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Journal of Bacteriology, September 2008, p. 6204-6216, Vol. 190, No. 18
0021-9193/08/$08.00+0 doi:10.1128/JB.00467-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Department of Microbiology, University of Chicago, Chicago, Illinois 60637
Received 5 April 2008/ Accepted 20 June 2008
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2-15-GST, lacking this secretion signal, imposed a partial blockade. YscP-GST copurified with the type III ATPase complex (YscN, YscL, and YscQ) and with YscO, suggesting that the association of specific machine components with the impassable substrate may cause the block in type III secretion. |
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Each T3SS apparatus is thought to undergo a defined set of developmental steps as it matures into a functional needle complex (19, 24, 75). How bacteria coordinate the assembly of this apparatus with the ordered secretion of different classes of substrates remains a mystery. Do the secretion signals of individual substrates define the developmental stage at which they are recognized and secreted by the machine? In order to study the secretion signals of proteins that travel the type III pathway, translational fusions of secreted substrates to impassable reporter proteins were constructed (77). These impassable reporters include glutathione S-transferase (GST) and dihydrofolate reductase (DHFR), as well as ubiquitin (Ub) (46, 76). The best-characterized impassable substrates of the Yersinia T3SS are YopE and YopR. YopE, a late effector protein, travels the pathway at its final stage and is destined for injection into host cells (20, 70, 80). Injection requires SycE, a specific chaperone that binds to residues 15 to 100 of YopE and dissociates from the substrate before it leaves the bacterial cell (17, 20, 43, 79, 84, 87). YopE-DHFR, when expressed in wild-type yersiniae, does not block the machine and is also rejected from the type III secretion (TTS) pathway (77, 78). YopE-DHFR also represses the synthesis of other secretion substrates (77). The type III rejection phenotype of YopE-DHFR holds true for hybrids with other effectors, including YopQ and YopH (77, 78). YopR, an early substrate, is secreted into extracellular media prior to completion of the type III conduit and presumably does not require a chaperone for its secretion (3, 45). In contrast to YopE, YopR hybrids with impassable substrates block type III machines; however, this occurs only during early stages of development, when the T3SS conduit has not yet been completed (76). From this and other information on the positions of secreted products along the T3SS, one can infer that the selection of substrates by the type III machine must be ordered.
Here, we sought to use translational fusions of substrates with both passable and impassable reporter proteins to investigate the mechanisms whereby type III machines select their substrates. A unique curiosity of type III secretion is that hybrids formed between middle or late substrates and an impassable hybrid are rejected and cannot block the secretion machine. Nevertheless, fusions with two early substrates, YopR and YscP, cause a block of T3SS. Understanding the molecular attributes of these events may provide insight into the mechanisms of substrate recognition.
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(yscM1 yscM2) (16) were propagated in tryptic soy broth (TSB) or agar, brain heart infusion (BHI) broth, or M9-Casamino Acids minimal medium as indicated. Escherichia coli was grown in Luria broth or agar at 37°C. Antibiotics were added to a final concentration of 35 µg/ml of chloramphenicol or 50 µg/ml of kanamycin where appropriate for plasmid retention. Yersinia pestis KIM D27 (14), a KIM5 (nonpigmented) variant of Y. pestis biovar medievalis KIM lacking the 102-kb pgm locus (29), was grown in heart infusion broth or agar (HIA) at 26°C. The media were supplemented with 20 mM MgCl2 and 20 mM oxalic acid (HIA/MgOx) for low-calcium conditions and 35 µg/ml chloramphenicol for plasmid maintenance. Standard methods for transformation of plasmids into E. coli, Y. pestis, and Y. enterocolitica were employed. Plasmid construction. Construction of yopR-gst (pJS116) and pgst have been previously reported (69, 76). To construct the remaining glutathione-S transferase fusion proteins, we followed a common strategy. yscF and yscP were amplified from the Y. enterocolitica pYVe227 virulence plasmid via PCR using Go-Taq DNA polymerase. The following primers were used: 5'YscF-NdeI (5'-AACATATGATGAGTAATTTCTCTGGGTTTACAAAAGG-3') and 3'YscF-BglII (5'-AAAGATCTTGGGAACTTCTGTAGGATGCCTTGC-3'), and 5'YscP-NdeI (5'-AACATATGAATAAAATCACCACTCGTTCCCCATTAG-3') and 3'YscP-BglII (5'-AAAGATCTTTCTTCAGCCTCCCACTCCTCATAG-3'). The PCR products were cloned into pCR2.1 (Invitrogen), digested with NdeI and BglII, and ligated into pJS116 (a moderate-copy-number pBBR1MCS-2 plasmid derivative containing a C-terminal GST fusion protein) (76) cut with NdeI and BglII to yield pJS169 and pJS170, respectively.
