Article Figures & Data
Tables
- Table 1.
DNA probes used in this study
Borrelia plasmid source DNA probea Locationb ORFs in probeb lp5 CB63c 3413–5195 T05–T06 lp17 CL47 63–2418 D01–D04 D11d 6949–7679 D11 lp21 CZ32 6788–8697 63-bp repeat region DF29c 16772–18682 U10–U12 lp25 DE21 13151–14265 E20–E21 CG18 19568–21587 E29 lp28-1 DD60 5149–6980 F11–F13 EN57c 24797–26510 vlsEcassettes lp28-2 DK44 1–442 G01 EI58 6700–8688 G09–G10 lp28-3 CT53c 3659–4392 H08–H09 CQ68 12620–14584 H18–H20 lp28-4 EE50 2526–3627 I06–I07 CV69 4726–6439 I11–I14 EL95 17047–19017 I27–I29 lp36 DK60 2334–4214 K02–K04 FI78 7569–9698 K12–K15 CQ33c 12657–15072 K19–K22 GI88 26201–26513 K41 EH86 31975–33745 K49–K50 lp38 BA19c 22–1483 J001 DH08 3958–6033 J07–J08 CQ63 13730–16123 J20–J22 DH46 21666–23409 J28–J30 FA84 26057–28222 J34–J36 CT79c 35768–37561 J48–J50 lp54 CM64 427–2449 A01–A04 A24/25d ∼15800–17300 A24–A25 (dbpAB) lp56 BL05 3022–3666 Q05–Q06 EK58 42201–44134 Q67–Q69 ↵a DNA clone numbers from genome sequencing project (8, 12).
↵b Base pair location and open reading frame (ORF) nomenclature are as in Fraser et al. (12) and Casjens et al. (8).
↵c Showed some weak hybridization to other plasmids when probing B31 MI DNA.
↵d Uncloned PCR product made with whole B. burgdorferi B31 MI DNA as template.
- Table 2.
Similar sequences among linear plasmids of independent isolates of B. burgdorferia
Strain (origin) Hybridization of strain B31 probes to independently isolated strains p5 lp17 lp21 lp25 lp28-1 lp28-2 lp28-3 lp28-4 lp36 lp38 lp54 lp56 CB63 CL47 D11 CZ32 DF29 DE21 CG18 DD60 EN57 DK44 EI58 CT53 CQ68 EE50 CV69 EL95 DK60 FI78 CQ33 GI88 EH86 BA19 DH08 CQ63 DH46 FA84 CT79 CM64 A24/25 BL05 EK58 19678 (NY) — — — — — (24) (24) (30) 30, (27) (29) (29) 28, (37) 28 29 (28) (28) 36 — 35, (31) 35 35 38 38 38 38 38 38 — 54 — — 21645 (WI) — — (17) — — (24) — — (25) 29 (29) 28 28 29 29 (29) — — 25 — (25) — — — — — — (54) 54 — — 21721 (WI) — — — — — (24) — 26 (21, 37) 27 — (28, 30) 30 30 30 29 — — 26 — (26) 36 36 36 36 36 36, (28) (54) 54 — — 27579 (CT) — (15) — — — 30 — — 21 (28, 29) (29) (31) 30 29 29 28 28 — 28 28 29, (30) 38 38 38 38 38 38 (54) 54 — — 27982 (PA) — 17, (22) (17, 22) — — (24) (24, 48) 26 (25, 29) (29) (29) (28) 28, (30) 29 (29) 29 (17, 24) — 25 — (25, 30) — — — — — (36) — (54) — — 27985 (CT) — — — — — 24 (24, 54) 28 28 (37, 45, 54) 29 (29) 28, 36 28 28 28 28 36 — 29, 36 36 36 38 38 38 38 — 38 (54) 54 55 55 28534 (MD) — — (17) — — — — 23, (28) (26) (26, 29) 27 28 28 29 29 29 (25) — 25 25, 29 25, 29 — — — — — — 54 54 — — 29592 (CT) — 22 22 — — 24 24 (29) 30, (36) 29 29 30, (24) 30 29 29 30 23 — 30 30 30, (25) 37 37 37 37 37 37, (29) (54) 54 — — 29805 (CT) — 33 (17) — — (24) (24) — 33, (29) 29 30, (35) 30 29 28 30 (29) — — 34, (30) 30 38 38 38 38 38 38, (30) (54) 54 — — 30757 (CT) — — (17) 24 24 24 (24) 25, 28 28, (45, 54) 29 (29) 28, 36 28 27 27 27 36 36 36 36, (28) 36 — — — — — — 54 54 55 55 CA-3-87 (CA) — — — — — 24 (28) — 33, (27) — — (28) 28 28 — 29 — — 38 38 38 — — — — — — 54 54 — — WI91-23 (WI) 5 15 (16) — — 23 25 — 27 27 (27, 28) 27 27 27 27 28 (29) — 29 29, (27) 29, (28) 38 38 38 (38) 38 38 — (54) — — N40 (NY) (5) 22 22 — — 23 24 26 29 29, (27) 29 (24, 29) — 28 28 30 23 — 30 29 30 37 37 37 37 37 37, (27, 28) (54) 54 — — HB19 (CT) — — — — — 24 24 24 26, (37) 24, 27 27, 29 28, (54) 27 28 28 29 (29) — 29 29, (28) 30 38 38 38 38 38 38 54 54 — — B31 (NY) 5, (20) 17 17 20 20 24 24, (54) 28 28, (36, 54) 29 29 28, (36) 28 27 27 27 36 36 28, 36 36 36 38 38 38 38 38 38, (29) 54 54 55 55 ↵a The United States state from which each of the strains was isolated is indicated in parentheses next to the strain name. Probes were picked from E. coli pUC18 plasmid clones used in the genone sequencing project (6, 12). Values in table are sizes in kilobase pairs for plasmids that hybridize to the indicated DNA probes (accurate to about ±0.5, ±1.5, and ±3 kbp for 5 to 10, 10 to 30, and 30 to 60 kbp ranges, respectively). —, no hybridization was seen. Values in parentheses indicate relatively weak hybridization.
- Table 3.
Summary of B31 counterpart linear plasmids present in natural isolates of B. burgdorferia
Strain (origin) Hybridization of DNA probes to B. burgdorferi isolates lp5 lp17 lp21 lp25 lp28-1 lp28-2 lp28-3 lp28-4 lp36 lp38 lp54 lp56 19678 (NY) − −− −− ++ ++ ++ ++ +++ +−+++ ++++++ −+ −− 21645 (WI) − −+ −− +− −+ ++ ++ +++ −−+−+ −−−−−− ++ −− 21721 (WI) − −− −− +− +✙ −+ ++ +++ −−+−+ ++++++ ++ −− 27579 (CT) − +− −− +− −+ ++ ++ +++ +−+++ ++++++ ++ −− 27982 (PA) − ++ −− ++ ++ ++ ++ +++ +−+−+ −−−−−+ −+ −− 27985 (CT) − −− −− ++ ++ ++ ++ +++ +−+++ ++++−+ ++ ++ 28534 (MD) − −+ −− −− ++ ++ ++ +++ +−+++ −−−−−− ++ −− 29592 (CT) − ++ −− ++ ++ ++ ++ +++ ✙−+++ ++++++ ++ −− 29805 (CT) − ✙+ −− ++ −+ ++ ++ +++ +−−++ ++++++ ++ −− 30757 (CT) − −+ ++ ++ ++ ++ ++ +++ +++++ −−−−−− ++ ++ CA-3-87 (CA) − −− −− +✙ −+ −− ++ −++ −−+++ −−−−−− ++ −− WI91-23 (WI) + ++ −− ++ −+ ++ ++ +++ +−+++ ++++++ −+ −− N40 (NY) + ++ −− ++ ✙+ ++ +− +++ ✙−+++ ++++++ ++ −− HB19 (CT) − −− −− ++ ++ ++ ++ +++ +−+++ ++++++ ++ −− B31 MI (NY) + ++ ++ ++ ++ ++ ++ +++ +++++ ++++++ ++ ++ ↵a Strain names are followed by the name of the United States state (in parentheses) in which they were isolated. Each of the remaining columns represents a different DNA probe from Table 1, going from left to right across each plasmid map (orientation as in references 8 and12). −, no hybridization; +, hybridization occurred with a plasmid similar in size (<15% different) to the B31 plasmid from which the probe was derived (hybridization to other plasmids may also have occurred); + and ✙, hybridization toonly a plasmid(s) >15% different in size from the B31 plasmid from which the probe was derived; ✙, hybridization in that strain only to a plasmid(s) of a size >10% different from the plasmid(s) with which other probes from that B31 plasmid react.
