefficient of liposome membranes made of glycolipids is lower than that of membranes made of phospholipids (2). This was thought to be due to the lateral hydrogen bond network of sugar head groups (2). The sugar chains of lipids of T. acidophilum may also interact with each other via hydrogen bonding. The network with increased sugar units of polar lipids at low pHs may have decreased membrane fluidity. The number of cyclopentane rings may have decreased to increase membrane fluidity at low pHs and to counteract the effect of an increased amount of sugar moieties.
Glycolipids of T. acidophilum are expected to protect the membrane from chemically unstable conditions. It is considered that T. acidophilum can adapt to extreme environments by extending the sugar chains on the cells' surfaces. Because the total number of sugar units is high at low pHs and high temperatures, sugar units have to be added to lipids under these conditions. However, no enzyme directly participating in this process and its regulation has yet been reported. Further investigation is needed to elucidate the adaptation of T. acidophilum to low pH.
In conclusion, the number of sugar units of glyco(phospho)-lipids increased under low pHs and high temperatures in T. acidophilum. Liposomes made of phosphoglycolipids that contain two or more sugar units showed lower proton permeability than those made of phosphoglycolipids that contain one sugar unit. From these results, we propose the hypothesis that T. acidophilum cells adapt to low pH and high temperature by increasing the number of sugar units in their glyco(phospho)lipids.
Published ahead of print on 6 June 2008. ![]()
Supplemental material for this article may be found at http://jb.asm.org/. ![]()
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