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Journal of Bacteriology, May 2009, p. 3149-3161, Vol. 191, No. 9
0021-9193/09/$08.00+0 doi:10.1128/JB.01701-08
Copyright © 2009, American Society for Microbiology. All Rights Reserved.
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Dept. of Microbiology and Immunology, University of Michigan Medical School, 1150 West Medical Center Drive, Ann Arbor, Michigan 48109
Received 5 December 2008/ Accepted 12 February 2009
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The T2S apparatus is modeled as an envelope-spanning complex with subcomplexes in the inner and outer membranes (see Fig. S1 in the supplemental material). The precise stoichiometry and juxtaposition of the Eps proteins are not known, but accumulating biochemical, genetic, and molecular studies continue to refine our understanding of complex assembly and function (for a review, see reference 25). A trimolecular complex consisting of cytoplasmic protein EpsE and inner membrane proteins EpsL and EpsM has been identified. EpsL and EpsM have been shown to coimmunoprecipitate and participate in mutual stabilization interactions in vivo by protecting each other from proteolysis (34, 41, 43, 48). Homologs of inner membrane protein EpsC have been implicated in interactions with the aforementioned inner membrane subcomplex (20, 29, 57), as well as homologs of outer membrane protein EpsD, which form oligomeric rings through which the secreted substrates, it is hypothesized, exit the cell (1, 10, 36, 38). More specifically, EpsC homologs in Pseudomonas aeruginosa and Klebsiella oxytoca are sensitive to proteolysis or unable to oligomerize in the absence of EpsD homologs (2, 40); however, direct interactions between these two proteins in their full-length forms have not been shown by coimmunoprecipitation or copurification. Although yeast two-hybrid analysis of the periplasmic domains of the Erwinia chrysanthemi EpsC and EpsD homologs also did not reveal interaction (15), recently it was shown that periplasmic subdomains of EpsC and EpsD homologs of Vibrio vulnificus copurified (28). It seems likely that EpsC, having interactions with both inner and outer membrane subcomplexes, plays a crucial role in complex function by connecting the inner membrane components to the outer membrane EpsD pore. Furthermore, it has been speculated that EpsC homologs impart specificity to the various T2S systems by directly interacting with proteins to be secreted (3).
We have taken a cell biology approach to characterizing Eps protein interactions, observing the dynamics of green fluorescent protein (GFP)-tagged components of the Eps complex in live cells by fluorescence microscopy. This method permits study of Eps protein assembly in the context of the complete apparatus, situated in both membranes, without the disruptive procedures required for many in vitro molecular and biochemical analyses of protein-protein interactions. Here we present data illustrating the importance of expressing GFP fusions for localization studies with all other interacting components, preserving wild-type stoichiometry and expression levels. In particular, we note that GFP-EpsM does not appear to be focused at the polar membrane as previously described (53), when expressed in balance with its interacting proteins. Chromosomal replacement of epsM and epsC with gfp-tagged versions instead reveals a more distributed pattern, with punctate fluorescent foci along the full length of the cell. We have exploited these chromosomal gfp-eps strains to further dissect the interactions and requirements for localization of EpsC and EpsM by systematically deleting other eps genes in the operon.
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TABLE 1. Strains and plasmids
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TABLE 2. Primers used for plasmid constructions
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The pMMB-based EpsC plasmid, pEpsC, was created by cloning the epsC-containing BamHI-PstI fragment from a pBAD33-EpsC clone, which was generated from PCR amplification from Vibrio cholerae strain TRH7000 with the primer pair epsC02/epsC03. The plasmid mCherry-EpsCD, which encodes an in-frame fusion of the red fluorescent protein mCherry with EpsC, was first constructed by PCR amplification of the gene encoding mCherry from pKS mCherry using primers mcherry-up and mcherry-dn. The mCherry PCR product was cloned into pCRScript SK+ and then pMMB67, resulting in pmCherry. pmCherry-EpsCD was then formed by ligating a fragment containing epsCD from pEpsCD into pmCherry using the restriction enzymes BamHI and XbaI.
pVC1200 was created by PCR amplification of the native VC1200 gene directly from N16961 chromosomal DNA and cloning into low-copy-vector pMMB66 using the primer pairs and restriction sites indicated in Table 1. All other plasmids for complementation of the various deletion strains were constructed by PCR amplification of the native genes directly from TRH7000 chromosomal DNA and cloning into low-copy-vector pMMB66 or pMMB67 using the primer pairs and restriction sites indicated in Table 1. pGFP-EpsC and pGFP-EpsCD were constructed by ligating epsC and epsC-epsD, amplified by primers epsC01/epsC02 and epsC01/epsD01, respectively, in frame into pGFP (53).
