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Journal of Bacteriology, May 2009, p. 3142-3148, Vol. 191, No. 9
0021-9193/09/$08.00+0 doi:10.1128/JB.01575-08
Copyright © 2009, American Society for Microbiology. All Rights Reserved.

Departamento de Microbiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Morelos, México,1 Centro de Investigaciones en Ciencias Microbiológicas, Benemérita Universidad Autónoma de Puebla, Puebla, México2
Received 5 November 2008/ Accepted 23 February 2009
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The polysaccharide alginate is also a major component of the cyst capsule and is essential for the differentiation process, since mutations in alginate biosynthetic genes abrogate the formation of cysts resistant to desiccation (5, 16). In A. vinelandii ATCC 9046 inactivation of algU, the gene coding for the sigma factor AlgU (
E), impairs alginate synthesis and cyst formation (18), as this sigma factor is required for full expression of the alginate biosynthetic genes algD and algC (8, 15, 18). Besides its role in the expression of alg genes, AlgU has been suggested to have an additional role in encystment (18). A. vinelandii UW136 (3), a derivative of the nonmucoid strain OP, also unable to produce alginate and to form cysts resistant to desiccation, was found to have a natural insertion within algU (15). Complementation of this strain with a wild-type algU gene restored alginate biosynthesis and the ability to produce mature cysts (18).
Other components of the cyst capsule are the lipids alkylresorcinols (ARs) and alkylpyrones (APs). ARs are phenolic lipids common to plants but rare in bacteria. Induction of encystment results in the synthesis of ARs and APs that replace the membrane phospholipids and are components of the exine. 5-n-Heneicosylresorcinol and 5-n-tricosylresorcinol (known as AR1) and their galactoside derivatives (known as AR2), are the main alkylresorcinols synthesized (20). Recently, the gene cluster arsABCD, involved in the synthesis of these compounds, was identified (7). ArsA and ArsD constitute a fatty acid synthase responsible for the synthesis and direct transfer of the C22 to C26 fatty acids that serve as substrates for ArsB and ArsC (17). ArsB and ArsC are type III polyketide synthases which synthesize alkylresorcinols and alkylpyrones, respectively, by two or three extensions of the C22 to C26 fatty acids with malonyl coenzyme A (7). To investigate the role of ARs in encystment, an arsB mutant derived from strain OP (4) was constructed and shown to impair synthesis of alkylresorcinols (7). Electron microscopy of the asrB mutant induced for encystment showed that it was unable to produce cysts. Thus, Funa et al. (7) concluded that phenolic lipids are essential for the formation of mature cysts. However, the OP strain used by these authors is impaired in alginate biosynthesis due to an algU::IS mutation (15) (accession numbers AAF18261 ZP_00415083 and ZP_00415083); therefore, it is expected to be impaired in the formation of mature cysts. In addition, desiccation resistance was not determined for the OP and its arsB mutant derivative, and ARs are presumed to contribute to the desiccation resistance of cysts (22). The aim of this work was to determine the role of these phenolic lipids in the formation and resistance of the cysts.
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TABLE 1. Strains and plasmids used in this work
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Construction of A. vinelandii strain SW136. Strain UW136 (3) is a rifampin-resistant derivative of A. vinelandii OP (4). Both strains are nonmucoid due to the presence of an insertion sequence (IS) within algU (15). To be able to study the encystment phenotype of mutants affected in alkylresorcinol synthesis, we constructed strain SW136, a UW136 derivative carrying a wild-type algU gene, as follows. Plasmid pSMU85 (18), carrying a wild-type algU gene from the mucoid A. vinelandii strain ATCC 9046 (accession number AAF18265), was transformed into strain UW136. A mucoid derivative (strain SW136) generated by a double recombination event was isolated and confirmed by PCR analysis to carry the wild-type algU copy by using the primers 5'-GGACATCATGCTGAAAGTG-3' and 5'-CATGCTCCTCCTCAGCG-3'.
Transposon mutagenesis and identification of mutants affected in AR synthesis.
