Previous Article | Next Article ![]()
Journal of Bacteriology, February 2008, p. 1184-1189, Vol. 190, No. 4
0021-9193/08/$08.00+0 doi:10.1128/JB.01517-07
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Institute for Infectious Diseases, University of Bern, Bern, Switzerland,1 University Hospital, Bern, Switzerland2
Received 20 September 2007/ Accepted 23 November 2007
|
|
|---|
|
|
|---|
S. pneumoniae shares with at least 40 bacterial species the property of natural transformation (19). The importance of transformation for genetic evolution has been illustrated by the emergence of penicillin-resistant pneumococcal isolates and pneumococcal strains undergoing capsule switch (8, 9, 22). In S. pneumoniae, competence is induced by the competence-stimulating peptide (CSP) (7). Induction of competence-specific (com) genes leads to DNA uptake and processing. Competence also triggers cell lysis and DNA release from a fraction of bacterial cells.
This study investigated whether the spxB gene or the products of SpxB have any influence on competence in S. pneumoniae. It is shown that in strain D39, deletion of spxB abolished spontaneous transformation, reduced expression levels of an early competence gene (comC) and a late competence gene (recA), and reduced competence-associated DNA release. There was, however, no evidence for a role of the products of SpxB, i.e., H2O2 and acetyl phosphate. The mechanisms connecting spxB gene with competence remain to be unraveled.
|
|
|---|
Bacteria were grown on Columbia sheep blood agar (CSBA) plates at 37°C in a 5% CO2-enriched atmosphere. Liquid culture was performed in brain heart infusion (BHI) broth, pH 7.4 to 7.5 (Becton Dickinson and Company, le Pont de Claix, France), containing 5% fetal calf serum (FCS) (Biochrom KG, Berlin, Germany) in a water bath at 37°C without shaking. Transformation experiments were performed either in BHI broth supplemented with 5% FCS or in TSB competence medium (pH 8) (27). Where stated, 100 ng/ml CSP-1 (NeoMPS S.A, Strasbourg, France), 0.1% sodium acetate (Merck, Darmstadt, Germany), or 5,000 U/ml catalase (Sigma-Aldrich, Buchs, Switzerland) was added to the BHI broth with 5% FCS. Bacteria were stored at –80°C using Protect bacterial preservers (TSC, Heywood, United Kingdom). Optical density at 600 nm (OD600) was measured using a Perkin-Elmer Lambda-2 spectrometer (Perkin-Elmer [Schweiz] AG, Schwerzenbach, Switzerland).
Construction of the D39 spxB mutant. Transformation of Escherichia coli and S. pneumoniae was performed as described previously (14, 20). A 1.3-kb fragment (spxB_S2_F, 5'-TAAATTCGGCGGCTCAATC-3'; spxB_S1_B, 5'-CAGCGTTTGTGAAGTCTACACC-3') of spxB was amplified and cloned into pGEM-T Easy Vector (Promega, Wallisellen, Switzerland). An erythromycin cassette (ermB) (5) was inserted at the HindIII restriction site of the amplified spxB fragment. Strain D39 Smr was transformed with the whole plasmid, and recombinants were selected on CSBA plates containing erythromycin (2 µg/ml). Knockout of spxB was confirmed by PCR and phenotypically by a 4-fold-decreased H2O2 release per cell and a 10-fold-decreased H2O2 concentration in the supernatant at an OD600 of 0.75 compared to the wild type (data not shown).
Assay for transformation frequency. Transformations were performed as described below with the following adaptations. Rifampin-susceptible strain D39 Smr or its spxB-deficient mutant were grown in BHI broth with 5% FCS to an OD600 of 0.05, 0.15, 0.25, 0.35, or 0.45 and transformed with a total of 1 µg DNA consisting of the rpoB rifampin resistance (Rifr) gene (20). Transformation was performed with or without addition of CSP-1; 100 µl of culture was spread on CSBA plates containing 0.5 µg/ml rifampin. Transformants were counted after 48 h. Total cell counts were obtained by plating serial dilutions of culture onto CSBA plates.
