Journal of Bacteriology: 186 (15)

August 1, 2004; Volume 186,Issue 15

Guest Commentaries

GUEST COMMENTARY
Vibrio cholerae Biofilms: Stuck between a Rock and a Hard Place
Douglas M. Heithoff, Michael J. Mahan

Dialog

Dialog
Adaptive Point Mutation and Adaptive Amplification Pathways in the Escherichia coli Lac System: Stress Responses Producing Genetic Change
Susan M. Rosenberg, P. J. Hastings
Dialog
Rebuttal: Adaptive Point Mutation (Rosenberg and Hastings)
John R. Roth, Dan I. Andersson
Dialog
Rebuttal: Adaptive Point Mutation (Rosenberg and Hastings)
Patricia L. Foster
Dialog
Adaptive Mutation in Escherichia coli
Patricia L. Foster
Dialog
Rebuttal: Adaptive Mutation in Escherichia coli (Foster)
Susan M. Rosenberg, P. J. Hastings
Dialog
Rebuttal: Adaptive Mutation in Escherichia coli (Foster)
John R. Roth, Dan I. Andersson
Dialog
Adaptive Mutation: How Growth under Selection Stimulates Lac⁺ Reversion by Increasing Target Copy Number
John R. Roth, Dan I. Andersson
Dialog
Rebuttal: Growth under Selection Stimulates Lac⁺ Reversion (Roth and Andersson)
Patricia L. Foster
Dialog
Rebuttal: Growth under Selection Stimulates Lac⁺ Reversion (Roth and Andersson)
Susan M. Rosenberg, P. J. Hastings

Signal Transduction

SIGNAL TRANSDUCTION
The Sodium-Driven Flagellar Motor Controls Exopolysaccharide Expression in Vibrio cholerae
Crystal M. Lauriano, Chandradipa Ghosh, Nidia E. Correa, Karl E. Klose
SIGNAL TRANSDUCTION
Three-Dimensional Electron Microscopic Imaging of Membrane Invaginations in Escherichia coli Overproducing the Chemotaxis Receptor Tsr
Jonathan Lefman, Peijun Zhang, Teruhisa Hirai, Robert M. Weis, Jemma Juliani, Donald Bliss, Martin Kessel, Erik Bos, Peter J. Peters, Sriram Subramaniam

Microbial Cell Biology

Microbial Cell Biology
Three Different Systems Participate in l-Cystine Uptake in Bacillus subtilis
Pierre Burguière, Sandrine Auger, Marie-Françoise Hullo, Antoine Danchin, Isabelle Martin-Verstraete
Microbial Cell Biology
Ribosomal Protein S1 Specifically Binds to the 5′ Untranslated Region of the Pseudomonas aeruginosa Stationary-Phase Sigma Factor rpoS mRNA in the Logarithmic Phase of Growth
Milica Ševo, Emanuele Buratti, Vittorio Venturi
Microbial Cell Biology
Secretion and Function of Salmonella SPI-2 Effector SseF Require Its Chaperone, SscB
Shipan Dai, Daoguo Zhou
Microbial Cell Biology
PBP1 Is a Component of the Bacillus subtilis Cell Division Machinery
Dirk-Jan Scheffers, Jeffery Errington
Microbial Cell Biology
Biochemical Study of Multiple CheY Response Regulators of the Chemotactic Pathway of Rhodobacter sphaeroides
Axelle Ferré, Javier de la Mora, Teresa Ballado, Laura Camarena, Georges Dreyfus

Enzymes and Proteins

ENZYMES AND PROTEINS
Molecular Cloning and Characterization of Bifidobacterium bifidum 1,2-α-l-Fucosidase (AfcA), a Novel Inverting Glycosidase (Glycoside Hydrolase Family 95)
Takane Katayama, Akiko Sakuma, Takatoshi Kimura, Yutaka Makimura, Jun Hiratake, Kanzo Sakata, Takashi Yamanoi, Hidehiko Kumagai, Kenji Yamamoto
ENZYMES AND PROTEINS
The Phosphoenolpyruvate Carboxylase from Methanothermobacter thermautotrophicus Has a Novel Structure
Hiten M. Patel, Jessica L. Kraszewski, Biswarup Mukhopadhyay
ENZYMES AND PROTEINS
Polyphosphate Synthetic Activity of Polyphosphate:AMP Phosphotransferase in Acinetobacter johnsonii 210A
Hiromichi Itoh, Toshikazu Shiba