Mutagenesis of A. vinelandii SW136 was carried out using E. coli S17-1
-pir containing the promoter-probe minitransposon mTn5SSgusA40, as described previously (27). The mini-Tn5 mutant library obtained was stained for alkylresorcinol visualization as follows. A. vinelandii mutants were grown for 5 days on Burk's medium containing 0.2% n-butanol. The petri dishes were then sprayed with a solution of 0.5% Fast Blue B in 5% acetic acid. AR-producing colonies turned dark red after a few minutes of reaction with the staining solution.
Determination of alkylresorcinols. Phenolic lipids were extracted with acetone for 20 min at room temperature in closed tubes. After centrifugation, the acetone extract was removed and a second extraction was done with acetone for 12 h at room temperature. The resulting extracts were mixed and used for the spectrophotometric determination of alkylresorcinols, with the use of Fast Blue B as previously described (26). Orcinol was used as a standard. The protein content of the cells used for AR determinations was quantified by the method of Lowry et al. (14).
Encystment and resistance to desiccation. Cyst formation was induced by transferring washed vegetative cells grown on BS for 24 h to plates with BBOH medium (encystment induction medium) (23). After 5 days of incubation at 30°C, the cells were suspended in Burk's medium without carbon source (Burk's buffer). To disaggregate the cysts, the cell suspensions were dispersed with a sonicator (Virsonic 60) at 4 W (power output). Six pulses (4 s on, 30 s off) were applied. The tubes were kept in ice throughout the treatments. To determine the effect of sonication on cyst viability, treated and untreated controls of the parental strain (SW136) were included. Desiccation resistance assays were carried out as described previously (5). Approximately 106 CFU of each strain were applied to Millipore 0.2-mm-pore-size membranes and placed in sterile tubes. The cells on the filters were desiccated at 30°C for the indicated times. Surviving cells, quantified by viable count, were considered mature cysts.
Light and electron microscopy. An optical microscope (Olympus EX41) was used to observe vegetative cells and cysts of A. vinelandii. To differentiate the cysts, Fast Blue B staining was used to color the alkylresorcinol lipids in the layers of cysts. For this staining the cells were grown for 5 days in the appropriate medium, and samples of the culture were placed on a microscope slide and stained with a solution of 0.5% Fast Blue B in 5% acetic acid for 10 min. Electron microscopy was carried out using cells grown on BBOH for 5 days, as previously reported (16).
Insertional inactivation of the ars genes. arsA and arsB mutants were obtained by gene disruption with antibiotic resistance cassettes. DNA fragments containing the target genes were obtained by PCR, using DNA from A. vinelandii UW136. Primers arsA6 (5'-GCCAAAGCAAATCTAAAGG-3') and arsA5 (5'-CAATCGCAATCCTGGAGTC-3') were used for the amplification of a fragment of arsA, and primers arBC1 (5'-CACGGTTGAGGTTTTTCC-3') and arBC2 (5'-GGACTCCACCTCGTAGAC-3') were used for the amplification of arsB. The resulting fragments were cloned in the pMOSBlue vector. The arsA and arsB genes were disrupted by insertion of a gentamicin cassette (Gmr) from plasmid pBSL141 (1, 6). Restriction analysis was used to determine the orientation of the Gmr resistance cassette. The cassette inserted in the same orientation as the inactivated gene (insertion allowing transcription of downstream genes) was selected for arsB::Gmr. For the arsA::Gmr insertion, both orientations were used. The physical map depicting the plasmids with the corresponding DNA fragments contained and the location of the restriction sites used for the insertion of the antibiotic cassette is shown in Fig. 1. The corresponding arsA and arsB mutants of A. vinelandii (Table 1) were obtained by gene replacement, transforming strain SW136 with plasmids pSMarsA-Gm, pSMarsA-GmP, and pYRC1n (Fig. 1) and selecting for transformants resistant to 0.5 µg/ml gentamicin. The double-crossover events were confirmed by PCR analysis.