The GST gene (gst) was amplified from pGEX-2TK with Go-Taq DNA polymerase using primers KpnI GST F (5'-AAGGTACCTCCCCTATACTAGGTTATTGGAA-3') and BglII GST R (5'-AAAGATCTTCAGTCACGATGAATTCCCG-3'). gst was cloned into pCR2.1 and digested with KpnI and BglII. pDA41 (a low-copy-number pHSG576/pSC101 derivative modified to contain the Ptac promoter driving expression of yopE-npt) was digested with KpnI and BamHI (4, 81). gst was ligated into digested pDA41 to yield pKER127 (yopE-gst). yopD, lcrV, and yopN were PCR amplified from the Y. enterocolitica pYV227 virulence plasmid using Go-Taq DNA polymerase. The following primers were used: NdeI-YopD F (5'-AACATATGACAATAAATATCAAGACAGACAGC-3'), KpnI YopD R (5'-AAGGTACCGACAACACCAAAAGCGGCTTTCAT-3'), NdeI-LcrV F (5'-AACATATGATTAGAGCCTACGAACAAAACCCA-3'), KpnI LcrV R (5'-AAGGTACCCCTCGTGTCATCTAGCAGACGTTGCAT-3'), NdeI-YopN F (5'AAAACATATGACGACGCTTCATAACCTATC-3'), and KpnI YopN FL R (5'-AAGGTACCGAAAGGTCGTAAGCCATTAGTTAT-3'). The PCR products were cloned into pCR2.1 (Invitrogen), digested with NdeI and KpnI, and ligated into pKER127 previously digested with NdeI and KpnI to yield pKER131 (yopD-gst), pKER132 (yopN-gst), and pKER133 (lcrV-gst), respectively.
For the construction of pyscP, YscP was amplified from the Y. enterocolitica pYVe227 virulence plasmid via PCR using Go-Taq DNA polymerase. The following primers were used: 5'YscPext-NdeI (5'-AACATATGTTTCTACAGCATCACAGGAACG-3') and 3'YscPext-BamHI (5'-AAGGATCCGTTCCAACAGCGCAAGTTGCA-3'). The PCR products were cloned into pCR2.1 (Invitrogen), digested with NdeI and BamHI, and ligated into pDA37 previously digested with NdeI and BamHI to yield pKER76 (pyscP).
For the construction of Ub fusion proteins, the Ub gene and its variant Ub3,13 gene (carrying two mutations that replace Ub isoleucine codons 3 and 13 with glycine) were amplified using the following primers: 5'Ub-BglII (5'-GGAAGATCTATGCAGATTTTCGTCAAGACTTTG-3'), 3'Ub-XbaI (5'-CTAGTCTAGATTAACCACCTCTTAGCCTTAGCACAAG-3'), and 5'Ub3,13-BglII (5'-GGAAGATCTATGCAGGGTTTCGTCAAGACTTTGACCGGTAAAACCGG AACATTG-3'). The PCR products were cloned into pCR2.1, digested with BglII and XbaI, and ligated into pJS170 previously digested with BglII and XbaI to generate pJS200 and pJS201 expressing yscP-Ub gene and yscP-Ub3,13 gene, respectively.
For construction of the C-terminal yscP truncations (1-300, 1-200, 1-100, and 1-25) fused to gst, yscP fragments were PCR amplified with Pfu polymerase and cloned into pCR2.1. The recombinant plasmid was digested with NdeI and BglII and ligated into pJS116 digested with the same enzymes to yield pJS182 (yscP1-300-gst), pJS183 (yscP1-200-gst), pJS184 (yscP1-100-gst), and pJS186 (yscP1-25-gst). The low-copy-number plasmid pDA44 (81) was digested with NdeI and KpnI. The minimal secretion signals of yscP and its variants were generated by annealed oligonucleotide cloning and ligated into the NdeI/KpnI site to generate neomycin phosphotransferase (npt) fusions.
For construction of the N-terminal yscP truncations (
2-15,
2-50,
2-100, and
2-150), yscP fragments were PCR amplified with Pfu polymerase and cloned into pCR2.1. The recombinant plasmid was digested with NdeI and KpnI and ligated into pKER127 digested with the same enzymes to yield pKER147 (yscP
2-15-gst), pKER148 (yscP
2-50-gst), pKER152 (yscP
2-100-gst), and pKER151 (yscP
2-150-gst).