Genetics and Molecular Biology

GENETICS AND MOLECULAR BIOLOGY
A Novel p-Nitrophenol Degradation Gene Cluster from a Gram-Positive Bacterium, Rhodococcus opacus SAO101
Wataru Kitagawa, Nobutada Kimura, Yoichi Kamagata
GENETICS AND MOLECULAR BIOLOGY
PspG, a New Member of the Yersinia enterocolitica Phage Shock Protein Regulon
Rebecca C. Green, Andrew J. Darwin
GENETICS AND MOLECULAR BIOLOGY
Identification of the Protease and the Turnover Signal Responsible for Cell Cycle-Dependent Degradation of the Caulobacter FliF Motor Protein
Björn Grünenfelder, Sherif Tawfilis, Stefanie Gehrig, Magne Østerås, Daniel Eglin, Urs Jenal
GENETICS AND MOLECULAR BIOLOGY
Circadian Rhythms in the Thermophilic Cyanobacterium Thermosynechococcus elongatus: Compensation of Period Length over a Wide Temperature Range
Kiyoshi Onai, Megumi Morishita, Shino Itoh, Kazuhisa Okamoto, Masahiro Ishiura
GENETICS AND MOLECULAR BIOLOGY
The Global Regulator Genes from Biocontrol Strain Serratia plymuthica IC1270: Cloning, Sequencing, and Functional Studies
Marianna Ovadis, Xiaoguang Liu, Sagi Gavriel, Zafar Ismailov, Ilan Chet, Leonid Chernin
GENETICS AND MOLECULAR BIOLOGY
A Type II Protein Secretory Pathway Required for Levansucrase Secretion by Gluconacetobacter diazotrophicus
Juan G. Arrieta, Mailin Sotolongo, Carmen Menéndez, Dubiel Alfonso, Luis E. Trujillo, Melvis Soto, Ricardo Ramírez, Lázaro Hernández
GENETICS AND MOLECULAR BIOLOGY
The Homogentisate Pathway: a Central Catabolic Pathway Involved in the Degradation of l-Phenylalanine, l-Tyrosine, and 3-Hydroxyphenylacetate in Pseudomonas putida
Elsa Arias-Barrau, Elías R. Olivera, José M. Luengo, Cristina Fernández, Beatriz Galán, José L. García, Eduardo Díaz, Baltasar Miñambres
GENETICS AND MOLECULAR BIOLOGY
Expression of a Functional Secreted YopN-TyeA Hybrid Protein in Yersinia pestis Is the Result of a +1 Translational Frameshift Event
Franco Ferracci, James B. Day, Heather J. Ezelle, Gregory V. Plano
GENETICS AND MOLECULAR BIOLOGY
Evolution of the Helicobacter pylori Vacuolating Cytotoxin in a Human Stomach
Francisco Aviles-Jimenez, Darren P. Letley, Gerardo Gonzalez-Valencia, Nina Salama, Javier Torres, John C. Atherton

Genomics and Proteomics

Genomics and Proteomics
Systematic Mutagenesis of the Escherichia coli Genome
Yisheng Kang, Tim Durfee, Jeremy D. Glasner, Yu Qiu, David Frisch, Kelly M. Winterberg, Frederick R. Blattner
Genomics and Proteomics
Comparative Whole-Genome Hybridization Reveals Genomic Islands in Brucella Species
Gireesh Rajashekara, Jeremy D. Glasner, David A. Glover, Gary A. Splitter

Molecular Biology of Pathogens

MOLECULAR BIOLOGY OF PATHOGENS
Fibronectin Binding to the Salmonella enterica Serotype Typhimurium ShdA Autotransporter Protein Is Inhibited by a Monoclonal Antibody Recognizing the A3 Repeat
Robert A. Kingsley, Daad Abi Ghanem, Nahum Puebla-Osorio, A. Marijke Keestra, Luc Berghman, Andreas J. Bäumler
MOLECULAR BIOLOGY OF PATHOGENS
Induction of a Novel Class of Diacylglycerol Acyltransferases and Triacylglycerol Accumulation in Mycobacterium tuberculosis as It Goes into a Dormancy-Like State in Culture
Jaiyanth Daniel, Chirajyoti Deb, Vinod S. Dubey, Tatiana D. Sirakova, Bassam Abomoelak, Hector R. Morbidoni, Pappachan E. Kolattukudy
MOLECULAR BIOLOGY OF PATHOGENS
Cloning Serratia entomophila Antifeeding Genes—a Putative Defective Prophage Active against the Grass Grub Costelytra zealandica
Mark R. H. Hurst, Travis R. Glare, Trevor A. Jackson
MOLECULAR BIOLOGY OF PATHOGENS
The ompU Paralogue vca1008 Is Required for Virulence of Vibrio cholerae
Carlos G. Osorio, Hector Martinez-Wilson, Andrew Camilli