Creation of gfp-epsC and gfp-epsM strains. For replacement of epsC and epsM on the chromosome with gfp-tagged versions of the genes, suicide vectors containing approximately 1 kb of homologous sequence upstream and downstream of the gfp insertion were constructed. Overlapping primers at the junctions between the preceding sequences and gfp were designed to retain the native ribosome binding sites of each eps gene for expression of the fusion. For the chromosomal gfp-epsC strain, the upstream homologous region was amplified from TRH7000 chromosomal DNA, using primers gfpC-ko1 and gfpCchr1. The gfp-epsC gene fusion plus the first 83 nucleotides of epsD was amplified from the pGFP-EpsCD plasmid using gfpCchr2 and gfpCchr3 primers. The products from both PCRs were gel purified, combined, and together used as a template for a third PCR using primers gfpC-ko1 and gfpCchr3, taking advantage of the overlapping sequences at the eps promoter-gfp junction engineered with primers gfpCchr1 and gfpCchr2. This final 2.8-kb PCR product, containing gfp-epsC with 1 kb of homologous sequence up and downstream of the gfp gene, was gel purified, cloned into PCRScript SK+ for further amplification, and then ligated into pCVD442.
A similar approach was taken for construction of the gfp-epsM suicide vector. First, primers epsM28 and epsN03 were used to amplify a fragment from TRH7000 chromosomal DNA containing partial sequences of epsM and epsN. This fragment was cloned into pGFP-EpsM with naturally occurring BamHI and PstI to extend the downstream sequence a total of 1 kb past the gfp gene. This new pGFP-EpsMN' plasmid was then used as a template for amplification of gfp-epsM, with a total of
1 kb of homologous sequence downstream of the end of gfp, using primers gfpMchr2 and epsN04. The 1 kb upstream of epsM was amplified from the TRH7000 chromosome using primers epsL21 and epsMchr1. These two PCR products were used as a template for another PCR using primers epsL21 and epsN04. This product containing gfp-epsM, with 1 kb of homologous sequence up- and downstream of the gfp gene, was gel purified, cloned into PCRScript SK+ for further amplification, and then ligated into pCVD442.
To construct PBAD::eps gfp-epsC, a suicide vector containing approximately 1 kb of homologous sequence upstream and downstream of the gfp insertion was constructed from the V. cholerae strain PBAD::eps, which contains the entire eps operon under the control of the arabinose-inducible pBAD promoter (55). The upstream homologous region was amplified from PBAD::eps using primers PBAD::mg-up and PBAD::gfpepsC overlap reverse. The gfp-epsC gene fusion plus a portion of epsD was amplified from the pGFP-EpsCD plasmid using PBAD::gfpepsC overlap and epsC-mg-down primers. The products from both PCRs were used as a template for a third PCR using primers PBAD::mg-up and epsC-mg-down. This final PCR product was gel purified, cloned into pCRScript SK+ for further amplification, and then ligated into pCVD442.
The suicide vectors were propagated in Escherichia coli strain SY327
pir and conjugated into TRH7000 or PBAD::eps with the assistance of MM294/pRK2013. Carbenicillin-resistant transconjugants resulting from integration of the suicide vectors onto the chromosome were isolated as described previously (55). Colonies were screened by PCR for the replacement of native epsC or epsM with gfp-tagged versions.
To construct PBAD::eps mcherry-epsC gfp-epsM, a suicide vector containing approximately 1 kb of homologous sequence upstream and downstream of the site of the mcherry insertion was constructed from PBAD::eps. The upstream homologous region was amplified from PBAD::eps using primers PBAD::mg-up and PBAD-mcherry overlap reverse. The mcherry-epsC gene fusion plus a portion of epsD was amplified from the pmCherry-EpsCD plasmid using PBAD-mcherry overlap and epsC-mg-down primers. The products from both PCRs were used as a template for a third PCR using primers PBAD::mg-up and epsC-mg-down. This final PCR product was cloned into PCRScript SK+ for further amplification and then ligated into pCVD442. It was then introduced into the PBAD::eps gfp-epsM strain by conjugation. Colonies were screened by PCR for the replacement of native epsC with the mcherry-tagged version.
Construction of deletion strains.
To attain the gfp-epsC epsM mutant, the suicide vector used to construct the gfp-epsC strain was introduced into previously described transposon mutant PU3, which contains a Tn5 disruption of epsM (39), and replacement of native epsC was performed as described in the previous section. The
epsC,
epsD, and
epsL strains were constructed as described previously (55) using the primers indicated in Table 1.
The
epsG strain was generated similarly, replacing epsG with the cat gene, conferring chloramphenicol resistance. The disruption construct was generated by first amplifying 1 kb upstream and downstream of epsG in TRH7000 and the cat gene from pBAD33 using the primers indicated in Table 2. All three fragments were cloned stepwise into pK18mobsacB (51) using the restriction sites listed in Table 2 and conjugated into TRH7000. Isolates that were kanamycin sensitive, chloramphenicol resistant, and negative for secretion were further analyzed by PCR and protease secretion assays.
Detection of secreted protease activity.
