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Table of Contents

July 1, 2007; Volume 189,Issue 13

Minireviews

  • MINIREVIEWS
    Conversion of Cobinamide into Adenosylcobamide in Bacteria and Archaea
    Jorge C. Escalante-Semerena

Molecular Biology of Pathogens

  • MOLECULAR BIOLOGY OF PATHOGENS
    A Copper-Activated Two-Component System Interacts with Zinc and Imipenem Resistance in Pseudomonas aeruginosa
    Olivier Caille, Claude Rossier, Karl Perron
  • MOLECULAR BIOLOGY OF PATHOGENS
    Differential Regulation of ponA and pilMNOPQ Expression by the MtrR Transcriptional Regulatory Protein in Neisseria gonorrhoeae
    Jason P. Folster, Vijaya Dhulipala, Robert A. Nicholas, William M. Shafer
  • MOLECULAR BIOLOGY OF PATHOGENS
    Identification of the Missing trans-Acting Enoyl Reductase Required for Phthiocerol Dimycocerosate and Phenolglycolipid Biosynthesis in Mycobacterium tuberculosis
    Roxane Siméone, Patricia Constant, Christophe Guilhot, Mamadou Daffé, Christian Chalut
  • MOLECULAR BIOLOGY OF PATHOGENS
    In Vivo-Selected Mutations in Methyl-Directed Mismatch Repair Suppress the Virulence Attenuation of Salmonella dam Mutant Strains following Intraperitoneal, but Not Oral, Infection of Naïve Mice
    Douglas M. Heithoff, Golnaz Badie, Steven M. Julio, Elena Y. Enioutina, Raymond A. Daynes, Robert L. Sinsheimer, Michael J. Mahan
  • MOLECULAR BIOLOGY OF PATHOGENS
    Contribution of the Mannan Backbone of Cryptococcal Glucuronoxylomannan and a Glycolytic Enzyme of Staphylococcus aureus to Contact-Mediated Killing of Cryptococcus neoformans
    Reiko Ikeda, Fumito Saito, Miki Matsuo, Kenji Kurokawa, Kazuhisa Sekimizu, Masashi Yamaguchi, Susumu Kawamoto
  • MOLECULAR BIOLOGY OF PATHOGENS
    Proteomic Identification of a Novel Anaplasma phagocytophilum DNA Binding Protein That Regulates a Putative Transcription Factor
    Xueqi Wang, Takane Kikuchi, Yasuko Rikihisa
  • MOLECULAR BIOLOGY OF PATHOGENS
    Release of the Lipopolysaccharide Deacylase PagL from Latency Compensates for a Lack of Lipopolysaccharide Aminoarabinose Modification-Dependent Resistance to the Antimicrobial Peptide Polymyxin B in Salmonella enterica
    Kiyoshi Kawasaki, Kotaro China, Masahiro Nishijima

Population Genetics and Evolution

  • POPULATION GENETICS AND EVOLUTION
    A Robust Species Tree for the Alphaproteobacteria
    Kelly P. Williams, Bruno W. Sobral, Allan W. Dickerman

