Previous Article | Next Article ![]()
Journal of Bacteriology, August 2008, p. 5635-5641, Vol. 190, No. 16
0021-9193/08/$08.00+0 doi:10.1128/JB.00670-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Department of Molecular, Microbial and Structural Biology, University of Connecticut Health Center, Farmington, Connecticut 06030-3305
Received 13 May 2008/ Accepted 6 June 2008
|
|
|---|
2,000 molecules/spore. GerD-FLAG in the inner membrane fraction was solubilized by Triton X-100, suggesting that GerD is a lipoprotein, and the protein was also solubilized by 0.5 M NaCl. GerD-FLAG was not processed proteolytically in a B. subtilis strain lacking gerF (lgt), which encodes prelipoprotein diacylglycerol transferase (Lgt), indicating that when GerD does not have a diacylglycerol moiety, signal sequence processing does not occur. However, unprocessed GerD-FLAG still gave bands corresponding to monomers and dimers of slightly higher molecular weight than that of GerD-FLAG from a strain with Lgt, further suggesting that GerD is a lipoprotein. Upon spore germination, much GerD became soluble and then appeared to be degraded as the germinated spores outgrew and initiated vegetative growth. All of these results suggest that GerD is a lipoprotein associated with the dormant spore's inner membrane that may be released in some fashion from this membrane upon spore germination. |
|
|---|
The gerD gene encodes an
20-kDa protein with a putative 11-amino-acid signal sequence as well as a likely recognition sequence for diacylglycerol addition to a specific cysteine residue near the protein's amino terminus (Fig. 1) (33, 38). GerD homologs are present throughout the bacilli (Fig. 1), although there is no obvious GerD homolog in Clostridium species. The GerD sequence also does not resemble that of any of the nutrient receptors. Transcription of gerD takes place only in the developing forespore compartment of the sporulating cell and is directed by the forespore-specific RNA polymerase sigma factor,
G, as is transcription of the gerA, gerB, and gerK operons (9, 10, 15, 30). Although components of the GerA and GerB receptors have been localized to the spore's inner membrane, the location of GerD is not yet known (7, 23). One report suggests that GerD is in the spore's integument fraction, i.e., the coat plus the cortex (17). However, the putative lipobox in GerD that appears to be essential for GerD function (25) suggests that this protein likely resides in a membrane.
![]() View larger version (13K): [in a new window] |
FIG. 1. Alignment of amino acid sequences of the amino-terminal regions of GerDs from various species. The sequences shown are from B. subtilis, B. licheniformis, Geobacillus stearothermophilis, and B. anthracis. Gray shading indicates similar residues, and black shading indicates identical residues. Residues 1 to 5 and 6 to 16 correspond to the n region and h region of the signal peptide, respectively, and residues 17 to 20 correspond to the lipobox. The asterisk denotes the invariant cysteine that is the site for diacylglycerol addition.
|
Since GerD appears to be a lipoprotein and is synthesized in the same compartment and at approximately the same time as the nutrient germinant receptors, it seems most likely that GerD is located in the spore's inner membrane. Indeed, in this work we demonstrate that GerD is a lipoprotein that is associated with the dormant spore's inner membrane. This localization of GerD in the same membrane as the spore's nutrient germinant receptors may assist in our understanding of the role of GerD in the nutrient receptor-mediated spore germination pathway.
