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Journal of Bacteriology, March 2008, p. 1518-1530, Vol. 190, No. 5
0021-9193/08/$08.00+0 doi:10.1128/JB.01640-07
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Laboratoire des Interactions Plantes Pathogènes, UMR 217 INRA/UMPC/AgroParisTech, 16 rue Claude Bernard, 75005 Paris, France,1 Isotopenlabor der TNF, Universität zu Lübeck, Ratzeburger Allee 160, D-23538 Lübeck, Germany,2 Institut für Physik, Universität zu Lübeck, Ratzeburger Allee 160, D-23538 Lübeck, Germany,3 Unité de Microbiologie et Genetique, UMR CNRS/INSA/UCB 5122, 69622 Villeurbanne, France,4 Laboratoire d'Ingénierie des Protéines et Contrôle Métabolique Institut Jacques Monod/CNRS/Universités Paris 6 and 7, 2 place Jussieu, 75251 Paris Cedex 05, France5
Received 10 October 2007/ Accepted 17 December 2007
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S transcriptional factor is necessary for this control. Pathogenicity tests showed that FtnA and the Bfr contribute differentially to the virulence of E. chrysanthemi depending on the host, indicating the importance of a perfect control of iron homeostasis in this bacterial species during infection. |
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In many bacteria, the removal of an excess of ferrous iron by its subsequent oxidation is achieved by ferritins or ferritin-like proteins. Ferritins constitute a broad superfamily of iron storage proteins, widespread in all domains of life, in aerobic or anaerobic organisms (3, 37). These proteins fall into three classes: ferritins that are heme free, found in pro- and eukaryotes, heme-containing bacterioferritins, found only in bacteria, and Dps proteins (DNA protein from starved cells), now called miniferritins, present only in prokaryotes (11, 52). They are composed of 24 identical subunits for ferritins and bacterioferritins and 12 identical subunits for the Dps proteins. These subunits assemble to make a spherical protein shell surrounding a central cavity able to hold up to 2,000 to 3,000 ferric iron atoms for ferritins and 500 atoms for miniferritins (3, 8). These iron storage proteins possess a binuclear di-iron center that constitutes the ferroxidase center involved in the oxidation of the ferrous iron (22, 27, 28, 53). Oxygen and hydrogen peroxide are the major cellular oxidants consumed during this reaction (7, 9, 60). Ferritins can concentrate and store iron as a mineral (hydrated ferric oxide) in their central cavity (10, 25, 32). This sequestered iron is nonreactive and can serve as a reserve when the exogenous availability of this metal becomes limited. Thus, besides their role in iron storage, maxi- and miniferritins are also involved in the detoxification of this metal, dioxygen, and hydrogen peroxide under certain conditions (24, 29, 31, 54, 56, 58, 59). This work was aimed at elucidating the role of the maxiferritins in the control of iron homeostasis in E. chrysanthemi 3937. The results obtained show that by participating in the control of iron homeostasis, these proteins also have a role in the virulence of this bacterium.
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TABLE 1. Bacterial strains, bacteriophage, and plasmids used in this study
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interposon coding for spectinomycin resistance from pHP45
hydrolyzed with EcoRI was cloned into the MunI site of the ftnA gene, giving rise to plasmid pTF42. The
-Km interposon, coding for kanamycin resistance from pHP45
-Km hydrolyzed with SmaI, was cloned into the T4 polymerase-blunted PstI site of the bfr gene, giving rise to plasmid pAB5. The transcriptional ftnA::uidA and bfr::uidA fusions were constructed in vitro similarly. The rpoS and
ryhB mutants were constructed as follows: a 650-bp genomic internal fragment of the rpoS gene was amplified by PCR with primers rpoS5 and rpoS6 (Table 2). These primers contained an extra BamHI site at the 5' ends, and the resulting PCR fragment was cloned into the BamHI site of vector pUC18, giving rise to plasmid pSR2488. The chloramphenicol resistance cartridge from pCKC15 hydrolyzed with SmaI was then introduced into the unique HpaI site located in the PCR fragment internal to the rpoS gene. This insertion was then introduced into the E. chrysanthemi chromosome by marker exchange recombination between the chromosomal allele and the plasmid-borne mutated allele. The recombinants were selected after successive cultures in low-phosphate medium in the presence of chloramphenicol, conditions in which pBR322 derivatives are very unstable. Correct recombination was confirmed by PCR and by Western blotting using anti-RpoS antibodies (data not shown). The 5' and 3' parts of the ryhB locus were PCR amplified with two couples of primers containing one degenerated primer with an extra BamHI site and cloned into the pGEM-T Easy vector. These fragments were hydrolyzed with BamHI/EcoRI or BamHI/SpeI and cloned into the pBC vector cut with EcoRI and SpeI. The