Gene Regulation

  • GENE REGULATION
    Delineation of the Salmonella enterica Serovar Typhimurium HilA Regulon through Genome-Wide Location and Transcript Analysis
    Inge M. V. Thijs, Sigrid C. J. De Keersmaecker, Abeer Fadda, Kristof Engelen, Hui Zhao, Michael McClelland, Kathleen Marchal, Jos Vanderleyden
  • GENE REGULATION
    Multiple Controls Regulate the Expression of mobE, an HNH Homing Endonuclease Gene Embedded within a Ribonucleotide Reductase Gene of Phage Aeh1
    Ewan A. Gibb, David R. Edgell
  • GENE REGULATION
    The Extracytoplasmic Function-Type Sigma Factor SigM of Corynebacterium glutamicum ATCC 13032 Is Involved in Transcription of Disulfide Stress-Related Genes
    Diana Nakunst, Christof Larisch, Andrea T. Hüser, Andreas Tauch, Alfred Pühler, Jörn Kalinowski
  • GENE REGULATION
    A Single, Specific Thymine Mutation in the ComK-Binding Site Severely Decreases Binding and Transcription Activation by the Competence Transcription Factor ComK of Bacillus subtilis
    Kim A. Susanna, Aleksandra M. Mironczuk, Wiep Klaas Smits, Leendert W. Hamoen, Oscar P. Kuipers
  • GENE REGULATION
    Roles of rapH and rapG in Positive Regulation of Rapamycin Biosynthesis in Streptomyces hygroscopicus
    Enej Kuščer, Nigel Coates, Iain Challis, Matt Gregory, Barrie Wilkinson, Rose Sheridan, Hrvoje Petković
  • GENE REGULATION
    Genomic SELEX Search for Target Promoters under the Control of the PhoQP-RstBA Signal Relay Cascade
    Hiroshi Ogasawara, Akiko Hasegawa, Emi Kanda, Takenori Miki, Kaneyoshi Yamamoto, Akira Ishihama
  • GENE REGULATION
    Translational Regulation of the Escherichia coli Stress Factor RpoS: a Role for SsrA and Lon
    Caroline Ranquet, Susan Gottesman
  • GENE REGULATION
    Differential Expression of the Three Multicopper Oxidases from Myxococcus xanthus
    María Celestina Sánchez-Sutil, Nuria Gómez-Santos, Aurelio Moraleda-Muñoz, Lígia O. Martins, Juana Pérez, José Muñoz-Dorado

Genetics and Molecular Biology

  • GENETICS AND MOLECULAR BIOLOGY
    Genetic Dissection of Specificity Determinants in the Interaction of HPr with Enzymes II of the Bacterial Phosphoenolpyruvate:Sugar Phosphotransferase System in Escherichia coli
    Birte Reichenbach, Daniel A. Breustedt, Jörg Stülke, Bodo Rak, Boris Görke
  • GENETICS AND MOLECULAR BIOLOGY
    Silencing Essential Protein Secretion in Mycobacterium smegmatis by Using Tetracycline Repressors
    Xinzheng V. Guo, Mercedes Monteleone, Marcus Klotzsche, Annette Kamionka, Wolfgang Hillen, Miriam Braunstein, Sabine Ehrt, Dirk Schnappinger
  • GENETICS AND MOLECULAR BIOLOGY
    Role of Escherichia coli DNA Polymerase I in Conferring Viability upon the dnaN159 Mutant Strain
    Robert W. Maul, Laurie H. Sanders, James B. Lim, Rosemary Benitez, Mark D. Sutton
  • GENETICS AND MOLECULAR BIOLOGY
    Molecular Characterization and Subcellular Localization of Macrophage Infectivity Potentiator, a Chlamydia trachomatis Lipoprotein
    Laurence Neff, Sawsan Daher, Patrick Muzzin, Ursula Spenato, Fazil Gülaçar, Cem Gabay, Sylvette Bas
  • GENETICS AND MOLECULAR BIOLOGY
    Additive Effects of SbcCD and PolX Deficiencies in the In Vivo Repair of DNA Double-Strand Breaks in Deinococcus radiodurans
    Esma Bentchikou, Pascale Servant, Geneviève Coste, Suzanne Sommer
  • GENETICS AND MOLECULAR BIOLOGY
    YbxF, a Protein Associated with Exponential-Phase Ribosomes in Bacillus subtilis
    Luděk Sojka, Vladimír Fučík, Libor Krásný, Ivan Barvík, Jiří Jonák
  • GENETICS AND MOLECULAR BIOLOGY
    Structure-Based Functional Analysis of the Replication Protein of Plasmid R6K: Key Amino Acids at the π/DNA Interface
    Selvi Kunnimalaiyaan, Sheryl A. Rakowski, Marcin Filutowicz

