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Journal of Bacteriology, April 2008, p. 2880-2891, Vol. 190, No. 8
0021-9193/08/$08.00+0 doi:10.1128/JB.01702-07
Copyright © 2008, American Society for Microbiology. All Rights Reserved.
,
and
Darrell Desveaux1,3*,
Department of Cell & Systems Biology, University of Toronto, 25 Willcocks St., Toronto, Ontario M5S 3B2, Canada,1 Department of Plant Pathology and Microbiology, University of California, Riverside, 900 University Ave., Riverside, California 92521,2 Centre for the Analysis of Genome Evolution & Function, University of Toronto, Toronto, Ontario, Canada3
Received 23 October 2007/ Accepted 28 January 2008
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The YopJ/HopZ family is a common and widely distributed class of effector proteins, and members of this family are found in both animal- and plant-pathogenic bacteria. Originally characterized as a cysteine protease (49), the Yersinia pestis YopJ protein was recently shown to possess acetyltransferase activity (43, 45). YopJ suppresses the immune response in animals by acetylating serine and threonine residues in the activation loop of members of the mitogen-activated protein kinase kinase superfamily, including MAPKK6, MEK2, and I
B kinase, which prevents their activation by phosphorylation and consequently inhibits their downstream signaling (43, 45, 48). Ma and colleagues recently characterized the HopZ family of YopJ homologues in P. syringae and found that three homologues, HopZ1, HopZ2, and HopZ3, were present in
42% of the 96 strains surveyed from worldwide collections (37). The HopZ family of proteins exhibited weak but significant protease activity when these workers used a fluorescence-based protease assay that was dependent on a conserved cysteine residue that is also found in YopJ (37). It remains to be determined whether the HopZ family also possesses acetyltransferase activity like that demonstrated for YopJ.
HopZ1aPsyA2 (formerly HopPsyH), HopZ1bPgyUnB647, and HopZ1cPmqES4326 (formerly HopPmaD) are closely related allelic variants and form a distinct clade restricted to P. syringae (37). HopZ2Ppi895A (formerly AvrPpiG) and HopZ3PsgB728a (formerly HopPsyV) are similar to effectors carried by the plant-pathogenic bacteria Xanthomonas spp. and Erwinia spp., respectively. These effectors are referred to below as HopZ1a, HopZ1b, HopZ1c, HopZ2, and HopZ3. A detailed evolutionary analysis demonstrated that the HopZ family diversified within the P. syringae species complex both by mutational generation of allelic variants (pathoadaptation) and by acquisition of homologs from ecologically similar bacteria via horizontal gene transfer (37). The analysis further showed that the hopZ1a allele is most similar to the ancestral hopZ allele and that the diversification of the family was most likely driven by the host defense response (37). HopZ1a, HopZ1b, and HopZ2 induce an HR in Nicotiana benthamiana, whereas HopZ3 has been demonstrated to induce an HR in snap bean (68) and tobacco (17). In addition, HopZ3 can inhibit the HR induced by AvrPto in N. benthamiana (68). Importantly, expression of the ancestral effector HopZ1a in strains carrying degenerate or alternate hopZ alleles induces an HR in multiple hosts, including Arabidopsis thaliana, while the endogenous HopZ does not (37). The detailed evolutionary characterization of the HopZ family of P. syringae type III effectors provides a unique opportunity for examining virulence and avirulence functions in an evolutionary context.
Here, we further characterized the defense response and virulence function of the HopZ family in Arabidopsis. We characterized the HopZ1a HR using growth assays, ion leakage assays, and trypan blue staining and showed that it is dependent on myristoylation-mediated membrane localization but independent of the known resistance genes RPM1, RPS2, RPS5, and RPS4. In addition, we identified a virulence function for HopZ2 and showed that it is dependent on the catalytic cysteine residue required for in vitro protease activity (37) and also on an intact myristoylation sequence. By thoroughly characterizing the virulence and avirulence functions of the HopZ family in a single host, Arabidopsis, in this study we emphasized the functional diversity of the HopZ family of type III effector proteins. This functional diversity of the HopZ proteins likely reflects (i) the diversification of host targets and/or (ii) virulence target modifications by the host surveillance system to avoid recognition.