For the construction of 3' npt fusions, full-length, 1-300, 1-200, 1-100, and
2-15 yscP fragments were PCR amplified with Pfu polymerase and cloned into pCR2.1. The recombinant plasmids were digested with NdeI and KpnI and ligated into pDA41 previously digested with the same enzymes to yield plasmids pKER156 (yscP-npt), pKER161 (yscP1-300-npt), pKER162 (yscP1-200-npt), pKER163 (yscP1-100-npt), and pKER155 (yscP
2-15-npt). All sequences were verified by the University of Chicago Cancer Research Center DNA-sequencing facility. Table 1 lists additional primers used in this study.
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TABLE 1. Primers used in this study
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Hydroxylamine mutagenesis of yscP-gst and LCR phenotypes. Plasmid pJS170 containing the yscP gene under the control of the isopropyl-β-D-thiogalactopyranoside (IPTG)-inducible Ptac promoter was subjected to hydroxylamine mutagenesis. A fresh 1 M NH2OH solution of hydroxylamine at pH 6.0 was mixed in a 1:1 (vol/vol) ratio with newly isolated pJS170. The solution was incubated at 68°C for 2 h, after which DNA was isolated using QIAquick PCR purification (Qiagen). Ten microliters of hydroxylamine-treated pJS170 was electroporated into Y. pestis KIM D27 that had been diluted 1:20 into 20 ml of heart infusion broth and grown for 3 h at 26°C. Transformants were recovered at 26°C for 2 h and plated on HIA containing 35 µg/ml kanamycin for plasmid selection. Colony material was patched on HIA/MgOx plates containing 35 µg/ml of kanamycin and 1 mM IPTG and grown at 26°C and 37°C. Colonies that no longer grew at 37°C (phenotype, low calcium response positive [LCR+]) were selected. The yscP gene was amplified using primers 5'YscP F NdeI (5'-AAACATATGAATAAAATCACCACTCGTTCCCCA-3') and 3' YscP fl R KpnI (5'-AAAGGTACCTTCTTCAGCCTCCCACTCCTCATAGAC-3') and sequenced with the above-mentioned primers and internal primers YscP screen 1 (5'-TTTGTACGGAAAACGAGCAGATTTTTCTGCTAC-3') and YscP screen 2 (5'-GCTCTTCATCAAAAAGCATTGCCAGAGATATGT-3'). The PCR products were sequenced at the University of Chicago Cancer Research Center DNA-sequencing facility, and mutations were confirmed by comparison with the native yscP sequence.
Type III secretion. Yersinia strains were grown overnight in TSB containing 35 µg/ml of either kanamycin or chloramphenicol. The cultures were diluted 50-fold into fresh BHI supplemented with antibiotic, 20 mM oxalic acid, and 20 mM MgCl2 or M9 minimal medium and grown for 2 h at 26°C. The cultures were shifted to 37°C for 3 h to induce type III secretion. Where indicated, IPTG was added to induce the expression of hybrid fusion proteins. Samples were fractionated and analyzed for type III secretion.
Digitonin fractionation of Yersinia-infected HeLa cells.
HeLa cells were grown in Dulbecco's modified Eagle medium supplemented with 10% fetal bovine serum and 2 mM glutamine at 37°C in 5% CO2. Two hours prior to infection, overnight Yersinia cultures were diluted 1:50 into fresh TSB containing 35 µg/ml kanamycin. Ten minutes prior to infection, 1 mM IPTG was added to induce expression of the indicated genes. One hour prior to infection, 90% confluent HeLa cells were washed two times with phosphate-buffered saline (PBS), and 10 ml of Optimem medium and 1 mM IPTG were added. HeLa cells were infected with the indicated Yersinia strains at a multiplicity of infection (MOI) of 10. Three hours after infection, the tissue culture medium was decanted and centrifuged at 15,000 rpm for 15 min. Proteins in 7 ml of supernatant were precipitated with methanol/chloroform, and the rest of the supernatant was discarded. The pellets were suspended in 10 ml of 1% SDS in PBS, and 7 ml of the pellet fraction was precipitated with methanol/chloroform. Digitonin (1%) in PBS was added to the tissue cultures cells and their attached bacteria for 20 min at room temperature to disrupt HeLa cell plasma membranes. Following HeLa cell disruption, the cell remnants were detached from the flasks using a cell scraper, the digitonin lysates were centrifuged, and proteins in the supernatant and pellet were processed as described above. Samples were separated on 15% SDS-PAGE gels, transferred to polyvinylidene difluoride (PVDF) membranes, and immunoblotted using specific polyclonal antisera to YopR, YopE, YopH, YopN, YopB, YopD, LcrV, I
B, and RpoA.