Activity of secreted proteases in culture supernatants from overnight cultures grown in LB was detected as described previously using the substrate N-tert-butoxy-carbonyl-Gln-Ala-Arg-7-amido-4-methyl-coumarin (Sigma) (26, 55). Upon proteolytic cleavage of the substrate, fluorescence was measured using the excitation and emission wavelengths 385 nm and 440 nm, respectively. For determination of activity of VC1200 protease following overexpression in mid-log phase, strains containing plasmid pVC1200 were grown in M9 medium containing 0.4% Casamino Acids, 0.2% glycerol, and 100 µg/ml thymine and induced with 100 µM IPTG (isopropyl-β-D-thiogalactopyranoside) for 3 h prior to analysis. Emission rates were normalized to a culture optical density at 600 nm (OD600) of 1.0 for comparison and presented as the change in fluorescence units (
FU)/min/OD600.
Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and immunoblotting procedures. Frozen cell pellets were resuspended in loading buffer containing 50 mM dithiothreitol, boiled for 5 min, and the equivalent of 10 µl at an OD600 of 2.0 was loaded onto NuPAGE 4 to 12% Bis-Tris gradient gels and immunoblotted as described previously (26, 55).
Microscopy. Cultures of V. cholerae were grown overnight at 37°C in M9 medium containing 0.4% Casamino Acids, either 0.4% glucose or 0.2% glycerol, and 100 µg/ml thymine; diluted 1:50 into fresh medium; and grown to mid-log phase before observation, unless otherwise noted. Plasmids were maintained with 50 and 200 µg/ml carbenicillin in log-phase and overnight cultures, respectively. Plasmid expression was induced with IPTG as described above. For fluorescence microscopy of live cells, cultures were mounted on 1.5% low-melt-agarose pads prepared with M9 glucose medium supplemented with 50 µg/ml carbenicillin and IPTG where appropriate. All microscopy was performed with a Nikon Eclipse 90i fluorescence microscope equipped with a Nikon Plan Apo VC 100x (1.4 numerical aperture) oil immersion objective and a CoolSNAPHQ2 digital camera. A GFP HC HiSN zero shift filter cube, with a 450- to 490-nm excitation filter and a 500- to 550-nm barrier filter, was used for visualizing GFP fluorescence and Alexa Fluor 488 F(ab')2 goat anti-rabbit immunoglobulin G (IgG) staining for immunofluorescence. For visualization of mCherry fluorescence, a 530- to 560-nm excitation filter and a 590- to 650-nm barrier filter were used. Captured images were analyzed with NIS-Elements imaging software (Nikon). For quantitation of fluorescent foci, an average of 200 cells from three separate experiments was reported. For PBAD::eps mcherry-epsC gfp-epsM colocalization, an average of 20 cells from three separate experiments (totaling 600 foci) was counted. For presentation, image input levels were adjusted with Adobe PhotoShop CS2 to compensate for variations in expression levels in which the fusions were overexpressed via IPTG induction or upregulated due to increased expression from the eps promoter (see Fig. 1, 6, and 8).
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FIG. 1. Distribution of GFP chimeras varies with expression level and context. Plasmid-borne GFP-EpsM in live cells of V. cholerae epsM mutant PU3 was polarly localized when overexpressed with 10 µM IPTG (A) but circumferentially distributed when not induced (B). Both patterns differed from that of chromosomally expressed GFP-EpsM, balanced with the other Eps proteins, which formed fluorescent foci along the cell membranes (C). (D) GFP-EpsC, expressed from the chromosome, similarly displayed fluorescent foci along the full lengths of the cells. (E and F) Both GFP-EpsM and GFP-EpsC fluorescent foci dissipated upon coexpression of IPTG-induced, plasmid-encoded native EpsM and EpsC, respectively.
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FIG. 6. Differential localization of GFP-EpsC in the absence of EpsD, EpsL and EpsM. Localization of chromosomally expressed GFP-EpsC was examined in epsD (B and F), epsL (C and G), and epsM mutant (D and H) backgrounds in log- and stationary-phase (st) cultures and compared with its localization in an otherwise wild-type background (A and E) by fluorescence microscopy. GFP-EpsC displayed a continuous membrane localization in the gfp-epsC epsD strain (B) compared to the otherwise wild-type background (A). Punctate fluorescence was restored when the gfp-epsC epsD strain was complemented with the pEpsD plasmid in the presence of 10 µM IPTG (J). Both the gfp-epsC epsL strain (C) and gfp-epsC epsM mutant (D) retained punctate fluorescence, with subtle accumulation at the polar membrane. In stationary-phase cultures, this phenotype appeared to be magnified, as there is a distinct accumulation at the poles in both the gfp-epsC epsL strain (G) and gfp-epsC epsM mutant (H). Introduction of the pEpsL and pEpsM plasmids to the epsC epsL strain (K) and gfp-epsC epsM mutant (L), respectively, restored the patterns to that of the wild-type strain containing a vector control in the stationary-phase cultures (I).
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FIG. 8. Fluorescence microscopy studies of gfp-epsM deletion strains. Chromosomally expressed GFP-EpsM localization was examined by fluorescence microscopy in live cells of wild-type (wt) (A), epsC (B), epsD (C), and epsL (D) backgrounds. Fluorescent GFP-EpsM foci, not apparent in the mutant backgrounds, were restored by complementation with plasmids expressing the missing proteins EpsC (F), EpsD (G) and EpsL (H) and compared with the foci present in the gfp-epsM strain containing a vector control only (E). Complementation with pEpsD in the gfp-epsM epsD strain required the addition of 10 µM IPTG.