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TABLE 1. Strains and plasmids used
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To clone C-to-A and G-to-A point mutations, a crossover PCR approach was used (36). The 5' portion of a gene was amplified by PCR using a 5' primer to the promoter and a 3' primer that spanned an
32-nt region around the desired point mutation. The 3' portion of the gene was amplified by PCR with a 5' primer which was the reverse complement of the 3' primer mentioned above and a 3' primer to the HA tag. The two PCR products were then mixed and used as a template for the subsequent PCR. The full-length promoter-gene-HA cassette with the desired mutation was amplified using the same 5' promoter primer and 3' HA tag primer and cloned into pUCP20 using the sites mentioned above for each HopZ gene.
To construct all HopZ-AvrRpt2 fusion proteins, a crossover PCR approach was used (36). For the promoter-full-length hopZ(G2A)-HA-avrRpt2(
1-79) fusions (where G2A indicates a mutation of glycine to alanine in the protein sequence), the 5' portion of the fusion gene was amplified by PCR using a 5' primer to the hopZ promoter and a 3' primer to the HA tag plus a portion of the 5' end of the avrRpt2 truncation (deletion of amino acids 1 to 79 [
1-79]) (21). The 3' portion of the fusion was amplified by PCR using a 5' primer to the avrRpt2 truncation plus a portion of the 3' end of the HA tag and a 3' primer to avrRpt2. The two PCR products were then mixed and used as a template for the subsequent PCR. The full-length promoter-hopZ(G2A)-HA-avrRpt2(
1-79) cassette was amplified using the same 5' promoter primer and 3' avrRpt2 primer and cloned into pUCP20 as described above. For the promoter-ATG- avrRpt2(
1-79) fusions, the 5' portion of the fusion protein was amplified by PCR using a 5' primer to the hopZ promoter and a 3' primer to the hopZ promoter with a start codon and a portion of the 5' end of avrRpt2(
1-79). The 3' portion of the fusion protein was amplified by PCR using a 5' primer to the avrRpt2 truncation plus a start codon and a portion of the 3' end of the hopZ promoter and a 3' primer to avrRpt2. The two PCR products were then mixed and used as a template for the subsequent PCR. The full-length promoter-ATG-avrRpt2(
1-79) cassette was amplified using the same 5' promoter primer and 3' avrRpt2 primer and cloned into pUCP20 as described above.
To clone into the pBD vector, the hopZ genes with an in-frame HA tag were amplified by PCR using primers to add a unique XhoI site to the 5' end of each gene and a unique SpeI site to the 3' end of the HA tag. The pBD vector (a gift from Jeff Dangl, University of North Carolina, Chapel Hill) was modified from pTA7002 to add an HA tag in the multiple-cloning site as described previously (2, 39).
P. syringae HR, ion leakage, and in planta growth assays.
For infiltration, P. syringae was resuspended to an optical density at 600 nm of 0.1 (
5 x 107 CFU/ml) for HR assays and trypan blue staining, diluted to obtain a concentration of 2 x 107 CFU/ml for ion leakage assays, or diluted to obtain a concentration of 1 x 105 CFU/ml for determination of growth curves. Diluted inocula were infiltrated by hand using a needleless syringe as described previously (29). The HR was scored at 16 to 20 h. For trypan blue staining, leaves were harvested after 17 to 18 h and stained with lactophenol-trypan blue (31) by boiling them for 5 min, followed by a 30-min incubation on the bench. Clearing was performed in choral hydrate overnight, and leaves were stored in 60% glycerol. For ion leakage assays, four disks (1.5 cm2) were harvested, soaked in water for 45 min, and transferred to 6 ml of distilled H2O. Readings were obtained with an Orion 3 Star conductivity meter (Thermo Electron Corporation, Beverly, MA). For growth assays, four disks (1 cm2) were harvested, ground in 10 mM MgCl2, and plated on KB with rifampin and cycloheximide on days 0 and 3 for colony counting. The chaperone schZ3 was also present in all hopZ3 constructs. Arabidopsis plants were grown with 9 h of light (
130 microeinsteins m–2 s–1) and 16 h of darkness at 22°C in Promix soil supplemented with 20:20:20 fertilizer.