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FIG. 1. Physical map of the A. vinelandii ars chromosomal region. The fragments contained in the corresponding plasmids are illustrated. The arrows represent genes. Restriction sites relevant for gene disruption are shown. Triangles represent insertions of either antibiotic resistance cassettes or the mTn5SSgusA40 transposon.
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CT method reported by Livak and Shmittgen (13). Reproducibility of the whole procedure was determined by performing cDNA synthesis and real-time PCR experiments from two separate RNAs extracted for each strain. Similar results were obtained for the transcription of all measured genes in the repetitions and with the two different internal controls (gyrA and rplI) used for the normalization. |
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TABLE 2. Characteristics and desiccation resistance of cysts of different A. vinelandii strains
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FIG. 2. Staining of alkylresorcinols produced by A. vinelandii. (A) Staining of A. vinelandii mutant OV8 (1), SW136 (2), and mutant OV11 (3), grown on petri dishes containing Burk-sucrose medium (vegetative growth) or Burk-butanol medium (encystment induction). (B) Light microscopy (bright field) of Fast Blue B-stained vegetative cells and cysts of A. vinelandii SW136 and OV11. In all cases the cells were grown for 5 days.
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PstI DNA fragments containing the mini-Tn5 mutations from strains OV8 and OV11 were cloned into plasmid pBluescript KS (Stratagene). The resultant plasmids, pOV8 and pOV11, were used to determine the location of the mini-Tn5 by sequencing across the transposon insertion junction. In strains OV8 and OV11, the transposon was found to lie within the arsA gene (Fig. 1), which codes for a type I fatty acid synthase and heads the arsABCD putative operon identified by Funa et al. (7). Analysis of the GC content of the arsA sequence and its upstream sequence using FramePlot (10) suggested the start codon is probably 246 bp upstream from the one considered in the annotation (accession number ZP_00418324; http://www.jgi.doe.gov). In the OV8 strain the mini-Tn5 is inserted 3,017 nucleotides downstream of the putative start codon, whereas in strain OV11 the mini-Tn5 was inserted after nucleotide 4906.
Polarity of the asrA::Tn5 mutation.
The arsABCD genes are likely to constitute an operon, since the pair arsB and asrC and the pair arsC and arsD overlap by 4 nucleotides in each case. In addition, no promoter consensus sequences were identified in the 83-nucleotide intergenic arsA-arsB sequence (SoftBerry BPROM program; http://linux1.softberry.com/berry.phtml). Because a mutation in arsB was shown to impair ARs synthesis (7), the question of whether the inability of the OV11 and OV8 mutants to produce ARs was due to polarity of the arsA::Tn5 mutations on arsB was raised. In A. vinelandii, the insertion of the
-Km cassette from plasmid pHP45
-Km (6) into a gene in the same direction of its transcription produces mutations allowing transcription of the downstream genes in the same operon (16). Strains SW-A and SW-AP, which contain an asrA::
-Gm insertion with the cassette oriented in the same or in the opposite direction of arsA, respectively, were constructed as described in Materials and Methods. Both mutants were impaired in ARs synthesis (Fig. 3A). The effects of these insertions, and of the mini-Tn5 insertion of OV11, on the expression of the genes downstream were confirmed by determining the relative content of arsB mRNA with respect to the parental strain SW136 by real-time reverse transcription-PCR. As shown in Fig. 3B, the insertions in SW-AP and OV8 negatively affected arsB expression. However, the arsB mRNA level in strain SW-A was even higher than that of the wild-type strain. These data confirmed that at least arsAB constitutes an operon and that the protein encoded by arsA is essential for the synthesis of alkylresorcinols.
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FIG. 3. Effects of different arsA gene insertions on alkylresocinol synthesis and on the expression of arsB. (A) Alkylresorcinol staining of SW136 and different asrA mutants. The cells were induced to encyst on Burk-butanol medium for 5 days. (B) Effects of different arsA insertions on the expression of arsB, measured by real-time reverse transcription-PCR. The levels of the arsB transcripts were measured under encystment-inducing conditions and were normalized according to the level of the gyrA mRNA. The data are presented as fold changes of mRNA levels of OV11, SW-A, and SW-AP mutant strains relative to those of the parental strain (SW136). These data represent the means of triplicates, and the error bars represent the standard deviations.