- Table 4.
B. garinii and B. afzelii linear plasmid hybridization targetsa
Strain [passage no.] (location) Source Results of hybridization with strain B31 plasmid probes lp17 (CL47) lp25 (DE21) lp28-1 (DD60) lp28-2 (EI58) lp28-3 (CQ68) lp28-4 (CV69) lp36 (CQ33) lp38 (DH46) lp54 (CM64) lp56 (EK58) B. garinii 153 [11] (FR) R. Marconi 22, (34) (37) — 34, 48 35, (54) 48 — 22 54 34 FujiP2 (JA) R. Johnson 23, (28) 25 — 28 (54) 29, (23) 22 30 54, (20) 23, 31 G1 (GE) T. Schwan 21, (30) (30) — — (54) — (21) (22) (54) (20) G25 [8] (SW) R. Marconi 21, (30) 30 — — (54) — 21 (22) 54 20 IP89 (RU) R. Johnson 22 (30) — 29 ND (29) 22 30 56 31 IP90 (RU) T. Schwan 23, (35, 37, 42) (36.5) — 42 35, 54 34 23 23 54 — IR210 (RU) I. Schwartz 22, 30, (38) (30, 38) — — (54) 36 21 36, 38, (22) 54 20, 37 Las (AU) I. Schwartz 22, (35) — — — (54) — 21 (22) 54 20 NBS23a (SW) I. Schwartz 23 (38) — — (54) (40) — 22 53 — NBS23b (SW) I. Schwartz 23 — — — 54 (32) — 22 (53) — PBi (GE) T. Schwan 22, 31 30 — — 54 (25) 21 (22) 54 20 VSBP [10] (ST) R. Marconi (21, 30) 27.5 — — (54) 36.5 (21) 36, (22) 55 (20) B. afzelii AO1 (NL) R. Marconi 26 56 — — (54) ND — — (56) — EMC1 (SW) R. Marconi 25, (34) — — 26, 29 (54) 34 — (25) 54, (24) (25) HT10 (JA) R. Marconi 23, (34) 30 — 25 (54) 34, (25) — (25) 54, (26) (25) IP21 (RU) R. Marconi 25, (28) — — 28 (54) 32, (25) — (25) 53, (28) (25) PGau (GE) T. Schwan 25 27 — 29 (54) (34) — (25) 54, (24) — PKo [5] (GE) R. Marconi 26 27 — 27 (54) (34) — (26) 54, (24) (32) UM01 (SW) R. Marconi 25, (30) 27 — 30 (54) (25) — (25.5) 54, (24, 30) (25) UO1 (SW) R. Marconi 23, (34, 37, 41) 24 (37) — 42 35, 54 34 23.5 24 54 — ↵a All cultures were low passage, exact passage number is given where it is known, and country where the strain was isolated is given in parentheses (AU, Austria; FR, France; GE, Germany; JA, Japan; NL, The Netherlands; RU, Russia; SW, Sweden; ST, Switzerland). Values are sizes (in kilobase pairs) of linear plasmids that hybridized to the probes (listed in Table 1) given at the top of each column; values in parentheses indicate less intense hybridization. ND, not determined; —, no hybridization.