P. syringae protein expression. P. syringae cultures were grown overnight in KB with kanamycin and rifampin, pelleted, and washed with minimal medium. Cultures were grown overnight in minimal medium to induce the type III secretion system (24). Then, 1.3 ml of each culture was pelleted and resuspended in 50 µl of 1x sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) loading dye. Samples were boiled for 5 min. For all proteins except HopZ3, 5 µl of protein was separated on 12% SDS-PAGE gels. For HopZ3 (wild type and mutants), 20 µl was loaded. Proteins were transferred to nitrocellulose membranes and detected with HA antibodies (Roche) by chemiluminescence (Amersham Biosciences).
Agrobacterium transient-expression assays and membrane fractionation. Five-milliliter A. tumefaciens GV3-101 cultures were grown overnight at 28°C in Luria-Bertani broth with gentamicin, kanamycin, and rifampin. The following day, the cultures were washed twice in induction medium (50 mM morpholineethanesulfonic acid [MES] [pH 5.6], 0.5% [wt/vol] glucose, 1.7 mM NaH2PO4, 20 mM NH4Cl, 1.2 mM MgSO4, 2 mM KCl, 17 µM FeSO4, 70 µM CaCl2, 200 µM acetosyringone) (59), and 3.2 ml of each culture was inoculated into 50 ml of fresh induction medium and grown overnight. The following day, the cultures were spun down, washed twice in 10 mM MES (pH 5.6) with 200 µM acetosyringone, and infiltrated at an optical density at 600 nm of 0.3 into the undersides of leaves of 5- to 7-week-old N. benthamiana plants. The plants were sprayed with 20 µM dexamethasone (Sigma) 5 to 6 h after inoculation. Then, 1 cm2 of leaf tissue was harvested at 21 to 24 h after dexamethasone induction and frozen in liquid nitrogen. The leaf tissue was ground in a buffer containing 20 mM Tris (pH 8.0), 1 mM EDTA (pH 8.0), 1 mM dithiothreitol, and 0.33 M sucrose. The crude extract was cleared by centrifugation at 5,000 x g for 10 min at 4°C. To separate soluble and membrane proteins, the cleared extract was centrifuged at 20,000 x g for 1 h at 4°C. After SDS-PAGE loading dye was added to equivalent volumes of soluble and membrane fractions and the preparations were boiled for 5 min, 7.5 µl of protein was separated on 12% SDS-PAGE gels, blotted onto nitrocellulose membranes, and detected using HA antibodies (Roche) by chemiluminescence (Amersham Biosciences).
Computer software. The sequence analysis was done with BioEdit 7.0 and Sequencer 4.0. Adobe Photoshop 7.0 was used for all image manipulation. Statview 5.0 was used for all statistical analyses.