|
|
|---|
95 bp upstream of the translational start codon, was PCR amplified from chromosomal DNA of strain PS832 (all primer sequences are available on request). The forward primer, pFLAGF, introduced a HindIII site into the construct. The reverse primer, pFLAGR, introduced a FLAG tag followed by a translational stop codon and then an EcoRV site. After PCR amplification, the fragment was cloned into plasmid PCR2.1-TOPO (Invitrogen, Carlsbad, CA) in Escherichia coli, giving plasmid pPP01. Upon sequencing of the cloned gerD PCR product, we found that while the third codon in the annotated B. subtilis gerD sequence encodes a lysine, in our strain of B. subtilis this lysine had been replaced by an arginine. Arginine is also found in this position in GerDs from Bacillus anthracis, Bacillus licheniformis, and Geobacillus stearothermophilus (Fig. 1), as well as in GerDs from many other strains and species (data not shown). The gerD fragment in plasmid pPP01 was recovered as a HindIII-EcoRV fragment and cloned into plasmid pDG364 that had been linearized with EcoRI, its ends made blunt with T4 DNA polymerase, and then further digested with HindIII, giving plasmid pPP02. Plasmid pPP02 was then used to transform (1) B. subtilis strain FB62, in which the endogenous gerD gene has been replaced by an Spr cassette, as well as strain PS832, resulting in the insertion of the FLAG-tagged gerD gene at the amyE locus (14). Transformants in which gerD-flag was integrated at the amyE locus were identified by their amyE Cmr phenotype by patching them on plates containing starch and chloramphenicol (5). |
View this table: [in a new window] |
TABLE 1. Strains used in this study
|
Spore preparation, cleaning, and decoating. Spores were produced at 37°C on 2x SG medium agar plates without antibiotics, and spores were harvested and purified as described previously (20). All spore preparations were >98% free of vegetative or sporulating cells, as determined by phase-contrast microscopy. Spores were decoated by treatment for 30 min at 70°C with 0.15 M NaCl-0.1 N NaOH-0.5% sodium dodecyl sulfate (SDS)-0.1 M dithiothreitol and then washed five to seven times with 1 ml water (36). This decoating procedure removes not only the spore coat but also the spore's outer membrane proteins (3, 23, 37).
Spore germination.
Prior to nutrient germination, spores at an optical density at 600 nm (OD600) of 10 in water were heat activated at 70°C for 30 min and cooled on ice. Germination was done routinely at 37°C with spores at an initial OD600 of 1 in 25 mM Tris-HCl (pH 8.4) with either 10 mM L-alanine or AGFK, a mixture of L-asparagine (2.5 mM), D-glucose (5 mg/ml), D-fructose (5 mg/ml), and KCl (50 mM). Spore germination was measured by monitoring the OD600 of spore cultures, which falls
60% upon complete spore germination (2, 4). The extent of spore germination was also confirmed by phase-contrast microscopy. The rate of spore germination was determined from the maximum rate of fall in the OD600 of cultures, as determined from the maximum slope of a plot of OD600 versus time (2, 4).
Preparation and fractionation of dormant spore extracts. Ten milligrams (dry weight) of spores was decoated in 1 ml, washed as described above, and lyophilized. The dry decoated spores were pulverized with 100 mg of glass beads in a dental amalgamator (Wig-L-Bug) at high speed for 20 pulses of 30 s each, with 30-s pauses between pulses (23). Once >80% of the spores were disrupted, as seen by phase-contrast microscopy, the dry powder was suspended in 0.25 to 0.5 ml of 4°C extraction buffer (containing the following [per ml]: 2 µg pancreatic RNase, 2 µg bovine DNase I in 10 mM MgCl2, 50 mM Tris-HCl [pH 7.4], and 1 mM phenylmethylsulfonyl fluoride) (23, 37). After allowing the glass beads to settle for 1 min on ice, the mix was centrifuged at 4°C for 10 min at 14,000 x g. The insoluble fraction was suspended in 0.25 to 0.5 ml extraction buffer and frozen, as was a small amount of supernatant fluid. The remaining supernatant fluid was further centrifuged at 4°C for 1 h at 100,000 x g, giving a pelleted inner membrane fraction (P100) and a soluble fraction (S100) (23, 37). The P100 fraction was suspended by brief sonication in 0.25 to 0.5 ml extraction buffer, and all fractions were mixed 1:1 with 2x SDS-polyacrylamide gel electrophoresis (SDS-PAGE) sample buffer (12) and boiled for 5 min prior to SDS-PAGE and Western blot analysis (see below).