Cytotoxicity assay. HeLa cell tissue cultures (3 x 105 cells) were grown in 12-well tissue culture plates and infected as described above. After 3 hours of infection, the medium was removed and the cells were fixed for 20 min in a solution of 3.7% formaldehyde in PBS. Fixation was quenched with 0.1 M glycine in PBS. The cells were permeabilized with 0.1% Triton X-100 in PBS for 30 min at 4°C. The cells were washed and blocked for 15 min with PBS containing 0.05% Tween 20 and 5% skim milk. Actin filaments were labeled with 99 nM (3 U) of rhodamine-phalloidin (Flexa) for 20 min at room temperature. The labeling solution was removed, and each well was washed with PBS. The cells were visualized with a Nikon TE2000-U inverted microscope. Rhodamine visualization was achieved through excitation at 591 nm and emission at 608 nm. Images were captured with a Cascade 1K charge-coupled device camera.
Protein electrophoresis and immunodetection. Proteins were separated by electrophoresis on 15% SDS-PAGE where indicated. For immunoblots, proteins were transferred to PVDF membranes (Millipore) and probed with antisera as described previously (17).
Protein purification.
For purification of YscP-GST, YscP
2-15-GST, and YscP1-100-GST, Y. enterocolitica W22703 containing pJS170, pKER147, and pJS184 were grown overnight in TSB medium containing 35 µg/ml kanamycin and 35 µg/ml chloramphenicol. The overnight cultures were diluted 20-fold into 1 liter of M9 minimal medium containing 35 µg/ml kanamycin/chloramphenicol and grown at 26°C for 3 h (optical density at 600 nm, 0.6). Upon shift to 37°C for 3 h, 1 mM IPTG was added to induce the expression of hybrid proteins. The cultures were harvested by centrifugation at 7,000 x g for 10 min, and the bacterial pellet was suspended in 20 ml of PBS. Samples were passed through a French pressure cell at 16,000 lb/in2 twice, and the lysate was clarified by ultracentrifugation at 100,000 x g for 30 min. The clarified lysate was loaded onto a 1-ml glutathione-Sepharose column (GE Healthcare) preequilibrated with PBS. The column was then washed with 10 column volumes of PBS, and the bound proteins were eluted with 20 mM glutathione, pH 8.0, in PBS.
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(yscM1 yscM2) in Y. enterocolitica strain EC2 (15, 77). IPTG-induced expression of substrate gene fusions with gst revealed that yscP-gst and yopR-gst, but not yopD-gst, yopN-gst, or yopE-gst, caused a blockade in type III secretion (Fig. 1B). Thus, GST hybrids with the needle shaft protein, YscF; the needle tip protein, LcrV; or the translocator, YopD, or with substrates that travel into the cytosol of host cells, YopE and YopN, can be rejected by the secretion machine. As a result, these polypeptides fail to jam the type III pathway (Fig. 1C). In contrast, YscP-GST, similarly to YopR-GST, causes a complete blockade that cannot be relieved even by class II mutations, preventing feedback inhibition of gene expression in the type III pathway (Fig. 1C).
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FIG. 1. YscP-GST and YopR-GST block the Yersinia T3SS. (A) Wild-type Y. enterocolitica W22703 expressing yscF-gst, yscP-gst, yopR-gst, yopD-gst, lcrV-gst, yopN-gst, and yopE-gst was induced for type III secretion by the chelation of calcium. The cultures were grown in the absence (–) and presence (+) of the inducer IPTG, and following centrifugation of culture aliquots, Yop proteins in the supernatant were separated by 12% SDS-PAGE and visualized by Coomassie blue staining. (Bottom) Proteins in the bacterial sediment (plus IPTG) were electrotransferred to PVDF membranes and immunoblotted with antisera to GST. (B) Y. enterocolitica strain EC2 [ (yscM1 yscM2)] expressing yscP-gst, yopR-gst, yopD-gst, yopN-gst, and yopE-gst was induced for type III secretion, and Yop proteins in the culture supernatant were detected by SDS-PAGE and Coomassie blue staining. Molecular mass markers (kilodaltons) are indicated to the left of the gel, while secreted Yop effectors are indicated to the right. (C) Illustration of a model in which YscP-GST and YopR-GST, but not YscF-, YopD-, LcrV-, YopN-, and YopE-GST, block the type III secretion machine.