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FIG. 1. Characterization of the HR induced by HopZ1a in Arabidopsis. (A) Half-leaves of Arabidopsis plants were infiltrated with 10 mM MgCl2 or with P. syringae pv. tomato DC3000 expressing the empty vector (Ev) or one of the HopZ family members with a C-terminal HA tag under the control of its endogenous promoter. The bacteria (5 x 107 CFU/ml) were syringe infiltrated into the leaves. Photographs were taken 22 h after infiltration. The numbers of leaves showing an HR are indicated to the left of the leaves. HRs are indicated by an asterisk. HopZ1aC/A, C216A mutant; HopZ1bC/A, C212A mutant (the picture was taken in a separate experiment). Scale bars = 1 cm. (B) Immunoblot analysis of HopZ-HA family protein expression in P. syringae pv. tomato DC3000. P. syringae pv. tomato DC3000 (Pto DC3000) carrying an empty vector or one of the indicated HA-tagged HopZ proteins was grown in minimal medium to induce the type III secretion system. Equal amounts of protein were resolved on 12% SDS-PAGE gels, blotted onto nitrocellulose, and probed with HA antibodies. The darkest band in each lane is the band corresponding to the full-length HopZ-HA protein. Other bands are nonspecific or degradation products. The Ponceau red-stained blot was used as a loading control. The HopZ3 lane was loaded with four times as much protein as was in the other lanes, and the additional HopZ3 panel on the right shows an overexposure (10x) of the same blot. The HopZ3 band is indicated by an asterisk. The molecular masses of the proteins are as follows: HopZ1a-HA, 42.1 kDa; HopZ1b-HA, 42.4 kDa; HopZ1c-HA, 30.5 kDa; HopZ2-HA, 41.9 kDa; and HopZ3-HA, 46.9 kDa. C/A, C216A mutant; Wt, wild type; -HA, anti-HA. (C) Trypan blue staining of P. syringae pv. tomato DC3000-infiltrated Arabidopsis leaves. The bacteria (5 x 107 CFU/ml) were syringe infiltrated into the leaves. C/A, C216A mutant of HopZ1a. Scale bar = 1 cm. (D) Electrolyte leakage of Arabidopsis leaf disks after infiltration with P. syringae pv. tomato DC3000 expressing the indicated constructs. The bacteria were syringe infiltrated into the leaves using a suspension containing 2 x 107 CFU/ml. The error bars indicate the standard deviations from four repetitions. C/A, C216A mutant.
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Contribution of the HopZ family to P. syringae growth in Arabidopsis. To examine the contribution of the HopZ family to bacterial growth in Arabidopsis ecotype Col-0, we carried out growth assays with P. syringae pv. tomato DC3000 expressing the five hopZ alleles individually. Bacteria were syringe infiltrated (29) into the leaves of ecotype Col-0 plants, and the bacterial levels were monitored at 1 h (day 0) and 3 days postinfection. The growth of P. syringae pv. tomato DC3000 expressing HopZ1a was reduced more than 100-fold compared to the growth of P. syringae pv. tomato DC3000 harboring the empty vector at 3 days postinfection (Fig. 2A). The reduction in bacterial growth was similar to the reduction in the RPS2-mediated resistance induced by AvrRpt2 (Fig. 2A). Therefore, the HopZ1a-induced HR in Arabidopsis ecotype Col-0 is associated with a decrease in bacterial growth. Like the macroscopic HR, HopZ1a-induced resistance requires the catalytic cysteine since P. syringae pv. tomato DC3000 expressing HopZ1a(C216A) grew as well as P. syringae pv. tomato DC3000 expressing the empty vector (Fig. 2A).
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FIG. 2. Avirulence and virulence functions of the HopZ family in Arabidopsis. (A) P. syringae pv. tomato DC3000 (Pto DC3000) expressing the indicated HopZ-HA family members was syringe infiltrated using a suspension containing 1 x 105 CFU/ml into Arabidopsis ecotype Col-0 leaves, and bacterial counts were determined 1 h postinfection (day 0) and 3 days postinfection (day 3). Z1aC/A, C216A mutant of HopZ1a; Ev, empty vector. (B) P. syringae pv. cilantro 0788-9 (Pci 0788-9) expressing the indicated HopZ-HA family members was syringe infiltrated using a suspension containing 1 x 105 CFU/ml into Arabidopsis ecotype Col-0 leaves, and bacterial counts were determined 1 h postinfection (day 0) and 3 days postinfection (day 3). (C) Bacterial growth of P. syringae pv. cilantro 0788-9 expressing the empty vector, HopZ2-HA (wild type [Wt]), and the HopZ2-HA(C229A) mutant as described above. Asterisks indicate values significantly different from the value for the empty vector control according to Fisher's PLSD test. The error bars indicate 1 standard deviation from the mean. The letters above the bars indicate significance groups.