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Effect of MreB inhibitor A22 on GFP-EpsC fluorescent foci and toxin secretion. Cultures of the gfp-epsC strain containing pMMB68, which expresses EtxB, the B subunit of the E. coli heat-labile enterotoxin, from an IPTG-inducible promoter, were grown overnight in M9 growth medium containing 200 µg/ml carbenicillin. Overnight cultures were diluted 1:100 and grown with 50 µg/ml carbenicillin and 100 µM IPTG until the OD600 was 0.4, and then A22 (Calbiochem) was added to the culture at a final concentration of 10 µg/ml. Samples for Western blot analysis and microscopy were collected 30, 60, and 120 min after addition of A22. Microscopy samples were mounted on slides containing 1.5% low-melt agarose prepared with M9 glucose medium containing 10 µg/ml A22, where appropriate. Supernatants containing secreted EtxB were separated from cells by centrifugation at 16,000 x g. SDS loading buffer without dithiothreitol was added, and supernatant and pellet samples were boiled for 5 min and analyzed by SDS-PAGE and Western blotting with monoclonal anti-EtxB antibody 118-8 as described previously (55).
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attachment site of the E. coli chromosome and induced with 10 µM IPTG (4). These data suggest that the polarity of the GFP-EpsM fusion previously observed likely does not reflect the distribution of the native EpsM protein under wild-type expression conditions and may instead be due to overexpression. Creation of V. cholerae strains with chromosomally expressed GFP-EpsM and GFP-EpsC fusions. It is unclear from the localization studies whether the variable localization of plasmid-borne GFP-EpsM is due to the increased expression level or more specifically, the overproduction of the GFP fusion without concomitant overproduction of its interaction partners in the Eps complex. To begin to address this, we replaced chromosomal copies of epsM and epsC in V. cholerae with gfp-tagged copies of each gene, such that they would be expressed under the control of the eps promoter, translated from their respective ribosome binding sites, and produced in conjunction with the full complement of eps gene products. GFP-EpsC was detected at a level comparable to that of the wild-type protein, and while a significant amount of full-length GFP-EpsM was detected, a degradation product was also observed (Fig. 2A and D).
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FIG. 2. Western blot analyses of gfp-epsC and gfp-epsM deletion strains. Cell extracts of log-phase and stationary-phase cultures from the wild-type (wt), gfp-epsC, and epsD ( D), epsL ( L), and epsM::Tn5 (M–) strains were separated by SDS-PAGE and analyzed by Western blotting with detection by anti-EpsC (A), anti-EpsL (B), and anti-EpsM (C) antisera. (D) Log-phase culture samples of the wt, gfp-epsM, and epsC ( C), epsD ( D), and epsL ( L) strains were immunoblotted with anti-EpsM antisera. Molecular weight markers (in thousands) for all blots are indicated to the left, and the positions of the native proteins and GFP fusions are indicated with black and white triangles, respectively. Full-length GFP-EpsM (white triangle) (D) is partially obscured by a cross-reactive band also present in the wild-type strain. A degradation product of the GFP-EpsM fusion is indicated with a gray triangle (D).
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TABLE 3. Protease secretion assays
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Both gfp fusion strains displayed a pattern distinctly different than that of plasmid-borne GFP-EpsM, confirming that the context of expression of these fusion proteins has a profound effect on intracellular localization. Stoichiometric expression of the GFP fusions with their interacting proteins appears to be critical for determining their spatial distribution by fluorescence microscopy. To assess if the fluorescent foci observed were a result of incorporation of the GFP fusions into T2S complexes, plasmids expressing native EpsM and EpsC were introduced into the gfp-epsM and gfp-epsC strains, respectively, and induced with 50 µM IPTG. The patterns of punctate fluorescence dissipated in the gfp-epsM and gfp-epsC strains upon coexpression of the corresponding native proteins (Fig. 1E and F). The fluorescent signal of GFP-EpsM and GFP-EpsC was dispersed in the membrane and cytoplasm, and a fraction of the fusion proteins were likely subjected to proteolysis, as their stabilizing protein partners within the T2S complex became limited under these conditions (not shown). Taken together, the results from these coexpression studies imply that the GFP fusion proteins were outcompeted and replaced by the native proteins and suggest that the fluorescent foci may represent assembled T2S complexes. Alternatively, the fluorescent foci may represent GFP fusion aggregates into which native Eps proteins insert when overexpressed, thereby diluting the fluorescence signal. Although a possibility, this latter scenario is less likely, as the fusion proteins are functional and support secretion.