RNA isolation for reverse transcription-PCR (RT-PCR). Bacteria were prepared as previously described (15), transferred to a 1.5-ml tube containing 0.05 g of 100-µm acid-washed glass beads (Sigma-Aldrich, Buchs, Switzerland), and vibrated for 10 min at half-maximum speed using a Mickle vibratory tissue disintegrator (Mickle Laboratory Engineering, Gomshall, United Kingdom). The mixture was then centrifuged and RNA extracted from the supernatant using the Qiagen RNeasy minikit (Qiagen AG, Hombrechtikon, Switzerland) according to the manufacturer's instructions. The RNA recovered was treated with DNase I (Stratagene Europe, Amsterdam, Netherlands) according to the manufacturer's instructions to remove any contaminating DNA. RNA concentration and purity were determined by measuring absorbance at both 260 nm and 280 nm (Lambda-2 spectrometer; Perkin-Elmer [Schweiz], Schwerzenbach, Switzerland).
Quantitative gene expression using a cRNA standard curve. Quantitation of absolute mRNA copy numbers by real-time RT-PCR was performed by using a standard curve generated based on in vitro-transcribed RNA (cRNA) as previously described (12, 16). For the in vitro transcription of the spxB, comC, and recA genes, the following primers were used: spxB_F1_T7 (5'-TAATACGACTCACTATAGGGAGAGTGGAATAGTAAAAATTTGGAGAACG-3') and spxB_Bac1 (5'-CGATCTTTTAAAGTTCTGCTCTATG-3'), comC_Start1_T7 (5'-TAATACGACTCACTATAGGGAGAAATCTTTCTGTCAGTTTTGGTCG-3') and comC_End1 (5'-GTCCCAAATCCAAATAAATCCAT-3'), and recA_Start1_T7 (5'-TAATACGACTCACTATAGGGAGAGTACGTCACATTGCGGTTATGC-3') and recA_End1 (5'-GAATCAAAAATCGAAAAAGTAGCG-3') (the T7 promoter is underlined).
Three microliters of RNA extracted from 10 ml of bacterial culture at an OD600 of 0.05, 0.15, 0.25, 0.35, 0.45, 0.55, or 0.65 was reversed transcribed to cDNA using Superscript II (Amersham, Buckinghamshire, United Kingdom) and random hexamer primers (Promega, Wallisellen, Switzerland) according to the supplier's protocol. For the cultures of each OD600 from which we extracted RNA, serial dilutions were spread onto CSBA plates to determine the cell count (CFU).
Quantification of gene expression was achieved by real-time RT-PCR using TaqMan primers and probes created by the Assay-by-Design service of Applied Biosystems (Rotkreuz, Switzerland) based on the most conserved regions of the spxB, comC, and recA genes in S. pneumoniae strains TIGR4 (AE005672), R6 (AE007317, NC003098), D39 (NC008533, AY254852), and AB15 (AY254854) and in Streptococcus pyogenes strain MGAS10750 (CP000262) (forward primer spxB-tgt3F [5'-ACAGGTTCTGCTTACCGTGTTG-3'], reverse primer spxB-tgt3R [5'-AGGAAAAGAACTGTGTCTGCTTCAA-3'], and probe spxB-tgt3M2 [6-carboxyfluorescein {6-FAM}-TCGTTGGCTGGTTTCCAA-MGB]; forward primer comC-anyF [5'-TGGAACAGTTTGTAGCTTTGAAGGA-3'], reverse primer comC-anyR [5'-TCACGGAAGAATTTTGACAACCTCAT-3'], and probe comC-anyM2 [6-FAM-TCCCCACCTTTAATCTT-minor groove binder (MGB)]; and forward primer recA-tgt1F [5'-GGTAAAGGATCAATCATGCGTTTGG-3'], reverse primer recA-tgt1R [5'-AACCTGAGCTCATCACTTGCA-3'], and probe recA-tgt1M2 [6-FAM-TTTTGCTCCGCACGTTCA-MGB]). cDNA was diluted fourfold in the assay, and an RT-negative control was performed for every sample. Real-time RT-PCR was performed in 96-well plates using the ABI Prism 7000 sequence detection system (Applied Biosystems). The experiment was performed on three different days, and real-time RT-PCR was carried out in triplicates.