In some experiments, spores were lyophilized, disrupted, and extracted as described above, and Triton X-100 was added to 1% or NaCl was added to 0.5 M to either the suspended P100 or initial insoluble fraction that had been suspended by brief sonication in 0.5 ml extraction buffer. Fractions were incubated at 4°C for 30 min and then centrifuged at 100,000 x g for 1 h as described above.
Preparation of germinated spore extracts.
For preparation of extracts from germinating spores, 1-ml aliquots of heat-activated spores (OD600 of 100) were incubated at 37°C in 60 ml of Luria-Bertani (LB) medium (14) plus 10 mM L-alanine. Spores were harvested at various times by centrifugation at 4°C for 15 min at 10,000 x g and washed five to seven times with 1 ml of water, and the pellet was suspended in 800 µl of 20% Nycodenz (Sigma-Aldrich, St. Louis, MO). Aliquots of
200 µl of the 20% Nycodenz suspension were layered over 2 ml of 50% Nycodenz in ultracentrifuge tubes, and the tubes were centrifuged at 20°C at 100,000 x g for 45 min. The germinated spores, which float because of their low wet density, were isolated and washed several times with water by centrifugation in a microcentrifuge to remove Nycodenz. The pelleted germinated spores were then lyophilized, disrupted, extracted, and fractionated as described above.
Western blot analysis. Samples boiled in SDS-PAGE loading buffer were run by SDS-PAGE (12% acrylamide) (12), and proteins were transferred to a polyvinylidene difluoride (PVDF) membrane (Millipore, Billerica, MA) (6). Western blots were probed with a 1:1,000 dilution of anti-FLAG M2 monoclonal antibody (Sigma-Aldrich, St. Louis, MO) overnight at room temperature and then with a 1:5,000 dilution of goat anti-mouse immunoglobulin G-alkaline phosphatase conjugate (Santa Cruz Biotechnology, Santa Cruz, CA) for 1 h at room temperature, each in 1x Tris-buffered saline (100 mM Tris-HCl [pH 7.5], 150 mM NaCl) with 2% blocking reagent (Roche, Indianapolis, IN) and 0.1% Tween added as described previously (6). Alkaline phosphatase activity was detected on X-ray film by using the chemiluminescent substrate disodium 3-(4-methoxyspiro {1,2-dioxetane-3,2'-(5'-chloro) tricyclo [3.3.1.1.3,7] decan}-4-yl) phenyl phosphate (Roche, Indianapolis, IN). Each SDS-PAGE gel and Western blot also included a sample of a carboxy-terminal FLAG-BAP fusion protein (Sigma-Aldrich, St. Louis, MO) as a positive control and 5 µl of Precision Plus protein standards (Bio-Rad, Hercules, CA) as molecular weight markers.
|
|
|---|
|
View this table: [in a new window] |
TABLE 2. Germination of spores with GerD-FLAGa
|
21 kDa) from both PP17 and PP19 spores, but bands were also seen at the molecular sizes of GerD-FLAG dimers and, in PP19 spores, also trimers, although higher GerD-FLAG oligomers were not detected (Fig. 2A, lanes 2 and 3). Most subsequent experiments in this work used spores of strain PP19, in which GerD-FLAG was overexpressed. While GerD-FLAG expressed from the gerD promoter behaved in a similar manner (data not shown), the overexpressed protein was easier to detect.