To further verify that the stoichiometric ratio of GFP chimeras and their interaction partners is critical for observing valid localization patterns and that this may be more important than the absolute level of GFP fusion production, the chimeric genes gfp-epsC and gfp-epsM were introduced into the PBAD::eps strain (55). In these strains the entire eps operon, including the gfp chimeras, is under the control of the arabinose-inducible pBAD promoter. Upon addition of arabinose, not only is the GFP fusion protein induced and expressed at higher levels than those from the native eps promoter, but so are all other Eps proteins, thereby maintaining the balance of Eps components in the cell. As seen in Fig. 3, although induction with 0.01% arabinose resulted in an increase in the number and brightness of fluorescent foci per cell, the patterns of fluorescence observed in both PBAD::eps gfp-epsC and PBAD::eps gfp-epsM were very similar to those seen when the fusion proteins were expressed from the native eps promoter (compare Fig. 3A and D to B and E). Without addition of arabinose, no fluorescent foci were observed (Fig. 3C and F), and protease secretion was not detected.
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FIG. 3. Simultaneous overexpression of the entire eps operon maintains the punctate distribution of GFP chimeras. GFP-EpsM (A) and GFP-EpsC (D) expressed from the native V. cholerae promoter form fluorescent foci. The intensity and number of GFP-labeled foci were increased in the PBAD::eps gfp-epsM (B) and PBAD::eps gfp-epsC (E) strains when induced with 0.01% arabinose. Without the additon of arabinose, no fluorescent foci were observed with either PBAD::eps gfp-epsM (C) or PBAD::eps gfp-epsC (F). All images are shown at the same exposure level to facilitate comparison of expression levels.
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FIG. 4. Number of fluorescent foci correlates with extracellular protease activity. V. cholerae gfp-epsC and PBAD::eps gfp-epsC cells producing the type II-dependent protease VC1200 were supplemented with IPTG at a final concentration of 100 µM and grown to mid-log stage. In the case of PBAD::eps gfp-epsC (pVC1200), 0.001% or 0.01% arabinose was added to the cultures. The GFP-EpsC-expressing cells were analyzed by fluorescence microscopy, and for each expression condition, the number of fluorescent foci in 200 cells was scored. Protease activity in mid-log culture supernatants was assayed by measuring methylcoumarin fluorescence generated from Boc-Gln-Ala-Arg-7-amido-4-methylcoumarin hydrolysis, and rates were normalized to OD600. The average of at least three experiments is presented ± the standard error of the mean.
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Native EpsG is localized around the cell periphery in a pattern similar to that of chromosomally expressed GFP-EpsC and GFP-EpsM.
To confirm that the fluorescence patterns observed with the chromosomal gfp fusion strains represent the distribution of native Eps proteins and were not artifacts of GFP fusion to the proteins, we examined the localization of the Eps complex in wild-type V. cholerae cells by immunofluorescence. Unfortunately, there was no signal above background noise apparent with anti-EpsC antibodies, likely due to low antibody recognition of the native protein and/or a relatively low quantity of protein in the cell (data not shown). We were able, however, to determine the spatial distribution of native EpsG, the most abundant protein of the T2S complex (37, 49). In these experiments, we consistently observed bright fluorescent foci distributed along the full length of the bacterial cell (Fig. 5A). No fluorescence above background was observed in the
epsG mutant, except for occasional dots (Fig. 5C). The fluorescence obtained with Alexa Fluor 488 antibody that is shown in panels B and D is likely to only be autofluorescence, as fixed cells with no antibody incubation exhibited the same background fluorescence (not shown). The localization with the anti-EpsG antibodies mirrors what was observed with the chromosomally expressed GFP-EpsM and GFP-EpsC fusions, once again suggesting distinctly punctate localization for the Eps complex throughout the cell envelope.
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FIG. 5. Localization of native EpsG by immunofluorescence. Following fixation and treatment with lysozyme and EDTA, V. cholerae TRH7000 wild-type (wt) (A) and epsG mutant cells (C) were incubated with anti-EpsG and Alexa-fluor 488-conjugated goat anti-rabbit IgG and visualized by fluorescence microscopy as described in Materials and Methods. (B and D) Wild-type and epsG mutant cells incubated with Alexa Fluor 488-conjugated IgG only.
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Characterization of in-frame gene deletions in the gfp fusion strains.
The gfp-epsC and gfp-epsM strains offer the unique opportunity to observe the dynamics of these fusion proteins in the context of the otherwise wild-type cell, presenting a powerful tool for exploring protein-protein interactions and determining what is required for their spatial distribution. To begin to delineate the roles of other Eps proteins in the establishment and maintenance of the GFP-EpsC and GFP-EpsM foci, we made a series of gene replacements in the gfp-epsC and gfp-epsM strains. For additional controls, we introduced the same mutations in gfp-free wild-type V. cholerae TRH7000 in parallel. Proper in-frame replacement of each gene with a gene cassette conferring antibiotic resistance was confirmed by PCR and sequencing, and expression of the other Eps proteins verified by Western blotting (not shown). We noted that levels of GFP-EpsC, EpsL, and EpsM increased in the gfp-epsC
epsD strain, though not due to a polar effect, because expression of genes both upstream and downstream of the insertion appeared to be affected (Fig. 2A). GFP-EpsC production was also higher in log-phase cultures in both the
epsL and epsM mutant backgrounds. The increased production of Eps proteins also occurs in the non-gfp strains and in other mutants generated previously and is thought to be a result of upregulation of the eps promoter whenever secretion via the T2S pathway is prevented (not shown). This is likely mediated by the alternative sigma factor
E, which is upregulated in eps mutants (55) and which has been shown, by microarray analysis, to regulate expression of the eps genes (13).
