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Journal of Bacteriology, January 1999, p. 218-224, Vol. 181, No. 1
Department of Microbiology, University of
Iowa, Iowa City, Iowa 52242
Received 18 May 1998/Accepted 20 October 1998
Terminase, an enzyme encoded by the Nu1 and
A genes of bacteriophage lambda, is crucial for packaging
concatemeric DNA into virions. cosN, a 22-bp segment, is
the site on the virus chromosome where terminase introduces staggered
nicks to cut the concatemer to generate unit-length virion chromosomes.
Although cosN is rotationally symmetric, mutations in
cosN have asymmetric effects. The cosN G2C mutation (a G-to-C change at position 2) in the left
half of cosN reduces the phage yield 10-fold, whereas the
symmetric mutation cosN C11G, in the right half
of cosN, does not affect the burst size. The reduction in
phage yield caused by cosN G2C is correlated
with a defect in cos cleavage. Three suppressors of the
cosN G2C mutation,
A-E515G, A-N509K, and
A-R504C, have been isolated that restore the
yield of
0021-9193/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
Mutations That Extend the Specificity of the
Endonuclease Activity of
Terminase

cosN G2C to the wild-type level.
The suppressors are missense mutations that alter amino acids located
near an ATPase domain of gpA.
A-E515G,
A-N509K, and A-R504C
phages, which are cosN+, also had wild-type
burst sizes. In vitro cos cleavage experiments on
cosN G2C C11G DNA showed that the
rate of cleavage for A-E515G terminase is
three- to fourfold higher than for wild-type terminase. The
A-E515G mutation changes residue 515 of gpA
from glutamic acid to glycine. Uncharged polar and hydrophobic residues
at position 515 suppressed the growth defect of
cosN
G2C C11G. In contrast, basic (K, R) and acidic
(E, D) residues at position 515 failed to suppress the growth defect of
cosN G2C C11G. In a
cosN+ background, all amino acids tested at
position 515 were functional. These results suggest that
A-E515G plays an indirect role in extending the
specificity of the endonuclease activity of
terminase.
*
Corresponding author. Mailing address: 3-301G, BSB,
University of Iowa, Iowa City, IA 52242. Phone: 319 335 8866. Fax: 319 335 9006. E-mail: jean-sippy{at}uiowa.edu.
Present address: Infectious Disease Laboratory, The Salk Institute,
La Jolla, CA 92037-1099.
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