Genomics and Proteomics

  • Genomics and Proteomics
    Characterization of a Novel Bile-Inducible Operon Encoding a Two-Component Regulatory System in Lactobacillus acidophilus
    Erika A. Pfeiler, M. Andrea Azcarate-Peril, Todd R. Klaenhammer
  • Genomics and Proteomics
    Genetic Diversity of Toxigenic and Nontoxigenic Vibrio cholerae Serogroups O1 and O139 Revealed by Array-Based Comparative Genomic Hybridization
    Bo Pang, Meiying Yan, Zhigang Cui, Xiaofen Ye, Baowei Diao, Yonghong Ren, Shouyi Gao, Liang Zhang, Biao Kan
  • Genomics and Proteomics
    Comparative Genome Analysis of Four Magnetotactic Bacteria Reveals a Complex Set of Group-Specific Genes Implicated in Magnetosome Biomineralization and Function
    Michael Richter, Michael Kube, Dennis A. Bazylinski, Thierry Lombardot, Frank Oliver Glöckner, Richard Reinhardt, Dirk Schüler

Physiology and Metabolism

  • PHYSIOLOGY AND METABOLISM
    A Polyomic Approach To Elucidate the Fluoranthene-Degradative Pathway in Mycobacterium vanbaalenii PYR-1
    Ohgew Kweon, Seong-Jae Kim, Richard C. Jones, James P. Freeman, Michael D. Adjei, Ricky D. Edmondson, Carl E. Cerniglia
  • PHYSIOLOGY AND METABOLISM
    Levels of Ca2+-Dipicolinic Acid in Individual Bacillus Spores Determined Using Microfluidic Raman Tweezers
    Shu-shi Huang, De Chen, Patricia L. Pelczar, Venkata Ramana Vepachedu, Peter Setlow, Yong-qing Li
  • PHYSIOLOGY AND METABOLISM
    Genes, Enzymes, and Regulation of para-Cresol Metabolism in Geobacter metallireducens
    Franziska Peters, Dimitri Heintz, Jörg Johannes, Alain van Dorsselaer, Matthias Boll
  • PHYSIOLOGY AND METABOLISM
    l-Sorbose Reductase and Its Transcriptional Regulator Involved in l-Sorbose Utilization of Gluconobacter frateurii
    Wichai Soemphol, Hirohide Toyama, Duangtip Moonmangmee, Osao Adachi, Kazunobu Matsushita
  • PHYSIOLOGY AND METABOLISM
    Conversion of Flavodoxin from Holoenzyme to Apoprotein during Growth Phase Changes in Helicobacter pylori
    Hirofumi Shimomura, Shunji Hayashi, Kenji Yokota, Keiji Oguma, Yoshikazu Hirai
  • PHYSIOLOGY AND METABOLISM
    Quorum Sensing Regulates Denitrification in Pseudomonas aeruginosa PAO1
    Masanori Toyofuku, Nobuhiko Nomura, Tatsuya Fujii, Naoki Takaya, Hideaki Maseda, Isao Sawada, Toshiaki Nakajima, Hiroo Uchiyama

Enzymes and Proteins

  • ENZYMES AND PROTEINS
    Deletion and Substitution Analysis of the Escherichia coli TonB Q160 Region
    Hema Vakharia-Rao, Kyle A. Kastead, Marina I. Savenkova, Charles M. Bulathsinghala, Kathleen Postle
  • ENZYMES AND PROTEINS
    Flavodoxin:Quinone Reductase (FqrB): a Redox Partner of Pyruvate:Ferredoxin Oxidoreductase That Reversibly Couples Pyruvate Oxidation to NADPH Production in Helicobacter pylori and Campylobacter jejuni
    Martin St. Maurice, Nunilo Cremades, Matthew A. Croxen, Gary Sisson, Javier Sancho, Paul S. Hoffman
  • ENZYMES AND PROTEINS
    A Novel Cell Surface-Anchored Cellulose-Binding Protein Encoded by the sca Gene Cluster of Ruminococcus flavefaciens
    Marco T. Rincon, Tadej Cepeljnik, Jennifer C. Martin, Yoav Barak, Raphael Lamed, Edward A. Bayer, Harry J. Flint
  • ENZYMES AND PROTEINS
    Specific Bonds between an Iron Oxide Surface and Outer Membrane Cytochromes MtrC and OmcA from Shewanella oneidensis MR-1
    Brian H. Lower, Liang Shi, Ruchirej Yongsunthon, Timothy C. Droubay, David E. McCready, Steven K. Lower

