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Table of Contents

August 1, 2004; Volume 186,Issue 15

Guest Commentaries

  • GUEST COMMENTARY
    Vibrio cholerae Biofilms: Stuck between a Rock and a Hard Place
    Douglas M. Heithoff, Michael J. Mahan

Dialog

  • Dialog
    Adaptive Point Mutation and Adaptive Amplification Pathways in the Escherichia coli Lac System: Stress Responses Producing Genetic Change
    Susan M. Rosenberg, P. J. Hastings
  • Dialog
    Rebuttal: Adaptive Point Mutation (Rosenberg and Hastings)
    John R. Roth, Dan I. Andersson
  • Dialog
    Rebuttal: Adaptive Point Mutation (Rosenberg and Hastings)
    Patricia L. Foster
  • Dialog
    Adaptive Mutation in Escherichia coli
    Patricia L. Foster
  • Dialog
    Rebuttal: Adaptive Mutation in Escherichia coli (Foster)
    Susan M. Rosenberg, P. J. Hastings
  • Dialog
    Rebuttal: Adaptive Mutation in Escherichia coli (Foster)
    John R. Roth, Dan I. Andersson
  • Dialog
    Adaptive Mutation: How Growth under Selection Stimulates Lac+ Reversion by Increasing Target Copy Number
    John R. Roth, Dan I. Andersson
  • Dialog
    Rebuttal: Growth under Selection Stimulates Lac+ Reversion (Roth and Andersson)
    Patricia L. Foster
  • Dialog
    Rebuttal: Growth under Selection Stimulates Lac+ Reversion (Roth and Andersson)
    Susan M. Rosenberg, P. J. Hastings

Signal Transduction

  • SIGNAL TRANSDUCTION
    The Sodium-Driven Flagellar Motor Controls Exopolysaccharide Expression in Vibrio cholerae
    Crystal M. Lauriano, Chandradipa Ghosh, Nidia E. Correa, Karl E. Klose
  • SIGNAL TRANSDUCTION
    Three-Dimensional Electron Microscopic Imaging of Membrane Invaginations in Escherichia coli Overproducing the Chemotaxis Receptor Tsr
    Jonathan Lefman, Peijun Zhang, Teruhisa Hirai, Robert M. Weis, Jemma Juliani, Donald Bliss, Martin Kessel, Erik Bos, Peter J. Peters, Sriram Subramaniam

Microbial Cell Biology

  • Microbial Cell Biology
    Three Different Systems Participate in l-Cystine Uptake in Bacillus subtilis
    Pierre Burguière, Sandrine Auger, Marie-Françoise Hullo, Antoine Danchin, Isabelle Martin-Verstraete
  • Microbial Cell Biology
    Ribosomal Protein S1 Specifically Binds to the 5′ Untranslated Region of the Pseudomonas aeruginosa Stationary-Phase Sigma Factor rpoS mRNA in the Logarithmic Phase of Growth
    Milica Ševo, Emanuele Buratti, Vittorio Venturi
  • Microbial Cell Biology
    Secretion and Function of Salmonella SPI-2 Effector SseF Require Its Chaperone, SscB
    Shipan Dai, Daoguo Zhou
  • Microbial Cell Biology
    PBP1 Is a Component of the Bacillus subtilis Cell Division Machinery
    Dirk-Jan Scheffers, Jeffery Errington
  • Microbial Cell Biology
    Biochemical Study of Multiple CheY Response Regulators of the Chemotactic Pathway of Rhodobacter sphaeroides
    Axelle Ferré, Javier de la Mora, Teresa Ballado, Laura Camarena, Georges Dreyfus

Enzymes and Proteins

  • ENZYMES AND PROTEINS
    Molecular Cloning and Characterization of Bifidobacterium bifidum 1,2-α-l-Fucosidase (AfcA), a Novel Inverting Glycosidase (Glycoside Hydrolase Family 95)
    Takane Katayama, Akiko Sakuma, Takatoshi Kimura, Yutaka Makimura, Jun Hiratake, Kanzo Sakata, Takashi Yamanoi, Hidehiko Kumagai, Kenji Yamamoto
  • ENZYMES AND PROTEINS
    The Phosphoenolpyruvate Carboxylase from Methanothermobacter thermautotrophicus Has a Novel Structure
    Hiten M. Patel, Jessica L. Kraszewski, Biswarup Mukhopadhyay
  • ENZYMES AND PROTEINS
    Polyphosphate Synthetic Activity of Polyphosphate:AMP Phosphotransferase in Acinetobacter johnsonii 210A
    Hiromichi Itoh, Toshikazu Shiba

