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Journal of Bacteriology, July 2001, p. 4296-4304, Vol. 183, No. 14
Institute of Molecular and Cellular
Biosciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo
113-0032,1 and Department of
Microbiology and Immunology, Institute of Medical Science, The
University of Tokyo, 4-6-1 Shirokanedai, Minatoku, Tokyo
108-8639,2 Japan
Received 22 February 2001/Accepted 27 April 2001
A new insertion sequence (IS) element, IS679 (2,704 bp
in length), has been identified in plasmid pB171 of enteropathogenic Escherichia coli B171. IS679 has imperfect
25-bp terminal inverted repeats (IRs) and three open reading frames
(ORFs) (here called tnpA, tnpB, and tnpC). A
plasmid carrying a composite transposon (Tn679) with the
kanamycin resistance gene flanked by an intact IS679
sequence and an IS679 fragment with only IRR (IR on the right) was constructed to clarify the transposition activity of IS679. A transposition assay done with a mating system
showed that Tn679 could transpose at a high frequency to
the F plasmid derivative used as the target. On transposition,
Tn679 duplicated an 8-bp sequence at the target site.
Tn679 derivatives with a deletion in each ORF of
IS679 did not transpose, finding indicative that all three
IS679 ORFs are essential for transposition. The tnpA and tnpC products appear to have the amino
acid sequence motif characteristic of most transposases. A homology
search of the databases found that a total of 25 elements homologous to IS679 are present in Agrobacterium, Escherichia,
Rhizobium, Pseudomonas, and Vibrio spp., providing
evidence that the elements are widespread in gram-negative bacteria. We
found that these elements belong to the IS66 family, as do
other elements, including nine not previously reported. Almost all of
the elements have IRs similar to those in IS679 and, like
IS679, most appear to have duplicated an 8-bp sequence at
the target site on transposition. These elements have three ORFs
corresponding to those in IS679, but many have a
mutation(s) in an ORF(s). In almost all of the elements,
tnpB is located in the
0021-9193/01/$04.00+0 DOI: 10.1128/JB.183.14.4296-4304.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
Structural and Functional Characterization of
IS679 and IS66-Family Elements
1 frame relative to
tnpA, such that the initiation codon of tnpB
overlaps the TGA termination codon of tnpA. In contrast, tnpC, separated from tnpB by a space of ca. 20 bp, is located in any one of three frames relative to tnpB.
No common structural features were found around the intergenic regions,
indicating that the three ORFs are expressed by translational coupling
but not by translational frameshifting.
*
Corresponding author. Mailing address: Institute of
Molecular and Cellular Biosciences, The University of Tokyo, Yayoi
1-1-1, Bunkyo-ku, Tokyo 113-0032, Japan. Phone: 81-3-5841-7852. Fax: 81-3-5841-8484. E-mail: eohtsubo{at}ims.u-tokyo.ac.jp.
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