Finally, the threshold cycle values and the cell counts of the extracted RNA cultures were used to calculate the copy numbers of the samples per 102 CFU.
Quantification of DNA in the supernatants of D39 Smr and its spxB mutant using real-time PCR. The relative quantification of DNA in the supernatants of D39 Smr and its spxB mutant at different ODs was determined by real-time PCR using TaqMan primers and probes created by the Assay-by-Design service of Applied Biosystems (Rotkreuz, Switzerland) based on the 16S rRNA gene in S. pneumoniae (forward primer 16S, 5'-GACGATACATAGCCGACCTGAGA-3'; reverse primer 16S, 5'-GTAGGAGTCTGGGCCGTGTCT-3'; and 16S probe, 6-FAM-CCAGTGTGGCCGATC-MGB). Supernatants of strain D39 Smr and its spxB mutant were harvest using Micropure-EZ enzyme removers (Millipore AG, Volketswil, Switzerland), and real-time PCR was performed as described above with undiluted supernatant. The threshold cycle difference between strain D39 Smr and its spxB-deficient mutant at each OD was calculated. A difference in threshold cycle number of 1 equates to a twofold difference in initial template concentration.
Transformation assay for DNA release. DNA release was measured by transformation of competent cells of an Sms recipient strain R6 hexA mutant with cell-free filtrates from the D39 Smr strain or its spxB mutant as described earlier (21).
D39 Smr was a spontaneous mutant selected from CSBA plates containing 300 µg/ml streptomycin after inoculation with 200 µl of a stationary-phase culture (OD600, 0.8) for 24 h at 37°C in a 5% CO2-enriched atmosphere.
To delete hexA in R6, a 2.6-kb fragment of the hexA gene of strain 108.21 (nonencapsulated S. pneumoniae) was amplified (with primers hexA_f11 [5'-AGAGACAGAAAATGGCGATAGAAA-3'] and hexA_b2641 [5'-ATAGACAAAAGGGAGCGACAATG-3']) and cloned into pGEM-T Easy vector (Promega, Wallisellen, Switzerland). A 1,000-bp fragment of hexA was cut out with HindIII and was replaced with an erythromycin cassette (ermB of pJDC9). S. pneumoniae strain R6 was transformed with the whole plasmid, and recombinants were selected on CSBA plates containing erythromycin (2 µg/ml). Positive recombinants were confirmed by Southern blotting, PCR and an increased mutation rate to rifampin resistance (data not shown).
An overnight culture of strain D39 Smr or its spxB mutant was prepared with 3 to 10 colonies in 5 ml BHI broth containing 5% FCS. One hundred microliters of culture was subcultured in 5 ml BHI broth with 5% FCS and grown to mid-log phase (OD600, 0.5). Two milliliters of culture was then pelleted at 2,500 x g and 4°C for 10 min and washed twice with 5 ml Hanks medium to remove extracellular DNA. The pellet was diluted 100-fold in BHI broth with 5% FCS, and 20 ml was incubated at 37°C.
Samples of 0.2 ml were taken at OD600s of 0.05, 0.15, 0.25, 0.35, 0.45, 0.55, 0.65, and 0.75. Cells were removed by filtration and centrifugation for 60 s using Micropure-EZ enzyme removers (Millipore AG, Volketswil, Switzerland). To maximize DNA recovery, 50 µl Tris-EDTA buffer (pH 8.0) was added to the Micropure-EZ reservoir and spun for 30 s. Filtrates were stored for 1 to 2 days at –20°C until use.