interposon coding for spectinomycin resistance from pHP45
hydrolyzed with BamHI was cloned into the BamHI site of the
ryhB gene, giving rise to plasmid pAB9. The wild-type strain of E. chrysanthemi was electroporated with the corresponding plasmids. Transformants were purified once on L agar plates containing the appropriate selection marker. Cultures grown with the corresponding antibiotics in L broth were 20-fold diluted in low-phosphate medium supplemented with iron in order to promote plasmid destabilization with exchange recombination of the disrupted DNA insert into the E. chrysanthemi chromosome. Recombinants were selected as described previously (18). The presences of disrupted ftnA or bfr genes as well a disrupted and deleted
ryhB gene in these clones were confirmed by Southern blot hybridization experiments. Double or triple mutants were constructed by using the generalized transducing phage
EC2 (47). |
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TABLE 2. Primers used in this work
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59Fe labeling and preparation of whole-cell extracts.
Cultures of the wild-type strain and the ferritin-deficient mutants grown overnight were diluted 100-fold in L broth and grown to an optical density at 600 nm (OD600) of 0.4 when 1 µM of 59FeCl3 (20 mCi·mg–1 iron) was added to the cultures. Ninety minutes after the addition of iron, cells (OD600 of
1.5) were harvested by centrifugation. Cells were washed once with a solution containing 50 mM potassium phosphate (pH 7.8)-0.1 mM EDTA-10 mM MgCl2 and centrifuged. Pellets were resuspended in 400 µl of the same solution in which DNase I and lysozyme were added at final concentrations of 0.1 mg/ml and 0.2 mg/ml, respectively, and incubated 30 min at 4°C. Cell lysis was achieved by six freezing/thawing cycles, and samples were kept at –20°C. Twenty-five to thirty micrograms of proteins was loaded and run on a 10% polyacrylamide nondenaturing gel. Dried gels were autoradiographed at –80°C for 12 to 24 h using Kodak (Chalon sur Saône, France) X-ray film.
Mössbauer spectroscopy.
For each Mössbauer measurement, a 750-ml bacterial culture in 3-liter Erlenmeyer flasks was required in order to obtain approximately 750 µl of packed cells. Cultures of wild-type and bfr, ftnA, and bfr ftnA mutant strains were diluted 60-fold in Tris medium supplemented with glucose and grown to the early stationary growth phase. [57Fe(DHBA)3]3– was added to the cell suspensions at a final concentration of 5 µM 57Fe-100 µM DHBA. Cells were grown additionally for 30, 60, and 120 min, respectively. Cells were then cooled down to 4°C within 2 min, harvested, washed in cold Tris medium, and transferred into Delrin Mössbauer sample holders. Sample volumes were about 700 µl. Sample thickness did not exceed 9 mm. The containers were quickly frozen in liquid nitrogen and kept in a liquid nitrogen storage vessel until the measurement was performed. The Mössbauer spectra were recorded in horizontal transmission geometry using a constant acceleration spectrometer operated in conjunction with a 512-channel analyzer in the time scale mode. The source was at room temperature and consisted of 0.75 GBq [57Co] diffused in Rh foil (AEA, Braunschweig, Germany). The spectrometer was calibrated against a metallic
-iron foil at room temperature, yielding a standard line width of 0.24 mm/s. The Mössbauer cryostat was a helium bath cryostat (MD306; Oxford Instruments). A small field of 20 mT perpendicular to the
-beam was applied to the tail of the bath cryostat using a permanent magnet. Isomer shift,
, quadrupole splitting,
EQ, and the percentage of the total absorption area were obtained by least-square fits of Lorentzian lines to the experimental spectra. Experiments were performed two times, and data from one experiment are shown.
General DNA methods.