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FIG. 2. Expression of yscP-gst blocks needle formation in wild-type Y. enterocolitica. (A) Wild-type (WT) Y. enterocolitica expressing gst, yscP-gst, and yopR-gst was grown in the absence (–) and presence (+) of the inducer IPTG, and following centrifugation of culture aliquots, proteins in the supernatant (S) and pellet (P) were separated by SDS-PAGE, transferred to PVDF membranes, and probed with antisera to YscF, LcrV, YopE, and chloramphenicol acetyltransferase (CAT) or NPT. (B) Needles were purified from the cultures in panel A, and the purified needle preparations were separated by SDS-PAGE, transferred to PVDF membranes, and probed with antisera to YscF and LcrV. (C) Purified needle preparations from the strains in panel A were immobilized on carbon-coated copper grids. Samples were negatively stained with 2% uranyl acetate and viewed by transmission electron microscopy. The bars indicate a distance of 10 nm.
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FIG. 3. Expression of yscP-Ub gene, but not yscP-Ub3,13 gene, blocks Yersinia type III secretion. (A) Y. enterocolitica expression of YscP-Ub and YscP-Ub3,13 was induced with 1 mM IPTG, and type III secretion was activated with sodium oxalate. Following centrifugation of culture aliquots, proteins in the supernatant (S) and pellet (P) were separated by SDS-PAGE, transferred to PVDF membranes, and probed with antisera to Ub, YopD, YopE, and Npt. WT, wild type. (B) Y. enterocolitica W22703 containing pJS200 or pJS201 was used to infect HeLa tissue culture cells at an MOI of 10. IPTG was added to the medium to induce expression of yscP-Ub gene and yscP-Ub3,13 gene. The infection medium (M) was removed and centrifuged, separating the supernatant (S) and pellet (P). Digitonin was added to tissue culture cells with adherent bacteria. Digitonin-extracted samples (D) were centrifuged, separating the supernatant and pellet. All samples were precipitated with methanol/chloroform. Proteins were separated by SDS-PAGE and immunoblotted with polyclonal antisera specific for YopR, YopE, YopH, YopN, I B, and RpoA. (C) HeLa tissue culture cells were infected at an MOI of 10 with Y. enterocolitica W22703 containing pJS200 or pJS201. The cytotoxicity of Y. enterocolitica-infected HeLa cells was visualized by staining F-actin with rhodamine-conjugated phalloidin. Wild-type-infected, yscU mutant-infected (TTS–), and uninfected HeLa cells are shown as controls.
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yscP sequences required for a type III secretion blockade. To characterize the yscP sequences required for the YscP-GST blockade, Y. enterocolitica expressing stepwise 3' truncations of yscP fused to gst (yscP1-515-gst, yscP1-300-gst, yscP1-200-gst, yscP1-100-gst, and yscP1-25-gst) (Fig. 4A) were induced with IPTG, and type III secretion was measured by immunoblotting. Strains expressing yscP1-515-gst (full-length yscP), yscP1-300-gst, or yscP1-200-gst blocked all type III secretion; however, 3' yscP truncations beyond the first 200 codons (yscP1-100 and yscP1-25) did not (Fig. 4B). The products of yscP1-200-gst and yscP1-100-gst accumulated with similar abundances, suggesting that the defect in the type III blockade is not caused by differences in gene expression (Fig. 4B). The type III secretion blockade imposed by expression of yscP1-515-gst, yscP1-300-gst, and yscP1-200-gst also included YscP, whereas yscP1-100-gst and yscP1-25-gst did not block YscP secretion (Fig. 4B). As a control, overexpression of yscP alone did not block type III secretion (Fig. 4B). Thus, 3' yscP sequences must harbor information that is necessary for the implementation of the YscP-GST-mediated type III blockade (Fig. 4B).
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FIG. 4. YscP sequences required for the type III secretion blockade. (A) Schematic diagram of the C-terminal truncations of YscP and subsequent fusion protein construction. (B) Wild-type Y. enterocolitica without plasmid (–) or expressing YscP1-515-GST, YscP1-300-GST, YscP1-200-GST, YscP1-100-GST, YscP1-25-GST, or YscP alone was induced for type III secretion. Following centrifugation of culture aliquots, proteins in the supernatant (S) and bacterial pellet (P) were separated by SDS-PAGE, transferred to a PVDF membrane, and immunoblotted with polyclonal antisera specific for YscP, YopR, YopD, LcrV, YopE, and Npt. YscP-GST fusions are denoted with black arrows, and native YscP is denoted by a white arrow.