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HopZ1a-induced HR is not dependent on RPM1, RPS2, RIN4, RPS5, or RPS4. To determine whether the HR induced by HopZ1a is dependent on previously characterized resistance genes or the resistance protein-associated protein RIN4 (RPM1-interacting protein 4) (4, 39), we carried out macroscopic HR assays or growth assays with Arabidopsis plants lacking these genes. The activities of AvrB and AvrRpm1 are recognized by RPM1 (20), while the activity of AvrRpt2 is recognized by RPS2 (6, 42). Arabidopsis rpm1-3 rps2-101C rin4 (5) leaves were infected with P. syringae pv. tomato DC3000 expressing HopZ1a, HopZ1a(C216A), AvrRpt2, or the empty vector pUCP20 and monitored for macroscopic HR-like symptoms. Since AvrRpt2 recognition is dependent on RIN4 and RPS2 in Arabidopsis, the disruption of these genes impaired the HR normally caused by AvrRpt2 (Fig. 3A). HopZ1a still induced an HR in the rpm1-3 rps2-101C rin4 mutant background (Fig. 3A), indicating that it is not recognized by the resistance protein RPM1 or RPS2 or by the RPM1-interacting protein RIN4. Consistent with our previous data, the catalytic cysteine residue in HopZ1a was necessary for the HopZ1a-induced HR (Fig. 3A). We also tested an rps5-2 mutant in which the RPS5 resistance gene required for the recognition of HopAR1 (AvrPphB) is impaired (62). Arabidopsis rps5-2 mutant leaves were infected with P. syringae pv. tomato DC3000 expressing HopZ1a, HopZ1a(C216A), AvrRpt2, or an empty vector and monitored for macroscopic HR-like symptoms. HopZ1a still induced an HR in the rps5-2 mutant, which indicated that RPS5 does not have a role in the HR conferred by HopZ1a (Fig. 3B).
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FIG. 3. HopZ1a-induced HR in Arabidopsis is independent of RPM1, RPS2, RIN4, RPS5, and RPS4. (A) Half-leaves of Arabidopsis rpm1-3 rps2-101C rin4 plants were infiltrated with 10 mM MgCl2 or with P. syringae pv. tomato DC3000 expressing the empty vector, AvrRpt2, or HopZ1a with a C-terminal HA tag under the control of its endogenous promoter. The bacteria (5 x 107 CFU/ml) were syringe infiltrated into the leaves. Photographs were taken 22 h after infiltration. An HR is indicated by an asterisk. Ev, empty vector; Wt, wild type; C216A, C216A mutant. Scale bar = 1 cm. (B) Half-leaves of Arabidopsis rps5-2 plants were infiltrated as described for panel A. Scale bar = 1 cm. (C) P. syringae pv. tomato DC3000 (Pto DC3000) expressing HopZ1a-HA or the empty vector was syringe infiltrated into Arabidopsis ecotype RLD leaves, and bacterial counts were determined 1 h postinfection (day 0) and 3 days postinfection (day 3). The bacteria (1 x 105 CFU/ml) were syringe infiltrated into the leaves. The error bars indicate 1 standard deviation from the mean. The letters above the bars indicate significance groups according to Fisher's PLSD test.
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Members of the HopZ family contain a putative myristoylation site required for membrane localization in planta. Myristoylation is the irreversible attachment of a myristoyl group to the N-terminal glycine residue of proteins that can act as a lipid anchor in biological membranes (8). Several bacterial type III effector proteins contain predicted myristoylation sequences at their N termini (Table 2) (41, 46). AvrB and AvrRpm1 have been demonstrated to be myristoylated in vivo and to require this modification for avirulence functions in planta (46). Putative myristoylation sites have also been found in the HopZ1c and HopZ2 proteins (41, 65). When we analyzed the N-terminal regions of the HopZ proteins, we noticed that the sequence of HopZ1a is nearly identical to that of AvrPto, except for one conservative amino acid difference, and is very similar to those of HopZ1b and HopZ1c (Table 2). HopZ2 is more divergent, although it retains a glycine at the second position. HopZ3 does not appear to have a consensus sequence for myristoylation (data not shown). This suggested that all of the HopZ family members except HopZ3 may be membrane associated in planta.