DNA manipulations (chromosomal DNA isolation, cloning, and electrophoresis) were described previously (18). Plasmids were extracted by using the QIAprep Spin Miniprep kit (Qiagen, Courtaboeuf, France). All cloning experiments were performed in the DH5
strain of E. coli. DNA/DNA hybridization analysis was performed by using Denhardt's method as described previously by Sambrook et al. (48). The primers used for PCR amplification of E. chrysanthemi genomic fragments are described in Table 2. PCR was performed using a DNA thermocycler (Hybaid PCR Express system) with a denaturation step at 94°C for 60 s, an annealing step at 52°C for 75 s, and an extension step at 72°C for 75 s, which was followed by an extension step at 72°C for 10 min. PCR products were cloned into the pGEM-T Easy plasmid according to the manufacturer's instructions. Nucleotide sequencing of PCR products was obtained from Genome Express (Meylan, France). For hybridization, DNA probes were prepared by using the Prime-a-Gene labeling system according to the manufacturer's recommendations (Promega, Charbonnière, France).
RNA isolation. A culture grown overnight in L broth was diluted 60-fold in Tris medium-glucose or 100-fold in L broth. The culture was grown under shaking until an absorbance at 600 nm of 0.4 was reached, and iron (20 µM FeSO4) was added or not added. A total of 7.5 ml of culture was harvested by centrifugation for 10 min at 4°C (8,000 x g). The cell pellet was then resuspended in 600 µl of buffer A (20 mM sodium acetate [pH 5.5], 1 mM EDTA) at 4°C. After the addition of 33 µl of 10% sodium dodecyl sulfate (SDS) and 600 µl of hot acidic phenol (65°C) equilibrated with buffer A, the sample was vigorously mixed for 30 s and incubated for 10 min at 65°C. The aqueous phase was reextracted with phenol-chloroform (1:1) equilibrated with 10 mM Tris (pH 7). RNA was precipitated overnight with 30 µl of 3 M sodium acetate and 800 µl of ethanol. The RNA pellet was washed with 70% ethanol and resuspended in 35 µl of water treated with diethyl pyrocarbonate. Northern blot analysis was performed after electrophoresis: 3 µg of RNA were loaded and run on a 1% Tris-borate-EDTA agarose gel containing 7.2% formaldehyde. After electrophoresis, RNAs were transferred onto a positively charged nylon membrane (N+ Hybond; GE Healthcare), and hybridizations were carried out as described previously (12). Membranes were washed twice at 65°C in 5x SSC (1x SSC is 0.15 M NaCl plus 0.015 M sodium citrate)-0.5% SDS and in 1x SSC-0.5% SDS. 16S RNA was used as a control. Membranes were placed against Kodak (Chalon sur Saône, France) X-ray film at –70°C for a few days.
Determination of β-glucuronidase activities in bacterial culture. An inoculum of an L culture grown overnight was 60-fold diluted in Tris medium containing glucose or 100-fold in L broth with the appropriate antibiotics. The inoculated culture was divided into two subcultures supplemented or not with 20 µM FeSO4. Cultures were grown aerobically at 30°C. Samples were collected and immediately frozen. Enzymatic activities were assayed as reported previously (51). β-Glucuronidase activity is expressed in nanomoles of paranitrophenol liberated per minute per OD600 unit.
Pathogenicity assays. Pathogenicity tests were performed on chicory leaves and on potted African violets (Saintpaulia ionantha) cv. Blue Rhapsody. Bacterial cells were plated onto L agar medium and incubated for 24 h at 30°C. Cells were suspended in an NaCl solution (9 g per liter) to give an OD600 of 0.4. The resulting suspension (4 µl) was used to inoculate chicory leaves, whereas 100 µl of inoculum was used for one leaf per African violet plant as described previously (51). Progression of the symptoms was scored during 4 days for the chicory test and 9 days for the Saintpaulia test.
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70 promoter was identified by computational analysis. For confirmation, a primer extension experiment was performed. The extension reaction product showed that the transcription of the ftnA gene started at a C nucleotide situated 35 bases upstream of the ATG start codon, indicating that the anticipated promoter was functional (data not shown).