Competent cells of the R6 hexA mutant were prepared by inoculating BHI broth containing 5% FCS with 3 to 10 colonies. Overnight cultures were diluted 1:100 in fresh broth and grown to an OD600 of 0.15. The culture was diluted 1:20 in BHI broth with 5% FCS or TSB competence 8.0 medium prewarmed to 30°C, and aliquots of 750 µl were incubated for 15 min. CSP-1 (Neosystems, Strasbourg, France) was added to a final concentration of 100 ng/ml and incubated for 15 min at 30°C, and then 250 µl of cell-free filtrates was added and incubated for 40 min at 30°C and then for 90 min at 37°C. Aliquots of 200 µl were spread in duplicates on CSBA plates containing 200 µg/ml streptomycin, and transformants were counted after 24 h. For each experiment, three independent measurements were performed on different days.
Supplementation of culture medium of mutant D39 Smr
spxB with H2O2.
In order to complement the spxB-deficient mutant with physiological concentrations of H2O2, the accumulation of H2O2 in the supernatant of strain D39 Smr was first determined. An overnight culture was diluted 1:50 in BHI broth with 5% FCS and was grown to mid-log phase (OD600, 0.5). Cells from 2 ml culture were pelleted at 2,500 x g and 4°C for 10 min and washed twice with 5 ml Hanks medium. The pellet was diluted 100-fold in BHI broth with 5% FCS and incubated at 37°C. Samples of 0.2 ml were withdrawn at different OD600s. The H2O2 concentration in the supernatant was measured by using the Amplex Red hydrogen peroxide/peroxidase assay kit (Molecular Probes, Eugene, OR). Fifty microliters of bacterial culture was applied to a 96-well plate (Nunclon Nalge Nunc, Roskilde, Denmark), and 50 µl Hanks medium containing 0.2 U/ml horseradish peroxidase and 100 µM Amplex Red reagent were added. The absorbance was read at a wavelength of 563 nm (SpectraMax GeminiXS; Molecular Devices, Sunnyvale, CA). Concentrations were determined based on a standard. The concentrations of H2O2 in the supernatant of D39 Smr at OD600s of 0.005, 0.05, 0.15, 0.25, 0.45, and 0.75 were 1.5, 150, 270, 320, 525, and 480 µM, respectively.
To mimic H2O2 concentrations in the growth medium, the spxB-deficient mutant was grown in 20 ml BHI broth with 5% FCS. At the start, 0.05 µmol H2O2 (Merck, Darmstadt, Germany) was added to reach an initial concentration of 2.5 µM. Thereafter, H2O2 was added at intervals of 10 min for a total of 300 min. The amount of H2O2 added was incrementally increased by 0.05 µmol for each subsequent addition.
Statistical analyses.
Statistical analyses were done in StatView version 5.0 (SAS Institute Inc., Cary, NC). Proportions were compared with the chi square test or Fisher's exact test, and mean differences were assessed by Student's t test. A cutoff P value of
0.05 (two tailed) was used for all statistical analyses.
|
|
|---|
![]() View larger version (24K): [in a new window] |
FIG. 1. spxB gene expression in strain D39 during the lag and log phases. D39 was cultured in BHI broth with 5% FCS. Left y axis, the spxB transcription levels were determined by real-time RT-PCR and expressed as the copy number per 100 CFU. Mean values of triplicates from three independent experiments (±SE) are presented. Right y axis, CFU per ml at each OD at which the spxB expression was measured. Presented are mean values of triplicates from three independent experiments.