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TABLE 2. Members of the HopZ family contain an N-myristoylation consensus sequence
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FIG. 4. HopZ1a, HopZ1b, HopZ1c, and HopZ2 possess a predicted myristoylation consensus sequence that is required for membrane localization in N. benthamiana. (A) Membrane fractions from 1-cm2 sectors of N. benthamiana leaves syringe infiltrated with Agrobacterium carrying the indicated constructs in a conditional dexamethasone-inducible expression vector (as described in Materials and Methods). Proteins were resolved on 12% SDS-PAGE gels, blotted onto nitrocellulose, and probed with HA antibodies ( -HA). The predicted molecular masses of the proteins are as follows: HopZ1a-HA, 42.1 kDa; HopZ1b-HA, 42.4 kDa; HopZ1c-HA, 30.5 kDa; and HopZ2-HA, 41.9 kDa. Equivalent proportions of proteins were loaded for the membrane and soluble fractions. Ev, empty vector; GA, G2A mutant; Wt, wild type. (B) Immunoblot analysis of the soluble fraction of the extract used for panel A. Cellular equivalents of the membrane fraction in panel A and the soluble fraction in panel B were loaded (as described in Materials and Methods). Asterisks to the left of the lanes for HopZ1a and HopZ1a(G2A) indicate the band of interest. Ponceau red staining demonstrated that equal amounts of protein were loaded for the empty vector, HopZ1a, HopZ1a(G2A), HopZ1b, HopZ1b(G2A), HopZ2, and HopZ2(G2A) and that five times more protein was loaded for HopZ1c and HopZ1c(G2A). (C) Membrane (M) and soluble (S) fractions for the empty vector and HopZ3. Ponceau red staining demonstrated that equal amounts of protein were loaded for the empty vector and HopZ3. The autoradiograph was overexposed 20 times relative to those in panels A and B. The predicted molecular mass of HopZ3-HA is 46.9 kDa.
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FIG. 5. Myristoylation site of HopZ1a is required for the induction of the HR and contributes to associated defenses. (A) Half-leaves of Arabidopsis ecotype Col-0 plants were mock infiltrated with 10 mM MgCl2 or syringe infiltrated with P. syringae pv. tomato DC3000 carrying the empty vector or a member of the HopZ family with a C-terminal HA tag under the control of its endogenous promoter. The bacteria (5 x 107 CFU/ml) were syringe infiltrated into the leaves. The photographs were taken 22 h after infiltration. Ev, empty vector; Wt, wild type; G2A, G2A mutant. Scale bar = 1 cm. (B) Immunoblot analysis of HopZ1a-HA proteins in P. syringae pv. tomato DC3000. Equal amounts of protein were loaded. The molecular mass of HopZ1a-HA is 42.1 kDa. (C) Trypan blue staining of DC3000-infiltrated Arabidopsis leaves. The bacteria (5 x 107 CFU/ml) were syringe infiltrated into the leaves. Scale bar = 1 cm. (D) Electrolyte leakage after infiltration with the indicated constructs. The bacteria (2 x 107 CFU/ml) were syringe infiltrated into the leaves. The error bars indicate the standard deviations for four repetitions. (E) P. syringae pv. tomato DC3000 carrying the indicated constructs was syringe infiltrated into Arabidopsis ecotype Col-0 leaves, and bacterial counts were determined on days 0 and 3. The bacteria (1 x 105 CFU/ml) were syringe infiltrated into the leaves. The error bars indicate 1 standard deviation from the mean. Fisher's PLSD test was used to assess significance. The letters above the bars indicate significance groups.
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FIG. 6. HopZ2 virulence function in Arabidopsis requires an intact myristoylation site. P. syringae pv. cilantro 0788-9 (Pci 0788-9) carrying the indicated constructs was syringe infiltrated into ecotype Col-0 leaves, and bacterial counts were determined on days 0 and 3. The bacteria (1 x 105 CFU/ml) were syringe infiltrated into the leaves. The error bars indicate 1 standard deviation from the mean. Fisher's PLSD test was used to assess significance. The letters above the bars indicate significance groups. Ev, empty vector; Wt, wild type; C229A, C229A mutant; G2A, G2A mutant.