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FIG. 1. Genetic organization of the loci encoding the maxiferritins FtnA (A) and Bfr (B) of E. chrysanthemi 3937. The –35 and –10 promoter elements are boxed. Transcriptional starts identified by primer extension experiments are indicated by an arrow. The promoter element TGCGTTTAAT of the bfd-bfr operon, which is similar to the RpoS factor recognition consensus sequence, is boxed with a dotted line. Inverted repeats situated at the 3' untranslated region of the bfr and ftnA genes that may form a hairpin are indicated by a small stem-loop. The bfr and ftnA genes are transcribed in opposite directions on the chromosome. RBS, ribosome binding site.
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70 promoter that can be associated with the transcription start situated ca. 30 nucleotides upstream from the ATG codon of the bfd gene. For the second transcriptional start, a –10 promoter element with the TGCGTTTAAT sequence could be identified. However, no –35 promoter element could be associated with this –10 region. The sequence of this –10 promoter element is reminiscent of the TGN0-2C(C/T)ATA(C/A)T consensus sequence identified for the rpoS-encoded alternative sigma factor
S in E. coli (26). At the 3' untranslated region of the ftnA and bfr genes, inverted repeats may form a hairpin that could act as a transcription terminator. Construction of the bfr and ftnA mutants. The bfd-bfr and ftnA loci were amplified by PCR and cloned into the pGEM-T Easy vector as described in Materials and Methods. The bfr and ftnA genes were inactivated by interposons or transcriptional uidA cassettes (see Materials and Methods). The disrupted ftnA and bfr genes were then introduced back into the chromosome of E. chrysanthemi by reverse genetics as described in Materials and Methods. The ftnA bfr double mutant was constructed by transducing the ftnA mutation into the bfr mutant with phage phiEC2. The presence of the disrupted genes in these mutants was confirmed by Southern experiments (data not shown). The absence of production of the FtnA and Bfr proteins in the corresponding mutants was checked by labeling exponentially growing cells with 59FeCl3. Crude cell extracts from the wild-type strain and the ftnA, bfr, and bfr ftnA mutants were analyzed by native polyacrylamide gel electrophoresis as described in Materials and Methods (Fig. 2). E. chrysanthemi wild-type extracts showed three major bands corresponding to iron-labeled protein species (Fig. 2). The upper band was missing in the ftnA mutant, whereas the central band was missing in the extracts of the bfr mutant. Both the upper and central iron-labeled bands were not detected in the cell extracts from the double mutant, indicating that the upper and central bands correspond to the FtnA and Bfr proteins, respectively.
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FIG. 2. Analysis of 59Fe-labeled E. chrysanthemi proteins from soluble cell extracts after electrophoresis on a native 8% polyacrylamide gel. Bacteria were grown in L medium to an OD600 of 0.4, and 59FeCl3 was added at a final concentration of 1 µM. Samples were collected 90 min after the addition of iron. Whole-cell extracts were prepared as described in Materials and Methods. The lower band probably corresponds to the Dps1 protein of E. chrysanthemi, as it is missing in a Dps1 gene mutant (data not shown). Lane 1, bfr mutant; lane 2, bfr ftnA mutant; lane 3, ftnA mutant; lane 4, wild-type strain.
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TABLE 3. Growth capacity of the E. chrysanthemi ferritin-deficient mutants compared to the wild-type strain in Tris medium with different iron avalaibilitiesa
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As the lack of functional ferritins could reduce the ability of bacteria to save iron when this metal becomes abundant, we checked the capacities of the different ferritin mutants to store iron by growing cells overnight in L medium supplemented with 1, 10, or 50 µM 55FeSO4. For 1 µM iron, the wild-type strain and the different ferritin mutants accumulated the same quantity of iron (data not shown). Amounts of 55Fe taken up and stored by the cells increased with increasing concentrations of this metal (Fig. 3A and B). For both iron concentrations, there was no significant difference in the amount of iron taken up by the wild-type strain and the bfr or the ftnA mutant (Fig. 3A and B). However, the bfr ftnA double mutant accumulated less iron than the wild-type strain (Fig. 3A and B). This defect in iron accumulation was more pronounced at the highest FeSO4 concentration tested. Indeed, the double mutant accumulated 20% less iron than the wild-type strain at an FeSO4 concentration of 10 µM and 33% less iron at a concentration of 50 µM (Fig. 3A and B). These data were corroborated by analyzing the total Fe content in the wild-type and ferritin-deficient mutant strains by ICP-AES. In L medium supplemented with 50 µM FeCl3, only the double mutant displayed a decrease of 30% in the total amount of intracellular iron in comparison to the iron content of the wild-type strain and the bfr and ftnA mutants (data not shown).