|
![]() View larger version (25K): [in a new window] |
FIG. 2. Transformation frequency of strain D39 Smr and its spxB mutant at an OD600 of 0.15. Strain D39 Smr and its spxB mutant were grown to an OD600 of 0.15 in BHI broth with 5% FCS. The transformation frequency was measured in TSB competence 8.0 medium with and without the addition of CSP-1, and the number of Rifr transformants per CFU was calculated. Mean values of triplicates from three independent experiments (±SE) are presented.
|
![]() View larger version (35K): [in a new window] |
FIG. 3. comC and recA gene expression and spontaneous transformation frequencies of strain D39 Smr and its spxB mutant during the time of competence. Strain D39 Smr and its spxB mutant were grown to OD600s of 0.05 to 0.45 in BHI broth with 5% FCS. (A and B) Left Y axes, the comC (A) and recA (B) gene transcription levels (gray and white bars) were determined by real-time RT-PCR and expressed as the copy number per 100 CFU in strain D39 Smr compared to its spxB-deficient mutant at each OD. Mean values of triplicates from three independent experiments (±SE) are presented. *, P < 0.05; the P values were calculated by comparing the comC or recA gene expression in D39 Smr with the comC or recA gene expression in D39 Smr spxB at each OD. Right y axes, the spontaneous transformation frequencies were measured in TSB competence 8.0 medium, and the number of Rifr transformants per CFU was calculated. Mean values of duplicates from two independent experiments (±SE) are presented. Gray squares and solid lines, D39 Smr; white squares and broken lines, D39 Smr spxB knockout mutant. (C) Growth curves in BHI broth supplemented with 5% FCS of strain D39 Smr and its spxB knockout mutant. (D) CFU per ml of each OD presented in panel C for strain D39 Smr and its spxB knockout mutant.
|
Expression of comC and recA genes in D39 Smr and the spxB knockout mutant. In strain D39 Smr, transcription levels of comC (an early competence gene) and recA (a late competence gene) were highest between OD600s of 0.05 and 0.15, which is consistent with spontaneous competence. Deletion of the spxB gene significantly reduced comC and recA expression at an OD600 of 0.05 (P = 0.004 and P = 0.040, respectively) and at an OD600 of 0.15 (P = 0.028 and P = 0.033, respectively) (Fig. 3A and B). Growth of the spxB mutant in BHI broth supplemented with 5% FCS was slightly delayed compared to that of its parent strain D39 Smr and required 30 to 45 min longer to reach an OD600 of 0.75 (Fig. 3C).
Influence of the spxB gene on DNA release. DNA release has been shown to be associated with competence (21). Therefore, we investigated whether deletion of spxB also influenced DNA release. Amounts of DNA in the supernatants of D39 Smr strain and its spxB mutant were determined by real-time PCR at OD600s of 0.05, 0.15, 0.25, and 0.35 with and without the addition of CSP-1. Deletion of the spxB gene lowered the DNA content in the supernatant up to 3.5-fold at an OD600 of 0.15. Addition of CSP-1 increased the DNA quantity in the supernatants of both the D39 Smr strain and the spxB mutant. However, addition of CSP-1 could not fully restore DNA release in the supernatant of the spxB mutant (Fig. 4A).
![]() View larger version (29K): [in a new window] |
FIG. 4. DNA release of strain D39 Smr and its spxB mutant during the lag and log phases. Bacteria were grown to different ODs in BHI broth with 5% FCS. DNA release into the supernatant was measured with and without the addition of CSP-1 by real-time PCR (A) or as the number of transformants as described by Moscoso and Claverys (21) (B). (A) The DNA quantity in the supernatant is expressed as the fold difference between DNA in the supernatant and that for D39 Smr without the addition of CSP-1 (±SE). (B) Values for DNA release represent streptomycin-resistant transformants per ml. Mean values of duplicates from three independent experiments (±SE) are presented. * and **, P < 0.05; the P values were calculated by comparing the DNA release of D39 Smr with the DNA release of D39 Smr spxB at each OD without (*) or with (**) the addition of CSP-1.
|
0.025). Addition of CSP-1 increased DNA release significantly between OD600s of 0.05 and 0.55 in strain D39 Smr (P
0.003) and in the spxB mutant (P
0.0392). However, DNA levels in the mutants never reached those in the parent strain (P
0.0023). Influence of supplementation with acetate and H2O2 on DNA release in the spxB mutant. In order to investigate whether the end products of SpxB, i.e., H2O2 and/or acetyl phosphate, played a role, DNA release was measured in the spxB mutant with H2O2 supplementation and/or the addition of acetate. However, the compounds alone or in combination did not influence DNA release (Fig. 5).