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FIG. 5. Mapping the minimal secretion signal of YscP. (A) Wild-type Y. enterocolitica expressing YscP1-x-Npt fusion proteins, where x represents codons 15, 14, 13, 12, 11, 10, 9, 8, 7, and 6, were induced for type III secretion in M9 minimal medium containing 35 µg/ml of chloramphenicol. Following centrifugation of culture aliquots, proteins in the supernatant (S) and pellet (P) were separated by 15% SDS-PAGE, transferred to PVDF membranes, and probed with antisera to NPT, YopE, and chloramphenicol acetyltransferase (CAT). (B) The +1 frameshift secretion signal maintains 47 of 50 nucleotides while altering 12 of the first 15 amino acids of YscP. The "mut" frameshift alters 16 of a possible 42 nucleotides of the mRNA sequence of the first 15 codons of YscP while maintaining the native protein sequence. Red, altered nucleotides; blue, altered amino acids. wt, wild type. (C) Wild-type Y. enterocolitica containing pKER144 and pKER145 (+1 and mut minimal secretion signals) were induced for type III secretion, and proteins in the supernatant (S) and pellet (P) were probed with antisera to NPT, YopE, and CAT.
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2-15-gst caused a nearly complete block in type III secretion when analyzed with Coomassie brilliant blue (Fig. 6A and B). Immunoblotting revealed that the type III block of YscP
2-15-GST was, however, incomplete, as YopR, YopD, LcrV, and YopE continued to be secreted. Further 5' truncations, tested with yscP
2-50-gst, yscP
2-100-gst, and yscP
2-150-gst, were unable to block type III secretion of yersiniae for early (YscP and YopR), middle (YopD and LcrV), and late (YopE) substrates (Fig. 6B and C). From these observations, we surmise that initiation of YscP-GST into the type III secretion pathway is a prerequisite for the establishment of a complete secretion blockade. However, the data cannot exclude the possibility that YscP
2-15-GST retains another secretion signal element that imposes at least a partial engagement with the secretion machine, consistent with the report of Agrain and coworkers that YscP may harbor two secretion signals, one at its N terminus (5' end) and one positioned at residues 97 to 137 (2).
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FIG. 6. The N-terminal secretion signal is required for the YscP-GST-mediated type III secretion blockade. (A) Schematic diagram of the N-terminal truncations of YscP and subsequent fusion protein construction. (B) Wild-type Y. enterocolitica expressing YscP 2-15-GST, YscP 2-50-GST, YscP 2-100-GST, and YscP 2-150-GST were induced for type III secretion and grown in the absence (–) and presence (+) of IPTG. Following centrifugation of culture aliquots, proteins in the supernatant were separated by SDS-PAGE and visualized by Coomassie blue staining. Molecular mass markers (in kilodaltons) are indicated to the left of the gel, while secreted Yop effectors are indicated to the right. (C) Wild-type Y. enterocolitica expressing the hybrids in panel B was induced for type III secretion, and the cultures, following centrifugation, were separated into supernatant (S) and pellet (P) fractions. Proteins were separated on SDS-PAGE, transferred to PVDF membranes, and immunoblotted with polyclonal antisera specific for YscP, YopR, YopD, LcrV, YopE, and chloramphenicol acetyltransferase (CAT). YscP 2-x-GST fusion proteins are denoted with black arrows; the faster-migrating immunoreactive species represents wild-type YscP.
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FIG. 7. Hydroxylamine-generated mutations in yscP-gst that abrogate the type III secretion blockade. (A) Experimental flowchart for the generation of yscP-gst mutants that no longer block the Yersinia type III pathway. (B) Amino acid and corresponding DNA sequences of Y. enterocolitica W22703 yscP. All nonsense mutations obtained by hydroxylamine mutagenesis and screening for LCR phenotypes are shaded in red. Notably, missense mutations were not obtained. YscPFL, full-length YscP.
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FIG. 8. YscP-GST blocks all stages of the type III pathway. (A) Diagram displaying type III secretion machine assembly (green); secretion of the early substrates YscF, YopR, and YscP (blue); and secretion of late Yop effectors (red). (B) Wild-type Y. enterocolitica expressing YscP-GST was grown in BHI containing 20 mM MgCl2 and 20 mM sodium oxalate for 2 h at 26°C and shifted to 37°C for 2 h to induce type III secretion (T3 Pre-induction). After 2 hours, cultures in columns 2 and 3 (from left) were aliquoted, centrifuged, and suspended in fresh medium with or without IPTG (Renew Media) and incubated for an additional 2 h. Following centrifugation, all cultures were separated into supernatant (S) and pellet (P) fractions and separated on 15% SDS-PAGE. The proteins were transferred to a PVDF membrane and immunoblotted with polyclonal antisera to GST, YopR, YopD, YopE, and Npt. (C) Diagram displaying the effects of no induction of yscP-gst (no IPTG meant no blockade), delayed induction (IPTG added after 2 h at 37°C), and simultaneous induction (IPTG at the time of shift to 37°C). Percents secretion of YopR and YopE were calculated by the amount of signal in the supernatant (S) divided by the total signal in the supernatant and the pellet (S/S + P).