Genetics and Molecular Biology

  • GENETICS AND MOLECULAR BIOLOGY
    A Novel p-Nitrophenol Degradation Gene Cluster from a Gram-Positive Bacterium, Rhodococcus opacus SAO101
    Wataru Kitagawa, Nobutada Kimura, Yoichi Kamagata
  • GENETICS AND MOLECULAR BIOLOGY
    PspG, a New Member of the Yersinia enterocolitica Phage Shock Protein Regulon
    Rebecca C. Green, Andrew J. Darwin
  • GENETICS AND MOLECULAR BIOLOGY
    Identification of the Protease and the Turnover Signal Responsible for Cell Cycle-Dependent Degradation of the Caulobacter FliF Motor Protein
    Björn Grünenfelder, Sherif Tawfilis, Stefanie Gehrig, Magne Østerås, Daniel Eglin, Urs Jenal
  • GENETICS AND MOLECULAR BIOLOGY
    Circadian Rhythms in the Thermophilic Cyanobacterium Thermosynechococcus elongatus: Compensation of Period Length over a Wide Temperature Range
    Kiyoshi Onai, Megumi Morishita, Shino Itoh, Kazuhisa Okamoto, Masahiro Ishiura
  • GENETICS AND MOLECULAR BIOLOGY
    The Global Regulator Genes from Biocontrol Strain Serratia plymuthica IC1270: Cloning, Sequencing, and Functional Studies
    Marianna Ovadis, Xiaoguang Liu, Sagi Gavriel, Zafar Ismailov, Ilan Chet, Leonid Chernin
  • GENETICS AND MOLECULAR BIOLOGY
    A Type II Protein Secretory Pathway Required for Levansucrase Secretion by Gluconacetobacter diazotrophicus
    Juan G. Arrieta, Mailin Sotolongo, Carmen Menéndez, Dubiel Alfonso, Luis E. Trujillo, Melvis Soto, Ricardo Ramírez, Lázaro Hernández
  • GENETICS AND MOLECULAR BIOLOGY
    The Homogentisate Pathway: a Central Catabolic Pathway Involved in the Degradation of l-Phenylalanine, l-Tyrosine, and 3-Hydroxyphenylacetate in Pseudomonas putida
    Elsa Arias-Barrau, Elías R. Olivera, José M. Luengo, Cristina Fernández, Beatriz Galán, José L. García, Eduardo Díaz, Baltasar Miñambres
  • GENETICS AND MOLECULAR BIOLOGY
    Expression of a Functional Secreted YopN-TyeA Hybrid Protein in Yersinia pestis Is the Result of a +1 Translational Frameshift Event
    Franco Ferracci, James B. Day, Heather J. Ezelle, Gregory V. Plano
  • GENETICS AND MOLECULAR BIOLOGY
    Evolution of the Helicobacter pylori Vacuolating Cytotoxin in a Human Stomach
    Francisco Aviles-Jimenez, Darren P. Letley, Gerardo Gonzalez-Valencia, Nina Salama, Javier Torres, John C. Atherton

Genomics and Proteomics

  • Genomics and Proteomics
    Systematic Mutagenesis of the Escherichia coli Genome
    Yisheng Kang, Tim Durfee, Jeremy D. Glasner, Yu Qiu, David Frisch, Kelly M. Winterberg, Frederick R. Blattner
  • Genomics and Proteomics
    Comparative Whole-Genome Hybridization Reveals Genomic Islands in Brucella Species
    Gireesh Rajashekara, Jeremy D. Glasner, David A. Glover, Gary A. Splitter

Molecular Biology of Pathogens

  • MOLECULAR BIOLOGY OF PATHOGENS
    Fibronectin Binding to the Salmonella enterica Serotype Typhimurium ShdA Autotransporter Protein Is Inhibited by a Monoclonal Antibody Recognizing the A3 Repeat
    Robert A. Kingsley, Daad Abi Ghanem, Nahum Puebla-Osorio, A. Marijke Keestra, Luc Berghman, Andreas J. Bäumler
  • MOLECULAR BIOLOGY OF PATHOGENS
    Induction of a Novel Class of Diacylglycerol Acyltransferases and Triacylglycerol Accumulation in Mycobacterium tuberculosis as It Goes into a Dormancy-Like State in Culture
    Jaiyanth Daniel, Chirajyoti Deb, Vinod S. Dubey, Tatiana D. Sirakova, Bassam Abomoelak, Hector R. Morbidoni, Pappachan E. Kolattukudy
  • MOLECULAR BIOLOGY OF PATHOGENS
    Cloning Serratia entomophila Antifeeding Genes—a Putative Defective Prophage Active against the Grass Grub Costelytra zealandica
    Mark R. H. Hurst, Travis R. Glare, Trevor A. Jackson
  • MOLECULAR BIOLOGY OF PATHOGENS
    The ompU Paralogue vca1008 Is Required for Virulence of Vibrio cholerae
    Carlos G. Osorio, Hector Martinez-Wilson, Andrew Camilli