![]() View larger version (12K): [in a new window] |
FIG. 2. Detection and localization of GerD-FLAG in spores. (A) Dormant spores of strains PS832 (wild type), PP17 (gerD amyE::gerD-flag), and PP19 (gerD amyE::PsspB-gerD-flag) were disrupted and extracted, aliquots of the total extracts were run by SDS-PAGE, proteins were transferred to a PVDF membrane, and GerD-FLAG was detected with anti-FLAG antibody as described in Materials and Methods. Samples run in the various lanes were from spores of PS832 (1), PP17 (2), and PP19 (3). The numbered lines to the left of the figure denote the migration positions of molecular mass markers, in kDa, and the arrowheads on the right indicate the predicted migration positions of GerD-FLAG monomers (M), dimers (D), and trimers (T). Twice as much extract from PP17 spores was run as the amount of extract from PS832 and PP19 spores. Note that although aliquots with twice the amount of extract from spores of strain PP17 were run in this experiment, the bands from the strains appear to exhibit approximately the same intensity. However, in this experiment, the amount of extract analyzed was very high, probably saturating the assay. (B) Localization of GerD-FLAG in spores. Spores of strain PP19 (gerD amyE::PsspB-gerD-flag) were disrupted, extracted, and fractionated, aliquots of fractions from equal amounts of spores were run by SDS-PAGE, proteins were transferred to a PVDF membrane, and GerD-FLAG was detected as described in Materials and Methods. Samples run in the various lanes were from the following fractions: 1, coat/outer membrane; 2, total extract; 3, insoluble; 4, soluble; 5, S100; and 6, P100. The numbered lines to the left of the figure denote the migration positions of molecular mass markers, in kDa, and the arrowheads on the right indicate the predicted migration positions of GerD-FLAG monomers (M), dimers (D), and trimers (T).
|
Solubilization of GerD-FLAG from the spore's inner membrane. To further characterize the location of GerD-FLAG in the spore, the effects of both Triton X-100 and high salt on GerD-FLAG in the P100 fraction and the insoluble fraction from the total extract of spores of strain PP19 (gerD amyE::PsspB-gerD-flag) were assessed (Fig. 3). Treatment of the P100 fraction with Triton X-100 moved the majority of GerD-FLAG into the S100 fraction (Fig. 3, lanes 3 and 4). Treatment of the initial insoluble fraction with Triton X-100 also moved the great majority of the GerD-FLAG into the S100 fraction (Fig. 3, lanes 5 and 6). Treatment of the initial P100 fraction with 0.5 M NaCl also moved the GerD-FLAG into the S100 fraction (Fig. 3, lanes 7 and 8), as did treatment of the initial insoluble fraction with 0.5 M NaCl, although at least some of the GerD-FLAG dimer remained insoluble (Fig. 3, lanes 9 and 10).
![]() View larger version (16K): [in a new window] |
FIG. 3. Solubilization of GerD-FLAG from insoluble and P100 fractions. Spores of strain PP19 (gerD amyE::PsspB-gerD-flag) were disrupted, extracted, and fractionated, and fractions were treated with either 1% Triton X-100 or 0.5 M NaCl as described in Materials and Methods. Aliquots of fractions from equal amounts of spores were run by SDS-PAGE, proteins were transferred to a PVDF membrane, and GerD-FLAG was detected with anti-FLAG antibody. Samples run in the various lanes were as follows: 1, initial S100; 2, initial P100; 3, S100 from initial P100 plus Triton X-100; 4, P100 from initial P100 plus Triton X-100; 5, S100 from initial insoluble fraction plus Triton X-100; 6, P100 from initial insoluble fraction plus Triton X-100; 7, S100 from initial P100 plus NaCl; 8, P100 from initial P100 plus NaCl; 9, S100 from initial insoluble fraction plus NaCl; and 10, P100 from initial insoluble fraction plus NaCl. The numbered lines to the left of the figure denote the migration positions of molecular mass markers, in kDa, and the arrowheads to the right indicate the predicted migration positions of GerD-FLAG monomers (M), dimers (D), and trimers (T). Lanes 1 to 6 and 7 to 10 came from different gels.
|
GerD abundance in spores.
Previous work has shown that there are 24 to 40 molecules of the GerBA subunit of the GerB nutrient receptor per spore (23). If GerD does interact with the nutrient receptors, it would be helpful to also know the number of GerD molecules in spores. To estimate this number, the GerD-FLAG signals from different amounts of total extract from spores of strain PP17 (gerD amyE::gerD-flag) were compared to those from different amounts of a FLAG-BAP fusion protein (data not shown). This analysis indicated that there are
2,000 molecules of GerD per spore. We then compared the GerD-FLAG level in spores of strain PP19 (gerD amyE::PsspB-gerD-flag) to that in PP17 spores, and this comparison indicated that the level of GerD-FLAG overexpression from the sspB promoter is
20-fold, giving
40,000 molecules in each spore overexpressing GerD-FLAG.