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FIG. 4. Expression of arsA, AR synthesis, and encystment in two different media, Burk-sucrose medium (vegetative growth; open symbols) or Burk-butanol (encystment induction medium; closed symbols). (A) β-Glucoronidase activity of strain OV11 containing an arsA::Tn5-gusA reporter fusion. (B) Accumulation of alkylresorcinols over time in A. vinelandii SW136. (C) Percentages of encystment of strains SW136 and OV11, measured as desiccation resistance for 5 days. The inocula were incubated for 24 h on liquid Burk-sucrose, washed with Burk's medium with no carbon source, and transferred to plates with the corresponding medium (at time zero). These data are the means of triplicates, and the error bars represent the standard deviations. One unit of β-glucoronidase activity corresponds to 1 nmol of substrate 5-bromo-4-chloro-3-indolyl-β-D-glucuronic acid hydrolyzed per min per mg of protein.
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FIG. 5. Electron micrographs of A. vinelandii cysts of strains SW136 and OV11 (algU+ arsA mutant) 5 days after induction on Burk-butanol medium.
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The expression of the arsA gene is cyst specific, in accordance with the synthesis of ARs. The amount of arsA mRNA is low in BS cultures, where most cells are vegetative, and it is slightly increased in aging cultures, where a low percentage of cysts are formed (0.001%). In BBOH medium, a condition promoting a higher encystment percentage (5%), its transcription was induced 200-fold. Thus, AR synthesis is controlled at the transcriptional level.
Electron microscopy of the arsB mutant induced to encyst, reported by Funa et al. (7), showed that the lack of ARs severely impaired exine formation. Thus, those authors concluded that the phenolic lipid synthesis is essential for cyst formation in A. vinelandii. However, inactivation of arsB was carried out in the nonmucoid strain OP, also named UW (4), which is unable to produce alginate due to an insertion element present in the algU gene (15) (accession numbers AAF18261 ZP_00415083 and ZP_00415083). Electron microscopy of the arsA mutants induced to differentiate revealed that they formed cysts with a disorganized exine, in agreement with previous reports showing ARs are components of the exine layer (21). This altered morphology of the capsule shows that the ARs play a structural role in the cysts. The agglutination phenotype observed in the arsA mutants could be related to their altered exine structure, suggesting that the presence of ARs in the exine contributes to the segregation of the cysts formed during the differentiation process. The replacement of phospholipids by alkylresorcinols in the membrane of the cysts has been considered to contribute to the desiccation resistance of these cells (7, 22). However, our results show that, under the conditions tested, ARs are not essential for the cysts to resist desiccation, since the cysts of the arsA mutants were able to survive desiccation similar to the SW136 strain (Table 2). Thus, the results show that although ARs play a structural role in the capsule of the mature cyst, they are not essential for cyst formation or for desiccation resistance. Differences between the arsB mutant phenotype reported by Funa et al. (7) and the ars mutants constructed in this study are probably due to the inability of strain OP, the one considered by those authors as wild type, to produce alginate as a consequence of the insertion within its algU gene. Here we have shown that strain OP is unable to form genuine mature cysts resistant to desiccation, in accordance with its lack of the AlgU sigma factor. The severe effect on survival to dryness observed for this strain or the nonmucoid strain UW136 shows that alginate is much more important than ARs for the cysts to withstand desiccation.
Formation of fragile cyst-like structures in the nonmucoid OP strain have been reported (19). However, these structures were reported to have a distinct exine layer composed of membrane-like plates which were probably composed of ARs and APs. The impairment in AR synthesis, together with their lack of alginate, could explain the severely impaired exine observed by Funa et al. (7) in the cyst-like cells of the arsB mutant.
In summary, we have demonstrated here that AR lipids are not essential for either cyst formation or desiccation resistance.
We thank Josefina Guzmán for technical support.
Published ahead of print on 6 March 2009. ![]()
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