Physiology and Metabolism

  • PHYSIOLOGY AND METABOLISM
    Two Biosynthetic Pathways for Aromatic Amino Acids in the Archaeon Methanococcus maripaludis
    Iris Porat, Brian W. Waters, Quincy Teng, William B. Whitman
  • PHYSIOLOGY AND METABOLISM
    Characterization of the 3-O-Methylgallate Dioxygenase Gene and Evidence of Multiple 3-O-Methylgallate Catabolic Pathways in Sphingomonas paucimobilis SYK-6
    Daisuke Kasai, Eiji Masai, Keisuke Miyauchi, Yoshihiro Katayama, Masao Fukuda

Gene Regulation

  • GENE REGULATION
    6S RNA Function Enhances Long-Term Cell Survival
    Amy E. Trotochaud, Karen M. Wassarman
  • GENE REGULATION
    Cellular Levels of trp RNA-Binding Attenuation Protein in Bacillus subtilis
    Barbara C. McCabe, Paul Gollnick

Population Genetics and Evolution

  • POPULATION GENETICS AND EVOLUTION
    Intraspecific Phylogeny and Lineage Group Identification Based on the prfA Virulence Gene Cluster of Listeria monocytogenes†
    Todd J. Ward, Lisa Gorski, Monica K. Borucki, Robert E. Mandrell, Jan Hutchins, Kitty Pupedis
  • POPULATION GENETICS AND EVOLUTION
    DNA Microarray Analysis of Genome Dynamics in Yersinia pestis: Insights into Bacterial Genome Microevolution and Niche Adaptation
    Dongsheng Zhou, Yanping Han, Yajun Song, Zongzhong Tong, Jin Wang, Zhaobiao Guo, Decui Pei, Xin Pang, Junhui Zhai, Min Li, Baizhong Cui, Zhizhen Qi, Lixia Jin, Ruixia Dai, Zongmin Du, Jingyue Bao, Xiuqing Zhang, Jun Yu, Jian Wang, Peitang Huang, Ruifu Yang
  • POPULATION GENETICS AND EVOLUTION
    Genetics of Metabolic Variations between Yersinia pestis Biovars and the Proposal of a New Biovar, microtus
    Dongsheng Zhou, Zongzhong Tong, Yajun Song, Yanping Han, Decui Pei, Xin Pang, Junhui Zhai, Min Li, Baizhong Cui, Zhizhen Qi, Lixia Jin, Ruixia Dai, Zongmin Du, Jin Wang, Zhaobiao Guo, Jian Wang, Peitang Huang, Ruifu Yang

Bacteriophages, Transposons, and Plasmids

  • Bacteriophages, Transposons, and Plasmids
    Replication of Enterococcus faecalis Pheromone-Responding Plasmid pAD1: Location of the Minimal Replicon and oriV Site and RepA Involvement in Initiation of Replication
    Maria Victoria Francia, Shuhei Fujimoto, Patricia Tille, Keith E. Weaver, Don B. Clewell
  • Bacteriophages, Transposons, and Plasmids
    Nucleotide Sequence and Evolution of the Five-Plasmid Complement of the Phytopathogen Pseudomonas syringae pv. maculicola ES4326
    John Stavrinides, David S. Guttman

Microbial Communities and Interactions

  • MICROBIAL COMMUNITIES AND INTERACTIONS
    A Movable Surface: Formation of Yersinia sp. Biofilms on Motile Caenorhabditis elegans
    Li Tan, Creg Darby

Structural Biology

  • STRUCTURAL BIOLOGY
    A Second Lysine-Specific Serine Protease from Lysobacter sp. Strain IB-9374
    Shigeru Chohnan, Kentaro Shiraki, Kiyonobu Yokota, Makoto Ohshima, Natsuki Kuroiwa, Kashfia Ahmed, Takeharu Masaki, Fumio Sakiyama
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Journal of Bacteriology: 186 (15)

In This Issue

volume 186, issue 15
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  • Guest Commentaries
  • Dialog
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  • Genomics and Proteomics
  • Molecular Biology of Pathogens
  • Physiology and Metabolism
  • Gene Regulation
  • Population Genetics and Evolution
  • Bacteriophages, Transposons, and Plasmids
  • Microbial Communities and Interactions
  • Structural Biology
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  • Lag Phase Is a Dynamic, Organized, Adaptive, and Evolvable Period That Prepares Bacteria for Cell Division
  • Understanding the Genetic Code
  • Light Modulates the Physiology of Nonphototrophic Actinobacteria
  • Transposon Insertion Sequencing in a Clinical Isolate of Legionella pneumophila Identifies Essential Genes and Determinants of Natural Transformation
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