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FIG. 3. Iron accumulation in the wild-type strain and the ferritin-deficient mutants of E. chrysanthemi. Bacteria were grown overnight in L broth with 10 µM (A) or 50 µM (B) FeSO4. Cells were harvested on filters and washed as described in Materials and Methods. The amounts of 55Fe taken up by cells of the wild-type (WT) strain and the different ferritin-deficient mutants are indicated in picomoles of iron per OD600 unit. Experiments were performed in triplicate, and standard deviations are shown.
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(Fe2O3H3 PO4) FtnA + 3H+. In addition, the observed excess of Fe2+ in spectra of the ftnA and bfr ftnA mutants indicates an impaired balance of general iron metabolism after [57Fe(DHBA)3]3– uptake (Fig. 4A). Due to the lack of bfr and ftnA genes in the double mutant, the ferric iron contribution cannot be attributed to the maxiferritin Bfr or FtnA. Rather, we suggest that this species represents ferric Dps. We further assume that the same is true for the ftnA mutant.
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FIG. 4. Mössbauer spectra of Erwinia chrysanthemi 3937 cells measured at 77 K (A) and 2 K (B). T represents the relative transmission, and v represents the energy scale measured as the velocity in mm/s. Genotypes of the different strains are indicated on the spectra. Cells were grown to an OD600 of 0.8 and incubated for 120 min with 5 µM 57Fe-100 µM DHBA. (A) Each spectrum is characterized by two quadrupole doublets, the parameters of which are listed in Table 4. The dashed gray line corresponds to the least-square fits of ferric high-spin iron to the experimental spectra, and full gray lines correspond to ferrous high spin. (B) Mössbauer spectra from cells of the bfr ftnA double mutant and the wild-type (WT) strain of E. chrysanthemi 3937 measured at 2 K. In both spectra, a ferrous high-spin component is observed (full gray lines). In the double mutant, the ferric ion doublet is still visible at 2 K (dashed gray line), whereas in the wild-type strain, this component broadens at temperatures below 4.3 K due to magnetic splitting, and the doublet disappears. The magnetic splitting is not resolved due to relaxation effects and was not fitted.
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TABLE 4. Mössbauer parameters of spectra of early-stationary-phase E. chrysanthemi cells after 120 min of incubation with [Fe(DHBA)3]3– determined by least-square fits of Lorentzian lines
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FIG. 5. Growth of the wild-type strain and the ferritin-deficient mutants of E. chrysanthemi under oxidative and nitrosative conditions. Cells were grown in L medium with intensive shaking under normal conditions or in the presence of 0.5 mM of H2O2, 6 µM paraquat, 2.5 µM streptonigrin, or 70 µM spermine NONOate, as indicated on the graphs. Filled squares, wild-type strain; open circles, bfr mutant; open diamonds, ftnA mutant; open triangles, bfr ftnA mutant. Experiments were performed five times, and the data reported are the means of three independent experiments, with standard deviations corresponding to less than 5%.
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FIG. 6. Pathogenicity of the wild-type strain and its ferritin-negative mutants. (A) Symptoms caused by Erwinia chrysanthemi strain 3937 and its ferritin-deficient mutants on chicory leaves 36 h postinoculation. (B) Pathogenicities of the wild-type (WT) strain (solid line) and the ftnA mutant (dashed line) on African violets. The progression of systemic symptoms (i.e., fully macerated leaf and petiole) was scored for 9 days as indicated. Experiments were performed in triplicate, and standard deviations are shown.
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ryhB mutant by reverse genetics (see Materials and Methods). Increased ftnA transcript levels were detected in total RNA isolated from the
ryhB strain in comparison to RNAs isolated from the wild-type strain (Fig. 7C). RyhB RNA abundance was notably increased under conditions of iron starvation (Fig. 8A). Furthermore, the ryhB gene is highly expressed in a fur mutant regardless of the iron concentration (Fig. 8B), and this high level of transcription greatly decreased the amount of ftnA RNA, as shown in Fig. 8C. Thus, in E. chrysanthemi, the control of ftnA gene expression involves the transcriptional repressor Fur and a homolog of the small antisense RNA RyhB.