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2-15-GST (pKER147), or YscP1-100-GST (pJS184) was grown at 26°C to an optical density at 600 nm of 0.8. The cultures were induced with IPTG for 4 h at 37°C. Fusion proteins were purified using affinity chromatography over glutathione-Sepharose. Eluate fractions were analyzed by Coomassie blue staining and immunoblotting for the presence of the fusion protein (Fig. 9A, B, and C). In all cases, the fusion protein was enriched in the elution fraction. In addition to YscP-GST, YscN, the ATPase of type III machines (9, 86); YscL, its negative regulator (9); YscQ, the C-ring protein (38, 82); and YscO, another mobile machine component (62), were also enriched during affinity chromatography. The association of YscN, YscL, YscQ, and YscO with the blocking substrate appears to be specific, as control purifications with Yersinia expressing GST alone did not yield type III machine components (data not shown). YscP
2-15-GST, which imposes a partial blockade, also captured the YscN ATPase complex, including YscL and YscQ, as well as YscO. In contrast, YscN did not copurify with YscP1-100-GST, a hybrid that cannot block the type III pathway, although small amounts of YscL, YscQ, and YscO did copurify with the hybrid.
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FIG. 9. YscP-GST interacts with the type III machine components YscN, YscL, YscQ, and YscO. Wild-type Y. enterocolitica expressing pJS170 (yscP-gst) (A), pKER147 (yscP 2-15-gst) (B), and pJS184 (yscP1-100-gst) (C) was grown under conditions that induced the type III secretion machine and YscP-GST in the absence of extracellular calcium. YscP-GST, YscP 2-15-GST, and YscP1-100-GST were purified from these strains, and samples corresponding to the lysate (L) and eluate (E) were analyzed by Coomassie blue-stained SDS-PAGE (left column) or immunoblotting (right column), probing with antisera to machinery components (YscP, YscK, YscL, YscN, YscO, YscQ, and YopR/YscH), as well as the secreted effector YopE. The relative intensities of immunoreactive signals in the lysate and eluate fractions (E/L) is expressed as a ratio to the right of each blot. The positions of the molecular mass markers are indicated to the left of the gels (in kilodaltons). In panel A, the black arrowhead at 83 kDa points to the full-length fusion protein and the white arrowheads to the cleaved species YscP (57 kDa) and GST (26 kDa). In panel B, the black arrowhead at 83 kDa points to the full-length fusion protein and the white arrowhead to GST (26 kDa). In panel C, the black arrowhead at 37 kDa points to the full-length fusion protein and the white arrowhead to GST (26 kDa).
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(yscM1 yscM2) (16). The residue length of YscP was found to be essential for the blockade, as truncations up to the first 200, but not less than 200, residues were tolerated (76). In order to block secretion, yopR and yscP clearly require additional sequence information tethered to the gene that encodes the impassable reporter than is minimally required when fusions occur with a reporter gene that specifies a passable product, such as Npt. From this, we conclude that substrate initiation into the secretion machine via its 5' nucleotide sequence or N-terminal peptide can be revoked for all substrates examined; however, when additional sequences of yscP (or yopR) are added in cis, the engagement of impassable substrates with the type III machine is irrevocable (76). As in-frame deletions of 5' sequences, which encompass only the minimal secretion signal, abrogate the blocking attributes of yopR-gst and yscP-gst, we infer that substrate initiation into the T3SS pathway is absolutely required for jamming to occur (76). Immediate or delayed induction of yscP-gst, i.e., offering the impassable YscP-GST substrate to machines that develop synchronously or asynchronously, revealed that the nature of the YscP-GST blockade must differ from that of YopR-GST (76). YscP-GST appears to block machines at any stage of development, even in bacteria in which most type III needles are already engaged in the transport of late substrates, i.e., machines that flipped the switch toward secretion of later substrates. This unique phenotype suggests to us that YscP-GST may jam machine components that are required for the secretion of all substrates and at all developmental stages of the pathway. Affinity chromatography of YscP-GST hybrids that blocked machines led to copurification of YscN-YscL-YscO-YscQ, whereas a nonblocking substrate, YscP1-100-GST, captured only YscL-YscO-YscQ, but not YscN. Although this remains speculative, the collected data are consistent with a model in which an irrevocable engagement of impassable substrates with YscN AAA ATPase causes a blockade of the secretion pathway (9, 76).