No secreted protease activity was detected in the supernatants of overnight cultures for any of the deletion mutant strains (Table 3). Protease secretion was restored in both the TRH7000 and gfp fusion mutant strains upon introduction of plasmids expressing the missing genes (Table 3). The pEpsD plasmid restored approximately 50% of secreted protease activity to the various
epsD strains without induction; however, the secretion defect was fully complemented when expression was increased with 10 µM IPTG.
GFP-EpsC requires EpsD for focal assembly.
EpsC orthologs have been suggested to interact with orthologs of outer membrane pore protein EpsD (2, 28, 40) and the inner membrane proteins EpsL and EpsM (20, 29, 44, 57). To begin to dissect the roles of these proteins in formation of GFP-EpsC foci and to determine if GFP fusion technology in combination with fluorescence microscopy provides a useful alternative to molecular and biochemical procedures in mapping protein-protein interactions within the T2S complex, we examined the gfp-epsC strains containing deletions of epsD, epsL, and epsM by fluorescence microscopy. Removal of epsD resulted in loss of the fluorescent foci associated with GFP-EpsC and dispersal of the fluorescence along the entire cell membrane, suggesting that EpsC requires EpsD for focal assembly (Fig. 6B). The membrane fluorescence in the gfp-epsC
epsD strain was brighter than that in the gfp-epsC strain with an intact epsD gene, consistent with the two- to threefold-increased levels of the fusion detected on Western blots (Fig. 2A; compare lanes 2 and 3). Expression of EpsD from a plasmid restored punctate fluorescence to the gfp-epsC
epsD strain, upon induction with 10 µM IPTG (Fig. 6J), the IPTG concentration also required for full complementation of the protease secretion defect (Table 3).
Although the production of all Eps proteins was increased in the
epsD strain, we sought to verify that the dispersed fluorescence of GFP-EpsC in the
epsD strain was not simply due to upregulation of gfp-epsC by removing epsD in the PBAD::eps gfp-epsC strain. Because the native promoter has been replaced in this strain with the arabinose-inducible promoter, the level of production of Eps proteins, including GFP-EpsC, was unchanged upon deletion of epsD. Similar to what was observed with the native promoter, GFP-EpsC fluorescence in the absence of EpsD was dispersed throughout the membrane and lacking all punctate fluorescence (Fig. 7B). These studies indicate a crucial role for EpsD in the formation of fluorescent GFP-EpsC foci.
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FIG. 7. GFP-EpsC localization in the absence and presence of EpsD following overexpression of the eps operon. GFP-EpsC was expressed at similar levels and displayed nonpunctate membrane localization in the PBAD::eps gfp-epsC epsD strain (B) compared to PBAD::eps gfp-epsC (A) following arabinose-mediated induction of the entire eps operon.
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epsL cells contained polar foci, compared to 23% of gfp-epsC cells. In both the
epsL and
epsM mutants, GFP-EpsC was clearly capable of assembling into foci; however, the subtle increase in polarity of the fusion may indicate that it is not being efficiently maintained in the lateral membrane.
EpsL and EpsM have been shown to participate in stabilizing interactions with one another, resulting in mutual protection from proteolysis in both E. coli and V. cholerae (48). Western blot analysis confirmed this mutual stabilization of EpsL and EpsM in the gfp-epsC mutant strain. In log-phase cultures, EpsL and EpsM were found at slightly reduced levels in the absence of the other, an effect that was magnified in stationary-phase culture (Fig. 2B and C, lanes 9 and 10), perhaps due to increased levels of proteases during this growth phase. In stationary-phase cultures, the cells of the gfp-epsC strain examined by fluorescence microscopy were shorter in length but still retained ample fluorescent foci (Fig. 6E). The gfp-epsC
epsL strain retained fluorescent foci as well; however, the majority of GFP-EpsC accumulated at the polar membrane (Fig. 6G). Over 80% of these cells contained polar foci. In the epsM mutant background, GFP-EpsC also accumulated at the polar membrane in stationary-phase cultures (Fig. 6H). Under these conditions, the only punctate fluorescence visible was at the poles, with the remainder of the fluorescent signal in the cytoplasm. The effects of the
epsL and epsM mutations in the gfp-epsC strain were complemented upon expression of the pEpsL and pEpsM plasmids, respectively, restoring lateral fluorescent foci to the cells in the stationary-phase cultures (Fig. 6K and L). Taken together, our data reveal that GFP-EpsC is sensitive to proteolysis in the absence of EpsL and EpsM and that residual GFP-EpsC that escapes degradation accumulates at the poles. This suggests that the EpsL-EpsM complex stabilizes EpsC in a conformation that is required for its maintenance in the lateral membrane. Similar to the polar accumulation of overexpressed GFP-EpsM, these results show that imbalanced expression of GFP-EpsC in comparison to that of certain Eps proteins can also result in mislocalization to the pole.