Physiology and Metabolism

PHYSIOLOGY AND METABOLISM
Two Biosynthetic Pathways for Aromatic Amino Acids in the Archaeon Methanococcus maripaludis
Iris Porat, Brian W. Waters, Quincy Teng, William B. Whitman
PHYSIOLOGY AND METABOLISM
Characterization of the 3-O-Methylgallate Dioxygenase Gene and Evidence of Multiple 3-O-Methylgallate Catabolic Pathways in Sphingomonas paucimobilis SYK-6
Daisuke Kasai, Eiji Masai, Keisuke Miyauchi, Yoshihiro Katayama, Masao Fukuda

Gene Regulation

GENE REGULATION
6S RNA Function Enhances Long-Term Cell Survival
Amy E. Trotochaud, Karen M. Wassarman
GENE REGULATION
Cellular Levels of trp RNA-Binding Attenuation Protein in Bacillus subtilis
Barbara C. McCabe, Paul Gollnick

Population Genetics and Evolution

POPULATION GENETICS AND EVOLUTION
Intraspecific Phylogeny and Lineage Group Identification Based on the prfA Virulence Gene Cluster of Listeria monocytogenes†
Todd J. Ward, Lisa Gorski, Monica K. Borucki, Robert E. Mandrell, Jan Hutchins, Kitty Pupedis
POPULATION GENETICS AND EVOLUTION
DNA Microarray Analysis of Genome Dynamics in Yersinia pestis: Insights into Bacterial Genome Microevolution and Niche Adaptation
Dongsheng Zhou, Yanping Han, Yajun Song, Zongzhong Tong, Jin Wang, Zhaobiao Guo, Decui Pei, Xin Pang, Junhui Zhai, Min Li, Baizhong Cui, Zhizhen Qi, Lixia Jin, Ruixia Dai, Zongmin Du, Jingyue Bao, Xiuqing Zhang, Jun Yu, Jian Wang, Peitang Huang, Ruifu Yang
POPULATION GENETICS AND EVOLUTION
Genetics of Metabolic Variations between Yersinia pestis Biovars and the Proposal of a New Biovar, microtus
Dongsheng Zhou, Zongzhong Tong, Yajun Song, Yanping Han, Decui Pei, Xin Pang, Junhui Zhai, Min Li, Baizhong Cui, Zhizhen Qi, Lixia Jin, Ruixia Dai, Zongmin Du, Jin Wang, Zhaobiao Guo, Jian Wang, Peitang Huang, Ruifu Yang

Bacteriophages, Transposons, and Plasmids

Bacteriophages, Transposons, and Plasmids
Replication of Enterococcus faecalis Pheromone-Responding Plasmid pAD1: Location of the Minimal Replicon and oriV Site and RepA Involvement in Initiation of Replication
Maria Victoria Francia, Shuhei Fujimoto, Patricia Tille, Keith E. Weaver, Don B. Clewell
Bacteriophages, Transposons, and Plasmids
Nucleotide Sequence and Evolution of the Five-Plasmid Complement of the Phytopathogen Pseudomonas syringae pv. maculicola ES4326
John Stavrinides, David S. Guttman

Microbial Communities and Interactions

MICROBIAL COMMUNITIES AND INTERACTIONS
A Movable Surface: Formation of Yersinia sp. Biofilms on Motile Caenorhabditis elegans
Li Tan, Creg Darby

Structural Biology

STRUCTURAL BIOLOGY
A Second Lysine-Specific Serine Protease from Lysobacter sp. Strain IB-9374
Shigeru Chohnan, Kentaro Shiraki, Kiyonobu Yokota, Makoto Ohshima, Natsuki Kuroiwa, Kashfia Ahmed, Takeharu Masaki, Fumio Sakiyama

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Table of Contents

Guest Commentaries

Dialog

Signal Transduction

Microbial Cell Biology

Enzymes and Proteins

Genetics and Molecular Biology

Genomics and Proteomics

Molecular Biology of Pathogens

Physiology and Metabolism

Gene Regulation

Population Genetics and Evolution

Bacteriophages, Transposons, and Plasmids

Microbial Communities and Interactions

Structural Biology

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