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FIG. 7. Occurrence of a ryhB gene in E. chrysanthemi. (A) Sequence alignment of the promoters of the ryhB genes of E. coli (Ec) and E. chrysanthemi 3937 (Ech). The –35 and –10 promoter elements are boxed, and the potential Fur box is underlined. The transcriptional start identified in E. coli is indicated by an arrow. Nonconserved nucleotides are indicated by asterisks. (B) Sequence complementarity between the E. chrysanthemi RyhB RNA and the 5' part of the ftnA transcript. The identified transcriptional start of the ftnA gene is indicated by an arrow, and the potential translational starts are boxed. Numbers indicate nucleotide positions in RyhB RNA. (C) Northern blot analysis of E. chrysanthemi ftnA messenger accumulation in the wild-type (WT) strain and the ryhB mutant. Total RNAs were extracted from cells at the late exponential growth phase, and 3 µg of RNA was blotted as described in Materials and Methods. Northern blot analysis was performed as described in Materials and Methods.
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FIG. 8. Northern blot analyses of ryhB and ftnA gene expression in E. chrysanthemi. (A) The wild-type (WT) strain was grown in Tris medium until an OD600 of 0.7 was reached, and 20 µM FeSO4 was added. Samples were collected every 30 min. (B) RyhB RNA accumulation in the wild-type strain of E. chrysanthemi and its Fur– derivative. Cells were grown in L broth until an OD600 of 1 was reached, and 20 µM FeSO4 was added. Samples were collected every 30 min. (C) ftnA messenger accumulation in the wild-type strain and the fur mutant. Cells were grown in L broth until an OD600 of 1 was reached, and 20 µM FeSO4 was added. Samples were collected every 20 min. Northern experiments were performed as described in Materials and Methods.
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ryhB mutant (Fig. 9A). Interestingly, in L broth, the expression of the bfr::uidA transcriptional fusion seemed to be dependent on cellular density since the highest expression occurred at the beginning of the stationary phase (Fig. 9B). Thus, we checked whether quorum sensing was implicated in this control. Transcription of the bfd-bfr operon in the wild-type strain was identical to that in the expR or canR mutant, which are altered in quorum-sensing regulation (data not shown). Since the
S transcription factor was shown to be involved in the regulation of the bfr gene in E. coli (26), we checked this possibility in E. chrysanthemi. We thus transduced the bfr::uidA fusion into an rpoS mutant of E. chrysanthemi 3937. In an rpoS genotype, the transcription of the bfd-bfr operon was reduced to a basal level, even at a high cellular density (Fig. 10A). Indeed, very low levels of bfr RNA were detected by Northern blot hybridization in total RNAs isolated from the E. chrysanthemi rpoS mutant (Fig. 10B). McHugh et al. (38) previously demonstrated that the Fur transcriptional repressor was involved in the regulation of the bfd-bfr operon in E. coli. We also examined the role of the Fur repressor in the expression of the bfd-bfr operon. In a fur genotype, there was only a very low level of transcription of the bfr gene (Fig. 11A). Since the E. chrysanthemi fur mutant is altered in its growth capacity and displays a lower final cellular density than that of the wild-type strain (18), we checked the levels of the rpoS gene transcripts in this mutant. As shown in Fig. 11B, there was a lower level of accumulation of rpoS transcripts in RNAs isolated from the fur mutant. In this mutant, the pattern of rpoS RNA accumulation correlated with the observed level of transcription of the bfr gene. Thus, in a fur mutant, the reduced level of expression of the bfr gene is likely caused by a decreased accumulation of the rpoS RNA.
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FIG. 9. Analysis of bfr gene expression in E. chrysanthemi. (A) bfr messenger accumulation in the wild-type (WT) strain and the ryhB mutant. Cells were grown in L broth until an OD600 of 0.9 was reached, and 20 µM FeSO4 was added. Samples were collected every 20 min, and Northern experiments were carried out as described in Materials and Methods. (B) Expression of a transcriptional bfr::uidA fusion during bacterial growth. Cells were grown in L medium. FeSO4 (20 µM) was added at an OD600 of 0.4. Samples were collected after the addition of iron as indicated. β-Glucuronidase activity was determined as described in Materials and Methods. White bars, with iron; black bars, no iron. Experiments were performed in triplicate, and standard deviations are shown.