GFP-EpsM foci are not generated in the absence of EpsD, EpsC, or EpsL.
As with GFP-EpsC, dispersed fluorescence was observed when GFP-EpsM was examined in the absence of EpsD (Fig. 8C). The fluorescence was evenly distributed in the membrane and the cytoplasm, again suggesting that EpsD is required for formation of GFP-EpsM foci. The gfp-epsM
epsC and gfp-epsM
epsL strains had similar appearances, indicating that each of these proteins is also required for localization of GFP-EpsM (Fig. 8B and D). Fluorescent foci were restored in each gfp-epsM deletion strain upon expression of the corresponding complementing plasmid (Fig. 8F to H). The lack of GFP-EpsM foci in the absence of EpsD, EpsC, and EpsL is consistent with the model that the focal complex is built upon EpsD and that the assembly of GFP-EpsM into the complex requires EpsC and EpsL.
Colocalization of GFP-EpsM and mCherry-EpsC. Because orthologs of EpsC have been implicated in direct interactions with orthologs of EpsL and EpsM and our data show that EpsC and EpsM form similar patterns of fluorescence when expressed as GFP fusions, we sought to colocalize EpsC and EpsM by producing mCherry-EpsC and GFP-EpsM in the same cell. Due to the relatively low fluorescence of mCherry, the mcherry-epsC construct was inserted in place of epsC on the chromosome of the PBAD::eps gfp-epsM strain, creating PBAD::eps mcherry-epsC gfp-epsM. This strain carries both tagged genes in addition to chromosomal copies of the unlabeled genes and is capable of increased production of Eps proteins in the presence of arabinose. Measured protease activity in the supernatant of PBAD::eps mcherry-epsC gfp-epsM was comparable to that of wild-type V. cholerae, indicating that these fusions support T2S (Table 3). Fig. 9A, B, and C show the dual-labeled cells when imaged to visualize mCherry, GFP, or both, respectively. Similar to what was seen when MreB was simultaneously labeled with two different fluorescent markers (16), GFP-EpsM and mCherry-EpsC showed partial colocalization. These two tagged proteins were present in sufficient quantities to be simultaneously visualized in 11% of the fluorescent foci.
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FIG. 9. GFP-EpsM and mCherry-EpsC colocalization in V. cholerae cells. Cells of PBAD::eps producing both mCherry-EpsC and GFP-EpsM were imaged with DsRed (A) and GFP (B) filters. (C) Overlays of DsRed and GFP signals are shown, with GFP-EpsM in green, mCherry-EpsC in red, and overlapping signals in yellow.
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Similar findings have been reported with the K. oxytoca homolog PulM, which also accumulates at the polar membrane upon overexpression (4). For these localization studies, gfp-pulM was introduced onto the E. coli chromosome at the
attachment site and induced with IPTG, with the rest of the pul operon expressed from a plasmid. The localization of GFP-PulM in this context looks very similar to our images of uninduced plasmid-encoded GFP-EpsM expressed in the V. cholerae epsM mutant, with an even signal along the circumference of the cell and subtle patches of brighter fluorescence (Fig. 1B). It may be, as with our studies, that more-discrete fluorescent foci could emerge upon more balanced expression of the other Pul proteins with GFP-PulM.
Although overexpression of GFP-EpsM alone results in subcellular localization patterns radically different from that of the chromosomally expressed GFP-EpsM, simultaneous overexpression of GFP-EpsM with the other Eps components from the pBAD promoter results in many distinct fluorescent foci unchanged from those seen when the fusion protein was expressed from the native promoter (Fig. 2). The intensity of the fluorescent foci is also increased; however, at this point it is not possible to determine if each focus represents completely assembled and functional T2S complexes or if some of them consist of assembly intermediates. Our data clearly underscore the importance of localizing components of multiprotein complexes in stoichiometric balance with their interacting partners, however, to determine their subcellular locations.
The general pattern of fluorescence in the gfp-epsC and gfp-epsM strains is reminiscent of other GFP fusion localization patterns that have emerged in the literature in recent years, including the Sec apparatus (7, 54) and several proteins involved in bacterial cell wall synthesis (reviewed in reference 52), including penicillin-binding proteins and bacterial cytoskeletal protein MreB, which appears to form a helical structure. There are likely insufficient complexes in a single V. cholerae cell to generate a contiguous helix of T2S machineries; however, we examined a possible role for MreB filaments in directing insertion and assembly of the T2S complex. Treatment with MreB inhibitor A22 did not appear to disrupt the formation of fluorescent foci in the gfp-epsC strain or interrupt T2S. We cannot say with certainty that the fluorescent foci are maintained at the same precise positions in the A22-treated cells, but secreted protease activity in these cultures further suggested that the T2S complexes are assembled and functional.