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5 h postinfection, whereas AvrRpt2 induces an HR
21 h postinfection. The timing of the HopZ1a-induced HR is most similar to the timing of an HR induced by AvrRpt2 occurring at
22 h postinfection. Like AvrRpt2, HopZ1a possesses a conserved catalytic triad found in cysteine proteases (4, 37). The cysteine protease activity of AvrRpt2 has been demonstrated and requires activation by eukaryotic cyclophilin (14). HopZ1a has also been demonstrated to display protease activity in vitro with the use of a modified casein as a generic substrate (37). This activity was dependent on an intact catalytic cysteine residue and was enhanced by the addition of plant extracts to the reaction mixture (37). However, the activity was weak relative to that of the positive control, trypsin. The weak activity could have been due to the requirement for a eukaryotic cofactor, as suggested by the increase observed with plant extracts. Alternatively, we cannot rule out the possibility that members of the HopZ family may possess acetyltransferase activity similar to that of the Yersinia pestis YopJ protein (43, 45). The identification of a specific substrate would undoubtedly confirm the enzymatic activity of the HopZ family. AvrRpt2 displays little or no activity in generic protease assays but cleaves the host protein RIN4 at two specific sequences (12, 16, 30). HopZ1a may have a similar substrate specificity, which awaits the identification of Arabidopsis target proteins. The identification of host substrates of HopZ1a may also reveal the mode of recognition by its cognate resistance protein since it is becoming apparent that resistance proteins can recognize avirulence proteins through the modifications that they induce in their host targets (15, 66, 67). The resistance protein RPS5 recognizes the type III effector HopAR1 (formerly AvrPphB) via its protease activity on the Arabidopsis kinase PBS1 (61). Similarly, the cysteine protease AvrRpt2 degrades its host target protein RIN4, and the disappearance of this protein activates the resistance protein RPS2 (4, 38). The fact that the HopZ1a-induced HR and associated defenses in Arabidopsis also require the catalytic cysteine residue C216 indicates that HopZ1a is also recognized indirectly via its enzymatic activity on a host target (Fig. 1 and 2).
The resistance protein responsible for the recognition of HopZ1a in Arabidopsis remains to be identified. This recognition is independent of RPM1, RPS2, RPS5, or RIN4 since plants lacking these genes still display HopZ1a-induced HR (Fig. 3). Recognition is also independent of RPS4 since HopZ1a restricts bacterial growth in the ecotype RLD background (Fig. 3). Ecotype RLD is a naturally susceptible ecotype which lacks RPS4 resistance to P. syringae pv. tomato DC3000 carrying AvrRps4 (19). Transgenic ecotype RLD expressing the ecotype Col-0 allele of RPS4 is resistant to DC3000 carrying the avrRps4 gene (19). Therefore, HopZ1a is recognized in a RIN4-independent manner by a resistance protein other than RPM1, RPS2, RPS5, or RPS4. We are currently identifying the resistance gene responsible for HopZ1a-induced defense responses.
Numerous type III effector proteins possess an N-terminal myristoylation sequence which contributes to membrane localization inside the host cell (41, 46, 53, 60, 64). Interestingly, all of the HopZ family members except HopZ3 possess a predicted N-terminal myristoylation motif with a glycine at the second amino acid position and a cysteine in the first 5 amino acids (Table 2). In HopAR1, the myristoylation sequence is revealed upon autoproteolytic cleavage (46, 64). However, no internal putative myristoylation sequence could be identified in HopZ3, suggesting that this protein is the only family member that is not myristoylated. In support of this, all of the HopZ family members except HopZ3 were predominantly associated with the membrane fraction in assays of transient expression in N. benthamiana (Fig. 4). Furthermore, the predicted myristoylation site is required for membrane localization since the G2A mutation resulted in localization predominantly to the soluble fraction in these assays (Fig. 4). The predicted myristoylation sequence is also required for HopZ1a-induced HR (Fig. 5). However, HopZ1a-induced resistance is only partially compromised by the G2A mutation. We speculate that in the absence of myristoylation, some HopZ1a protein is recruited to the membrane fraction, possibly by protein interactions, where it can still partially carry out its biochemical function, ultimately resulting in a compromised, but not eliminated, immune response.