Processing of GerD in lgt mutant B. subtilis spores.
As noted above, B. subtilis GerD contains the signal sequence and lipobox characteristic of bacterial lipoproteins, and mutation of the invariant cysteine to an alanine inactivates GerD (25). One way of further characterizing a bacterial lipoprotein is by the addition of the antibiotic globomycin, which inhibits Lsp, thus preventing signal peptide processing. However, it is not clear that globomycin would enter the developing spore and inhibit Lsp during B. subtilis sporulation. Therefore, we chose to analyze GerD in spores of a strain with a deletion of the lgt (gerF) gene. Since lgt encodes the only prelipoprotein diacylglycerol transferase of B. subtilis, the diacylglycerylation of GerD will not take place in an lgt strain. Consequently, signal peptidase cleavage of the unmodified protein will not take place, and this should result in a GerD-FLAG protein that is
2 kDa larger than the fully processed protein. Indeed, GerD-FLAG in extracts from lgt spores was
2 kDa larger than GerD-FLAG from spores that contained Lgt (Fig. 4). However, with spores of strains that contained Lgt, even overexpressed GerD-FLAG ran at the lower molecular weights of the processed monomer, dimer, and trimer, as did GerD-FLAG from germinated spores with overexpressed GerD-FLAG (Fig. 4, lanes 3 and 4). This indicates that during sporulation, Lgt and Lsp are able to fully process even overexpressed GerD-FLAG. It was notable, however, that with lgt spores only overexpressed but unprocessed GerD-FLAG was detected, as the lower level of GerD-FLAG expressed from the gerD promoter was not detected in lgt spores (data not shown). However, whether the absence of GerD-FLAG from the latter spores was due to GerD-FLAG degradation or simply the removal of the FLAG tag is not clear. Analysis of the germination of spores that lacked Lgt with either wild-type or overexpressed levels of GerD-FLAG indicated that these spores did not germinate with L-alanine, although they did germinate slowly with AGFK (Table 2; see Discussion).
![]() View larger version (22K): [in a new window] |
FIG. 4. Processing of GerD-FLAG in spores that lack Lgt. Spores of strains PP23 (gerD lgt amyE::PsspB-gerD-flag), PP17 (gerD amyE::gerD-flag), and PP19 (gerD amyE::PsspB-gerD-flag) were disrupted, and total extracts were prepared as described in Materials and Methods. Spores of strain PP19 were also germinated for 45 min, harvested, purified, lyophilized, disrupted, and extracted as described in Materials and Methods. Aliquots of extracts from equal amounts of spores (except for PP17 samples, where twice as much was run) were run by SDS-PAGE, proteins were transferred to a PVDF membrane, and GerD-FLAG was detected with anti-FLAG antibody. Samples of total extract run in the various lanes were from spores of strains PP23 (dormant) (1), PP17 (dormant) (2), PP19 (germinated) (3), and PP19 (dormant) (4). The numbered lines to the left of the figure denote the migration positions of molecular mass markers, in kDa, and the arrowheads to the right indicate the predicted migration positions of both processed (P) and unprocessed (U) GerD-FLAG monomers (M), dimers (D), and trimers (T). Note that lanes 1 and 2 and lanes 3 and 4 are from different gels and that although extract from twice the amount of spores from strain PP17 was run in this experiment, the bands from the strains appear to exhibit approximately the same intensity. However, in this experiment, the amount of extract analyzed was very high, probably saturating the assay. Also note the gel artifact in lane 3 at the monomer weight (the band curves up slightly).