Using the chromosomal gfp fusion strains that we constructed, we were also able to study the effects of changing the balance between fusion proteins and their interacting partners using gene deletions, rather than overexpression of a single GFP fusion. The fluorescent foci formed in the gfp-epsC and PBAD::eps gfp-epsC strains dispersed upon deletion of epsD, suggesting that EpsD is critical to the localization of EpsC. On the other hand, GFP-EpsC is capable of forming foci in the absence of either EpsL or EpsM, though there appears to be some degradation of GFP-EpsC and mislocalization to the poles, which becomes very pronounced when both EpsL and EpsM are absent, as in the stationary-phase cultures. Thus, EpsL and EpsM are likely involved in keeping EpsC in a conformation that is required for its maintenance in the lateral membrane. EpsC homologs of other organisms have been shown to interact with both EpsL and EpsM homologs (20, 29, 41, 44, 45, 57), so it may be that direct interactions occur between each of the three proteins. Alternatively, EpsC may interact directly only with EpsL, and EpsM assists by stabilizing this interaction. The gfp-epsM
epsL strain does not exhibit fluorescent foci, consistent with GFP-EpsM requiring EpsL for localization. EpsC and EpsD are each required for formation of GFP-EpsM foci, as well, again consistent with the model that these proteins are prerequisites for EpsL and EpsM localization. We propose a model in which EpsC and EpsD form a dock on which other components of the complex might assemble, with EpsL and EpsM playing a more passive role, perhaps by keeping EpsC in a conformation that allows for its maintenance in the lateral membrane.
In an attempt to localize EpsC and EpsM to the same visible foci in the cell, we simultaneously labeled EpsC with the red fluorescent protein mCherry and EpsM with GFP. A merged image (Fig. 9C) shows the colocalization pattern of mCherry-EpsC and GFP-EpsM. Although some yellow foci, representing the overlap of red and green fluorescent proteins, are present, many foci are nonoverlapping. It is possible that the overlapping foci are the only locations in the cell where fully assembled T2S complexes exist. The visible red or green foci could therefore represent T2S complexes not yet fully assembled. Considering the relative instability of GFP-EpsM (Fig. 2A and D), it also seems reasonable that these foci may contain a mixture of full-length fluorescent forms of the fusions and those that have been cleaved and are no longer fluorescent.
In many colocalization studies, steric hindrance is often a factor (58), and it is conceivable that there simply is not enough physical space for two oligomeric, fluorescently tagged proteins to bind and interact in the same complex. When Dye and colleagues labeled MreB, a protein known to form long, helical filaments in Caulobacter cresentus, with two different fluorescent markers, they observed only partial colocalization of the two tagged versions (16), suggesting that a high percentage of visible overlap may not be possible. In the case of the T2S complex, although the individual components that make up the system are known, exactly how these proteins come together to create a large multiprotein complex is not well understood. EpsD is believed to form a ring-like assembly of 12 subunits in the outer membrane, while EpsL and EpsM are thought to exist as an unknown number of dimers in the inner membrane (25; also see Fig. S1 in the supplemental material). Neither the number of EpsC proteins needed to link the two membrane substructures together nor the number of fluorescent molecules necessary for visible foci to be detected is known. It is possible that the nonoverlapping foci represent T2S complexes containing both EpsM and EpsC, but not yet a complete oligomer of one or the other fluorescently labeled protein.
Our microscopy experiments indicate that EpsC localization requires EpsD, but it is unclear based on the current data whether both proteins are necessary for formation of a docking subcomplex or whether EpsD initiates placement of EpsC. The very recent finding that the EpsD homolog PulD localizes in a punctate pattern throughout the cell envelope when expressed in E. coli in the absence of PulC-PulN provides support for the latter suggestion (5). Oligomerization of EpsD, for example, may be the driving force behind nucleation of EpsC, and once EpsD pores are formed, their diffusion through the membrane may be constrained by interactions with other cell wall components, such as peptidoglycan and lipopolysaccharides.
We will continue to exploit this cell biological approach of GFP-EpsC localization to elucidate the relationship between the EpsC and EpsD proteins in vivo, to ensure that critical interactions with the cell envelope are maintained and to further dissect the roles of these two proteins in localization of the T2S complex. Studies of other combinations of gfp fusions and deletions of eps genes will also help us continue to refine our model of T2S complex assembly. Similar approaches have been very successful in defining the ordered assembly of other localized multiprotein complexes. For example, the recruitment of Fts cell division components to the septum has been found to occur in a sequential fashion (21, 30). With this approach and others that employ fluorescent proteins as tools for assessing protein-protein interactions in living cells, we expect to identify stages of assembly that may be otherwise difficult to elucidate outside the context of the membrane environment and the complete T2S complex.
This work was supported by grant AI49294 from the National Institutes of Health (to M.S.), and S.R.L. and M.D.G. were supported in part by National Institutes of Health training grants HL007698 and AI007258, respectively.
Published ahead of print on 27 February 2009. ![]()
Supplemental material for this article may be found at http://jb.asm.org/. ![]()
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