The secretion signal of YscP has been extensively studied. Agrain and coworkers reported that, in the context of various YscP truncations fused to adenylate cyclase (Cya), the N-terminal 35 amino acids, as well as amino acids 97 to 137, functioned as two independent secretion signals of YscP (2). InvJ, the Salmonella homolog of YscP, also possesses an N-terminal secretion signal within the first seven codons that could tolerate changes in both amino acid and mRNA sequences (72). The possibility of a second secretion signal for InvJ has not yet been investigated. Here, we report that the first 10 codons of YscP function as a minimal secretion signal for passable reporter fusions and that the N-terminal secretion signal, codons 2 to 15, is also required for the type III blockade of YscP-GST. Significant changes in both the amino acid and mRNA sequences did not abolish the secretion signal function of the first 15 codons of yscP. Thus, similar to invJ and other type III secretion signals, an unequivocal distinction between protein- and mRNA-encoded signaling functions could not be achieved for the yscP signal (12, 72). The presence of a second secretion signal in YscP suggests the interesting possibility that substrates that block the pathway when fused to an impassable reporter require a second independent secretion signal to jam the type III machine. It is likely that such a signal may be complex (residues 97 to 137), as random-mutagenesis experiments failed to identify discrete missense mutations that abrogated the ability of yscP-gst to block the type III pathway.
YscP fulfills multiple roles during the maturation of the needle apparatus. Similarly to its flagellar homolog, FliK, YscP regulates the length of the assembled filament, i.e., a needle that emerges on the bacterial surface (2, 40, 56, 58, 59). Deletions of yscP result in needles of unregulated length, whereas deletions or loss-of-function mutations in fliK produce polyhooks, aberrant structures in which multiple hooks are joined with the flagellar basal body (40, 85). The residue length of YscP corresponds to the length of the type III needle, which prompted Journet and coworkers to propose that YscP functions as a molecular ruler (40). Length regulation could occur if YscP interacted with the polymerized needle protein YscF. If so, mechanisms that would allow YscP to perceive needle assembly progression could subsequently relay such information to the T3SS apparatus in the cytoplasm. Needle length regulation has been proposed to conclude with the release of YscP into the extracellular medium (59, 63). Nevertheless, N-terminally truncated FliK, which cannot enter the flagellar type III pathway, continues to regulate hook length from inside bacterial cells (35, 56). This finding has been interpreted to mean that FliK secretion cannot be an absolute requirement for hook length regulation. Instead of a ruler, FliK has been suggested to act as a molecular clock that times a switch within secretion machines to recognize different substrates during the assembly of hook and filament subunits (58). Another model envisioned that FliK may function as a measuring cup, collecting quanta of substrate molecules that subsequently generate the corresponding increments in structural assembly (35, 48).
Once hook length has been established, FliK, and presumably also YscP, perform a second task, flipping the substrate specificity switch of the needle apparatus (1, 25, 28, 55, 58). The C-terminal domain of FliK, designated T3S4, interacts with the switch protein FlhB, which is positioned in the inner membrane at the base of the type III machine (28, 55, 85). Flipping the switch is associated with FlhB autocleavage at its C-terminal cytoplasmic domain, thenceforth causing the type III machine to recognize later substrates (27, 57). YscU also undergoes autocleavage; however, its C-terminal domain does not seem to interact with YscP (42, 69, 75). Thus, there may be subtle differences between the flagellar assembly pathway and Yersinia type III secretion in the molecular mechanisms that couple hook and needle lengths to switch protein cleavage or FliK/YscP interactions with other machine and substrate components.
This work was supported by a grant from the National Institute of Allergy and Infectious Diseases, Infectious Diseases Branch, AI42797 (to O.S.). K.E.R. is a trainee of the NIH Medical Scientist Training Program at The University of Chicago (GM07281). O.S. acknowledges membership in and support from the Region V "Great Lakes" Regional Center of Excellence in Biodefense and Emerging Infectious Diseases Consortium (GLRCE) (National Institute of Allergy and Infectious Diseases Award 1-U54-AI-057153).
Published ahead of print on 18 July 2008. ![]()
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