Microbial Cell Biology

  • Microbial Cell Biology
    An Antibiotic-Inducible Cell Wall-Associated Protein That Protects Bacillus subtilis from Autolysis
    Letal I. Salzberg, John D. Helmann
  • Microbial Cell Biology
    Predation by Bdellovibrio bacteriovorus HD100 Requires Type IV Pili
    Katy J. Evans, Carey Lambert, R. Elizabeth Sockett
  • Microbial Cell Biology
    The Oxidoreductase DsbA Plays a Key Role in the Ability of the Crohn's Disease-Associated Adherent-Invasive Escherichia coli Strain LF82 To Resist Macrophage Killing
    Marie-Agnès Bringer, Nathalie Rolhion, Anne-Lise Glasser, Arlette Darfeuille-Michaud

Bacteriophages, Transposons, and Plasmids

  • Bacteriophages, Transposons, and Plasmids
    Clocking Out: Modeling Phage-Induced Lysis of Escherichia coli
    Gillian L. Ryan, Andrew D. Rutenberg
  • Bacteriophages, Transposons, and Plasmids
    Intracellular Parasitism of Chlamydiae: Specific Infectivity of Chlamydiaphage Chp2 in Chlamydophila abortus
    R. J. Skilton, L. T. Cutcliffe, M. A. Pickett, P. R. Lambden, B. A. Fane, I. N. Clarke

Microbial Communities and Interactions

  • MICROBIAL COMMUNITIES AND INTERACTIONS
    Environmental Regulation of Pseudomonas aeruginosa PAO1 Las and Rhl Quorum-Sensing Systems
    Kangmin Duan, Michael G. Surette
  • MICROBIAL COMMUNITIES AND INTERACTIONS
    Bacillus subtilis Pellicle Formation Proceeds through Genetically Defined Morphological Changes
    Kazuo Kobayashi
  • MICROBIAL COMMUNITIES AND INTERACTIONS
    Characterization of a Pseudomonas putida Rough Variant Evolved in a Mixed-Species Biofilm with Acinetobacter sp. Strain C6
    Susse Kirkelund Hansen, Janus A. J. Haagensen, Morten Gjermansen, Thomas Martini Jørgensen, Tim Tolker-Nielsen, Søren Molin
  • MICROBIAL COMMUNITIES AND INTERACTIONS
    Diffusible Signal Factor-Dependent Cell-Cell Signaling and Virulence in the Nosocomial Pathogen Stenotrophomonas maltophilia
    Yvonne Fouhy, Karl Scanlon, Katherine Schouest, Charles Spillane, Lisa Crossman, Matthew B. Avison, Robert P. Ryan, J. Maxwell Dow

Errata

  • Erratum
    Whole-Genome Analysis of the Methyl tert-Butyl Ether-Degrading Beta-Proteobacterium Methylibium petroleiphilum PM1
    Staci R. Kane, Anu Y. Chakicherla, Patrick S. G. Chain, Radomir Schmidt, Maria W. Shin, Tina C. Legler, Kate M. Scow, Frank W. Larimer, Susan M. Lucas, Paul M. Richardson, Krassimira R. Hristova

Author's Correction

  • AUTHOR'S CORRECTION
    Global Analysis of the Mycobacterium tuberculosis Zur (FurB) Regulon
    Anna Maciag, Elisa Dainese, G. Marcela Rodriguez, Anna Milano, Roberta Provvedi, Maria R. Pasca, Issar Smith, Giorgio Palù, Giovanna Riccardi, Riccardo Manganelli
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Journal of Bacteriology: 189 (13)

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volume 189, issue 13
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  • Bacteriophages, Transposons, and Plasmids
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  • Type II Toxin-Antitoxin Systems: Evolution and Revolutions
  • Posttranscriptional Regulation of tnaA by Protein-RNA Interaction Mediated by Ribosomal Protein L4 in Escherichia coli
  • Light Modulates the Physiology of Nonphototrophic Actinobacteria
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