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FIG. 10. Effect of an rpoS mutation on the expression of the E. chrysanthemi bfr gene. (A) Expression of a transcriptional bfr::uidA fusion in the wild-type strain and the rpoS mutant. Bacterial growth in L broth was assessed by measuring the OD600 (filled squares, bfr::uidA mutant; open circles, bfr::uidA rpoS mutant). β-Glucuronidase activity was determined as described in Materials and Methods. Black bars, bfr::uidA mutant; white bars, bfr::uidA rpoS mutant. Experiments were performed in triplicate, and standard deviations are shown. (B) bfd-bfr messenger accumulation in the wild-type (WT) strain and the rpoS mutant. Cells were grown in L medium, and samples were collected during growth. Northern blot analysis was performed as described in Materials and Methods.
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FIG. 11. Effect of a fur mutation on the expression of the bfr and rpoS genes of E. chrysanthemi. (A) bfr messenger accumulation in the wild-type (WT) strain and the fur mutant. (B) Expression of the rpoS gene in the wild-type strain and the fur mutant. Bacteria were grown in L medium and collected during growth as indicated by the OD600. bfr and rpoS transcripts were detected by Northern blot analysis as described in Materials and Methods.
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In contrast to E. coli and Salmonella enterica serovar Typhimurium, strain 3937 of E. chrysanthemi harbors only two maxiferritins, since the ftnB locus is missing in its genome. The FtnB protein is a nonubiquitous ferritin-like protein that lacks the typical amino acids that form the ferroxidase center (1, 57). We constructed the ftnA, bfr, and bfr ftnA mutants by reverse genetics, and we characterized their phenotypes. No clear phenotype could be assigned to the bfr mutation. Indeed, this mutant behaved like the wild-type strain under conditions of iron deficiency or under oxidative stress conditions. Experiments measuring the total cellular iron content and Mössbauer analysis of the intracellular iron pool showed that Bfr plays no significant role in iron storage at stationary phase in E. chrysanthemi. This is in contrast to the role of the Bfr protein from Salmonella enterica serovar Typhimurium, which is an important iron reservoir and is implicated in resistance to H2O2 stress (57). Nevertheless, the E. chrysanthemi bfr mutant was less aggressive on chicory leaves, with a delay in the appearance of symptoms of maceration. Thus, the role of bacterioferritin in iron homeostasis in E. chrysanthemi remains to be elucidated.
As is the case in E. coli, the main iron storage protein in E. chrysanthemi 3937 is the ferritin FtnA (1). The absence of a functional FtnA leads to a pleiotropic phenotype. In comparison to the wild-type strain, growth of the ftnA mutant was impaired even in the presence of iron. This mutant is also more sensitive to iron deficiency than the wild-type strain. An increased sensitivity to compounds generating oxidative and nitrosative stress was also observed for the ftnA mutant. Interestingly, the ftnA mutant also grew less well under anaerobic conditions (data not shown). Thus, the reduced growth ability of this mutant not only is caused by the sensitivity to oxidative stress but is also a direct consequence of a lack of the FtnA-associated iron store. Increases in the ferrous iron/ferric iron ratio in the ftnA mutant, as determined by Mössbauer analysis, are probably the cause of its sensitivity to oxidative stress. Interestingly, inactivation by mutations of the high-affinity iron transport systems decreased the susceptibility of the ftnA mutant to oxidative stress (data not shown). Thus, by limiting the intracellular concentration of ferrous iron and reducing the cytotoxic effect of Fenton's chemistry, FtnA confers tolerance to oxygen metabolism in E. chrysanthemi. Surprisingly, the bfr ftnA double mutant is less susceptible to iron starvation than the ftnA mutant. In addition, the bfr ftnA mutant is sensitive only to oxidative stress caused by streptonigrin. However, its susceptibility is intermediate to those of the wild-type strain and the ftnA mutant. One explanation could be that there is a reduction in the total iron content of the double ferritin mutant as determined by the ICP-AES analysis. Although there is a higher Fe(II)/Fe(III) ratio, the decrease in the total iron content of this mutant could account for its intermediate phenotype. Analysis of Mössbauer spectra from the bfr ftnA mutant clearly demonstrated an Fe(III) signal that could be attributed to the ferric iron stored in Dps proteins. Indeed, we identified two genes encoding Dps proteins in the genome of E. chrysanthemi strain 3937. In the absence of maxiferritins, these proteins would limit the intracellular concentration of reactive iron by sequestering an excess of this metal. Another nonexclusive hypothesis might be that in an ftnA background, the absence of a functional Bfr results in changes in iron distribution in proteins or other components. The physiological consequences of the combination of the ftnA and bfr mutations on iron homeostasis remain to be determined.