|
![]() View larger version (15K): [in a new window] |
FIG. 5. Localization of GerD in germinated spores. Spores of strain PP19 (gerD amyE::PsspB-gerD-flag) were germinated in LB medium plus 10 mM L-alanine for 45 min, and germinated spores were purified as described in Materials and Methods. The germinated spores were lyophilized, disrupted, extracted, and fractionated as described in Materials and Methods. Aliquots of fractions from equal amounts of spores were run by SDS-PAGE, proteins were transferred to a PVDF membrane, and GerD-FLAG was detected with anti-FLAG antibody. Samples run in the various lanes were as follows: 1, total extract; 2, insoluble fraction; 3, soluble fraction; 4, S100; and 5, P100. The numbered lines to the left of the figure denote the migration positions of molecular mass markers, in kDa, and the arrowheads to the right indicate the predicted migration positions of GerD-FLAG monomers (M), dimers (D), and trimers (T).
|
![]() View larger version (13K): [in a new window] |
FIG. 6. Fate of GerD-FLAG following spore germination. Spores of strain PP19 (gerD amyE::PsspB-gerD-flag) were incubated in LB medium plus 10 mM L-alanine for 0 (lane 1), 0.75 (lane 2), 1 (lane 3), 2 (lane 4), 2.5 (lane 5), and 3 h (lane 6), and any dormant spores were removed as described in Materials and Methods. The purified germinated spores and/or cells were lyophilized, disrupted, and extracted, aliquots of total extracts from equal amounts of starting dormant spores were run by SDS-PAGE, proteins were transferred to a PVDF membrane, and GerD-FLAG was detected with anti-FLAG antibody. The numbered lines to the left of the figure present the migration positions of molecular mass markers, in kDa, and the arrowheads to the right indicate the predicted migration positions of GerD-FLAG dimers (D) and trimers (T).
|
|
|
|---|
20-kDa protein containing a likely signal sequence, a lipobox, and an invariant cysteine to which lipid is probably added. These features, together with the knowledge that gerD transcription (10) is under the control of
G, a forespore-specific sigma factor, suggest that GerD is located in the spore's inner membrane. Indeed, GerD-FLAG was associated with the dormant spore's inner membrane. The solubilization of GerD-FLAG from the inner membrane by Triton X-100 suggests that GerD is indeed a lipoprotein. The solubilization by high salt further suggests that GerD is not an integral membrane protein, consistent with the relatively hydrophilic character of GerD, except for its signal peptide region (38).
The analysis of GerD processing in wild-type and lgt spores further strengthens the argument that GerD is a lipoprotein. B. subtilis contains only one prelipoprotein diacylglycerol transferase, Lgt, and thus when Lgt is not present, diacylglycerol cannot be added to GerD's Cys20 and Lsp will not cleave the protein just prior to this modified cysteine. The unprocessed lipoprotein will be
2 kDa larger than the processed form, as observed for overexpressed GerD-FLAG in lgt spores. Interestingly, when GerD-FLAG was expressed at wild-type levels in lgt spores, the protein was not detected and spores exhibited a germination phenotype similar to that of spores of a gerD deletion mutant, suggesting that this lgt phenotype may be due to the absence of GerD for some reason, as opposed to the lack of Lgt. However, spores of strain PP23 (gerD lgt amyE::PsspB::gerD-flag), in which GerD is overexpressed and readily detected, had a germination phenotype with both L-alanine and AGFK that was similar to that of lgt spores in which L-alanine germination is almost eliminated and the rate of AGFK germination is decreased 5- to 10-fold (8). It is difficult, however, to determine definitively whether the germination phenotype of lgt spores containing high levels of GerD-FLAG is due to the lack of diacylglycerylation of this protein or of the C protein components of the nutrient receptors, since the latter are also almost certainly lipoproteins (8). Indeed, replacement of the likely diacylglycerylated cysteine residue in the C proteins of the nutrient receptors with alanine reduces the rate of spore germination with L-alanine
98%, although it reduces the rate of AGFK germination only 5- to 10-fold (8). Consequently, the low but significant rate of AGFK germination of lgt spores with GerD-FLAG suggests that unprocessed GerD-FLAG may retain some function, since the rate of AGFK germination is reduced >95% by a gerD deletion mutation (25). However, the differences seen in rates of germination with AGFK in these experiments are relatively small.