We also identified a novel virulence function for HopZ2 (formerly AvrPpiG), which was originally identified in the pea pathogen P. syringae pv. pisi 895A (3). The HopZ2 virulence function is dependent on both an intact catalytic cysteine (C229) and the predicted myristoylation site. We therefore speculate that myristoylated HopZ2 is membrane localized in Arabidopsis, where it acts upon a host protein or proteins, which promotes the virulence of P. syringae. HopZ2 is more similar to the AvrBsT, AvrRxv, and AvrXv4 effectors found in the tomato and pepper pathogen Xanthomonas campestris and to the PopP1 effector found in the bacterial wilt pathogen Ralstonia solanacearum than to the other HopZ proteins (37). AvrRxv and AvrXv4 have been demonstrated to localize to the plant cell cytoplasm, despite possessing putative nuclear localization signals (NLS) (7, 54). AvrBsT also possesses a putative NLS and is predicted to be localized in the nucleus (13). PopP1 does not possess an NLS or a membrane localization sequence and is predicted to localize to the cytosol (32). Therefore, HopZ2 appears to be functionally distinct from these closely related proteins. HopZ2 is more distantly related to XopJ from X. campestris pv. vesicatoria 85-10 (37); XopJ was recently demonstrated to be membrane localized and to possess a myristoylation sequence (65). XopJ can also trigger an HR when it is transiently expressed in N. benthamiana or N. clevelandii (65), but unlike HopZ2, XopJ has not been shown to have a virulence function in plants (47).
Since the membrane localization of HopZ2 does not induce an HR in Arabidopsis, the targeted complex may be distinct from the complex targeted by HopZ1a. Alternatively, the same protein(s) may be targeted by HopZ2 and HopZ1a but differentially modified such that only the complex formed by HopZ1a is recognized by the Arabidopsis resistance protein. An analogous situation has been found for the Arabidopsis protein RIN4, which is differentially modified by at least three distinct type III effector proteins, AvrRpt2, AvrRpm1, and AvrB (4, 38, 39). Determining the host targets of HopZ1a and HopZ2 should help us further understand their avirulence and virulence functions and their effects on host metabolism.
The HopAB family is another evolutionarily diverse and broadly distributed family of P. syringae effectors with three closely related homology groups: HopAB1 (including VirPphA), HopAB2 (including AvrPtoB), and HopAB3 (including homologues of AvrPtoB and HopPmaL) (27, 33, 55). Several groups have studied HopAB homologues to determine their virulence and avirulence functions in tomato (33, 34), soybean (26), snap bean (27), and Arabidopsis (22); however, this extended family has not been studied from an evolutionary perspective, which limits our understanding of the selective pressures giving rise to this diversity. Since the evolutionary context of the HopZ family is well understood, the HopZ type III effectors provide a unique opportunity to assess the evolutionary pressures driving virulence and avirulence and how these forces drive the underlying molecular and cellular mechanisms of pathogen-host interactions. A key test is to see if HopZ1a confers a virulence function on plants lacking the corresponding resistance gene since both AvrRpt2 and AvrRpm1 can enhance bacterial growth in plants lacking their cognate resistance genes RPS2 and RPM1 (10, 21, 51). Furthermore, the identification of Arabidopsis targets of the HopZ family of proteins promises to reveal the link between evolutionary and functional diversification. Overall, our results emphasize the significance of genetic diversity among members of this closely related family of type III effector proteins.
This research was supported by NSERC discovery grants to D.D. and D.S.G., by an NSERC postdoctoral fellowship to W.M., by the Canadian Foundation for Innovation, by a Canada Research Chair in Plant-Microbe Systems Biology (D.D.), by a Canada Research Chair in Comparative Genomics (D.S.G.), and by the Centre for the Analysis of Genome Evolution and Function (D.S.G. and D.D.).
Published ahead of print on 8 February 2008. ![]()
Supplemental material for this article may be found at http://jb.asm.org/. ![]()
D.D. and D.S.G. made equal contributions to this paper. ![]()
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