The control of ftnA and bfr gene expression in E. chrysanthemi is similar to the regulation occurring in E. coli. Iron is a triggering signal for transcription to the ftnA gene. This control involves the Fur transcriptional repressor and a small RNA that is a functional homolog of the E. coli RyhB antisense RNA. E. chrysanthemi RNA is longer than that of E. coli (i.e., 120 versus 90 nucleotides). However, both RNAs show significant sequence identity in their last 80 nucleotides. This RNA possesses a long sequence complementarity with the 5' end of the ftnA transcript, suggesting a base-pairing mechanism of regulation similar to that described previously for E. coli (33). Indeed, in a
ryhB mutant, we observed an elevated level of the ftnA transcript. We also showed that the ryhB gene is negatively controlled by Fur. Thus, in a fur mutant, there was a very low level of the ftnA transcript in total RNA because of the overaccumulation of RyhB. No sequence complementarity between RyhB RNA and the bfd-bfr operon could be found. Our Northern experiments showed that the transcription of the bfd-bfr operon is not controlled by RyhB RNA. A high level of transcription of this operon was observed at the beginning of the stationary phase, and we found that quorum sensing is not involved in this regulatory process. The
S factor mediates this response, since transcription of the bfd-bfr operon was reduced in a rpoS mutant. This result is in agreement with the
S-regulated promoter that we identified for the bfd-bfr operon. Surprisingly, the expression of the bfd-bfr operon was also strongly decreased in a fur mutant. This regulatory response is probably indirect, since no potential Fur binding site was identified in the bfd-bfr operon sequence. However, we showed that there was a delay in the accumulation of the rpoS transcript in a fur mutant. This lower rpoS transcript level can account for the reduced expression of the bfd-bfr operon in the fur mutant. The mechanisms by which Fur modulates the transcription of rpoS or the stability of its RNA must be determined.
Mutations in the ftnA and bfr genes had different consequences on the virulence of E. chrysanthemi. All the ferritin-deficient mutants are less aggressive on chicory leaves, whereas only the ftnA mutant displayed a reduced virulence on African violets. These data are similar to those obtained for the E. chrysanthemi suf mutants, which are affected in the Suf machinery involved in the biogenesis/repair of the Fe-S centers under iron deficiency and oxidative conditions (41). Indeed, a sufA mutant lacking the [Fe-S] scaffold protein SufA is less virulent than the wild-type strain only on chicory leaves. A sufC mutant where the SufC ATPase component of the SufBCD complex is missing is altered in its pathogenicity to isolated organs and potted African violets. Our explanation may be that iron availability and oxidative stress conditions are different depending on the host tissues infected. Thus, under infection conditions where the environment is continually changing, a perfect control of iron homeostasis is important for E. chrysanthemi cells. In conclusion, although the E. chrysanthemi FtnA and Bfr proteins are highly similar to those of E. coli and S. enterica, their physiological roles seem to be different. When bacteria possess multiple maxiferritins, the respective functions of these proteins in the control of iron and dioxygen chemistry may depend on the iron metabolism machinery and the ecophysiology of the species.
This work was supported by the Institut National de la Recherche Agronomique (project SPE 0217-01) and the Procope program (grant 09636TF) from the Ministère des Affaires Etrangères. D. Expert is a researcher from the CNRS. A. Boughammoura was supported by a doctoral fellowship from the Ministère de l'Education Nationale, de l'Enseignement Supérieur, et de la Recherche.
Published ahead of print on 28 December 2007. ![]()
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S-dependent gene expression at the onset of stationary phase in Escherichia coli: function of
S-dependent genes and identification of their promoter sequences. J. Bacteriol. 186:7186-7195.This article has been cited by other articles:
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