While GerD does appear to be a lipoprotein located in the spore's inner membrane, this location appears to change upon spore germination, as most GerD appeared to be released from the inner membrane and then probably degraded. It is unclear whether release from the inner membrane is due to lipid cleavage or cleavage of the protein after the diacylglycerylated cysteine moiety. The migration positions in SDS-PAGE gels appeared to be essentially identical for GerD-FLAG in both the S100 and P100 fractions of dormant and germinated spores. However, removal of the diacylglycerol moiety alone or even with the modified cysteine residue would have only a minimal effect on the protein's molecular weight, and there might also be anomalous migration of these protein forms due to the diacylglycerol moiety. Lipoprotein release from membranes is not unheard of for gram-positive organisms (21, 22, 24, 26). Indeed, β-lactamase III of Bacillus cereus 569 exists in both membrane-bound and secreted forms (22). The membrane-bound form is a glyceride-cysteine lipoprotein, whereas the secreted form arises from the cleavage of the lipoprotein on the carboxyl side of the cysteine (22). Several other lipoproteins are also released from membranes, some in forms that retain the lipid modification, and these may well be functional (24, 26). It is, however, formally possible that the GerD-FLAG is actually not released from the inner membrane upon spore germination but that the germinated spore's inner membrane itself is more readily fragmented into such small pieces that they pellet poorly in the high-speed centrifugation step used to isolate the inner membrane. However, this was not the case when the location of the GerBA protein, a likely integral inner membrane protein, was determined in B. subtilis spores, as this protein remained in the inner membrane fraction in extracts from germinated spores (23). It is also possible that the reason for GerD-FLAG release from the inner membrane upon spore germination is that GerD is tightly associated with some other inner membrane protein, and it is this other protein that is released upon spore germination and brings GerD with it. However, neither the identity nor even the existence of any protein interacting with GerD has been established.
Spores lacking GerD are blocked prior to Ca2+-dipicolinic acid release during germination, a very early event in this process, suggesting that GerD is needed only early in germination. The release of GerD from the spore's inner membrane early in germination, coupled with the degradation of GerD during spore outgrowth and subsequent vegetative growth, suggests that GerD release from the inner membrane could be a mechanism to either shut off GerD function or effect removal of a protein that is no longer needed. However, we do not know if the degradation of GerD that may be occurring following spore germination is specific. It is also interesting that during spore germination no smaller processed forms of GerD were observed. This may be because any initial GerD cleavage is rate limiting in GerD degradation or because the FLAG sequence itself is being removed.
The fact that we found higher-molecular-weight forms of GerD on Western blots from SDS-PAGE gels run under reducing conditions suggests that GerD may function as a multimer, although the relevance of multimerization to GerD function is unknown, since we do not yet know precisely what GerD does. Interestingly, throughout our work we did not always see GerD-FLAG monomers, dimers, and trimers. Sometimes we saw monomers and dimers, and sometimes we saw dimers and trimers. Possible reasons for those differences, such as various amounts of GerD-FLAG present in extracts or slight differences in preparation of samples for SDS-PAGE, have not been investigated in detail but may be worth further study.
Our work has shown that there are
2,000 molecules of GerD per spore, compared to only 24 to 40 molecules of the GerBA subunit of the GerB receptor (23). However, another group of molecules involved in germination, the SpoVA proteins that may be involved in Ca-dipicolinic acid release, are present at
10,000 molecules per spore (37). One possible model for flow of information in spore germination is that GerD amplifies a signal received from the germinant receptors and then sends this amplified signal to downstream components of the germination pathways, such as SpoVA proteins. If this is indeed the case, then it would be appropriate for these different components to be present in increasing amounts to facilitate signal amplification. The major goal now is to determine how communication occurs between these germination components. Is communication direct or indirect, and how might GerD function, whatever that is, be regulated? These are certainly major challenges for future work.
Published ahead of print on 13 June 2008. ![]()
|
|
|---|
This article has been cited by other articles:
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Copyright © 2009 by the American Society for Microbiology. For an alternate route to Journals.ASM.org, visit: http://intl-journals.asm.org | More Info»