![]() View larger version (28K): [in a new window] |
FIG. 5. DNA release of the spxB-deficient mutant grown in culture medium supplemented with acetate and/or H2O2. Bacteria were grown to different ODs in BHI broth plus 5% FCS with and without acetate and/or H2O2. No CSP-1 was added to the cultures. Values for DNA release represent streptomycin-resistant transformants per ml. Mean values of triplicates from three independent experiments (±SE) are presented.
|
|
|
|---|
Supplementation with CSP restored spontaneous transformability in the spxB mutant. Therefore, deletion of spxB did not affect the response to CSP, DNA uptake, or recombination. Others have shown that expression of spxB is not controlled by CSP (25, 26).
It may be that the role of SpxB in competence is energy supply and is similar to the role of NADH oxidase. Competence in S. pneumoniae depends on the availability of oxygen (1) and high levels of ATP (6). Energy supply is required for pneumococci to enter competence and for the uptake of transforming DNA (6). Most of the ATP supply in S. pneumoniae is derived from the glycolytic breakdown of glucose, which is more efficient in the presence of NADH oxidase. NADH accumulated during glycolysis is reoxidized by the NADH oxidase using O2 (1, 4, 10, 11). SpxB also utilizes O2 and produces the energy-rich acetyl phosphate, a potential source of ATP (24). In addition, knockout of the spxB gene reduces the ATP level, as shown by Pericone et al. (24). However, addition of CSP restored transformability, which speaks against the energy hypothesis for the effect of SpxB on competence.
SpxB generates H2O2 and acetyl phosphate. Therefore, we investigated whether either of the two compounds may mediate the observed effects of spxB deletion on DNA release. Supplementation of the spxB mutant with H2O2 and/or acetate (restores the acetyl phosphate level [29]) also revealed no effect on DNA release. Therefore, we found no indication of an intracellular effect for either H2O2 or acetate. We cannot exclude the possibility that more sophisticated ways of supplementation would have shown an effect. The hypothesis seemed attractive, because low intracellular concentrations of H2O2 may not be toxic but may induce oxidative stress and trigger competence (7, 28). Also, Kim et al. demonstrated that acetyl phosphate can act as an intracellular messenger (17), and Spellerberg et al. (29) showed that reduced adherence in an spxB mutant can be restored by addition of 0.1% sodium acetate.
Lastly, we investigated whether a direct toxic effect of H2O2 may have contributed to DNA release (3). Supplementation of the parent strain with catalase did not reduce DNA release significantly. The limited effect of catalase supplementation on DNA release was not due to an insufficient amount of catalase addition, since the H2O2 concentration in the supernatant was at an undetectable level during the whole experiment (data not shown). However, catalase supplementation may not be appropriate to study the effect of endogenously produced H2O2, since catalase cannot penetrate cell membranes.
In conclusion, this study provides evidence for a role of the strain D39 spxB gene in competence; however, the mechanism remains elusive.
We thank Suzanne Aebi for excellent technical assistance; Sidi Christen for encouragement, advice, and fruitful discussions; and Jean-Pierre Claverys for critical reading of the manuscript and helpful suggestions.
Published ahead of print on 7 December 2007. ![]()
|
|
|---|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Copyright © 2009 by the American Society for Microbiology. For an alternate route to Journals.ASM.org, visit: http://intl-journals.asm.org | More Info»