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Table of Contents

December 15, 2007; Volume 189,Issue 24

Guest Commentaries

  • GUEST COMMENTARY
    Gene-Specific Regulation by a Transcript Cleavage Factor: Facilitating Promoter Escape
    Ann Hochschild

Gene Regulation

  • GENE REGULATION
    Analysis of Promoter Targets for Escherichia coli Transcription Elongation Factor GreA In Vivo and In Vitro
    Ekaterina Stepanova, Jookyung Lee, Maria Ozerova, Ekaterina Semenova, Kirill Datsenko, Barry L. Wanner, Konstantin Severinov, Sergei Borukhov
  • GENE REGULATION
    Regulation of d-Xylose Metabolism in Caulobacter crescentus by a LacI-Type Repressor
    Craig Stephens, Beat Christen, Kelly Watanabe, Thomas Fuchs, Urs Jenal
  • GENE REGULATION
    Characterization of MazFSa, an Endoribonuclease from Staphylococcus aureus
    Zhibiao Fu, Niles P. Donegan, Guido Memmi, Ambrose L. Cheung

Genomics and Proteomics

  • Genomics and Proteomics
    Comparative Genomic Hybridization Detects Secondary Chromosomal Deletions in Escherichia coli K-12 MG1655 Mutants and Highlights Instability in the flhDC Region
    Jon L. Hobman, Mala D. Patel, G. Aida Hidalgo-Arroyo, S. James L. Cariss, Matthew B. Avison, Charles W. Penn, Chrystala Constantinidou
  • Genomics and Proteomics
    Single-Molecule Force Spectroscopy of Mycobacterial Adhesin-Adhesin Interactions
    Claire Verbelen, Dominique Raze, Frédérique Dewitte, Camille Locht, Yves F. Dufrêne
  • Genomics and Proteomics
    Response of Desulfovibrio vulgaris to Alkaline Stress
    Sergey Stolyar, Qiang He, Marcin P. Joachimiak, Zhili He, Zamin Koo Yang, Sharon E. Borglin, Dominique C. Joyner, Katherine Huang, Eric Alm, Terry C. Hazen, Jizhong Zhou, Judy D. Wall, Adam P. Arkin, David A. Stahl
  • Genomics and Proteomics
    A Horizontal Gene Transfer Event Defines Two Distinct Groups within Burkholderia pseudomallei That Have Dissimilar Geographic Distributions
    Apichai Tuanyok, Raymond K. Auerbach, Thomas S. Brettin, David C. Bruce, A. Christine Munk, J. Chris Detter, Talima Pearson, Heidie Hornstra, Rasana W. Sermswan, Vanaporn Wuthiekanun, Sharon J. Peacock, Bart J. Currie, Paul Keim, David M. Wagner
  • Genomics and Proteomics
    Evolution and Functional Characterization of the RH50 Gene from the Ammonia-Oxidizing Bacterium Nitrosomonas europaea
    Baya Cherif-Zahar, Anne Durand, Ingo Schmidt, Nabila Hamdaoui, Ivan Matic, Mike Merrick, Giorgio Matassi

Genetics and Molecular Biology

  • GENETICS AND MOLECULAR BIOLOGY
    The Myxococcus xanthus Developmental Program Can Be Delayed by Inhibition of DNA Replication
    Christopher J. Rosario, Mitchell Singer
  • GENETICS AND MOLECULAR BIOLOGY
    Molecular Basis of the Defective Heat Stress Response in Mycobacterium leprae
    Diana L. Williams, Tana L. Pittman, Mike Deshotel, Sandra Oby-Robinson, Issar Smith, Robert Husson
  • GENETICS AND MOLECULAR BIOLOGY
    Control of the Transcription of a Short Gene Encoding a Cyclic Peptide in Streptococcus thermophilus: a New Quorum-Sensing System?
    Mariam Ibrahim, Alain Guillot, Francoise Wessner, Florence Algaron, Colette Besset, Pascal Courtin, Rozenn Gardan, Véronique Monnet
  • GENETICS AND MOLECULAR BIOLOGY
    Cohabitation of Two Different lexA Regulons in Pseudomonas putida
    Marc Abella, Susana Campoy, Ivan Erill, Fernando Rojo, Jordi Barbé
  • GENETICS AND MOLECULAR BIOLOGY
    Identification and Characterization of the dps Promoter of Mycobacterium smegmatis: Promoter Recognition by Stress-Specific Extracytoplasmic Function Sigma Factors σH and σF
    Rakhi Pait Chowdhury, Surbhi Gupta, Dipankar Chatterji
  • GENETICS AND MOLECULAR BIOLOGY
    Transient Erythromycin Resistance Phenotype Associated with Peptidyl-tRNA Drop-Off on Early UGG and GGG Codons
    Mirjana Mačvanin, Ernesto I. Gonzalez de Valdivia, David H. Ardell, Leif A. Isaksson
  • GENETICS AND MOLECULAR BIOLOGY
    Transmembrane Helix 12 of the Staphylococcus aureus Multidrug Transporter QacA Lines the Bivalent Cationic Drug Binding Pocket
    Karl A. Hassan, Ronald A. Skurray, Melissa H. Brown
  • GENETICS AND MOLECULAR BIOLOGY
    YhbO Protects Cells against Multiple Stresses
    Jad Abdallah, Teresa Caldas, Fatoum Kthiri, Renée Kern, Gilbert Richarme

Plant Microbiology

  • Plant Microbiology
    Multiple Superoxide Dismutases in Agrobacterium tumefaciens: Functional Analysis, Gene Regulation, and Influence on Tumorigenesis
    Panatda Saenkham, Warawan Eiamphungporn, Stephen K. Farrand, Paiboon Vattanaviboon, Skorn Mongkolsuk
  • Plant Microbiology
    New Target Genes Controlled by the Bradyrhizobium japonicum Two-Component Regulatory System RegSR
    Andrea Lindemann, Annina Moser, Gabriella Pessi, Felix Hauser, Markus Friberg, Hauke Hennecke, Hans-Martin Fischer
  • Plant Microbiology
    Influence of the Poly-3-Hydroxybutyrate (PHB) Granule-Associated Proteins (PhaP1 and PhaP2) on PHB Accumulation and Symbiotic Nitrogen Fixation in Sinorhizobium meliloti Rm1021
    Chunxia Wang, Xiaoyan Sheng, Raymie C. Equi, Maria A. Trainer, Trevor C. Charles, Bruno W. S. Sobral

Enzymes and Proteins

  • ENZYMES AND PROTEINS
    Full Activation of Enterococcus faecalis Gelatinase by a C-Terminal Proteolytic Cleavage
    Maria Florencia Del Papa, Lynn E. Hancock, Vinai C. Thomas, Marta Perego
  • ENZYMES AND PROTEINS
    Functional Analysis of the M.HpyAIV DNA Methyltransferase of Helicobacter pylori
    Anna Skoglund, Britta Björkholm, Christina Nilsson, Anders F. Andersson, Cecilia Jernberg, Katja Schirwitz, Cristofer Enroth, Margareta Krabbe, Lars Engstrand
  • ENZYMES AND PROTEINS
    Functional Organization of the Autotransporter Adhesin Involved in Diffuse Adherence
    Marie-Ève Charbonneau, Michael Mourez
  • ENZYMES AND PROTEINS
    Orotate Phosphoribosyltransferase from Corynebacterium ammoniagenes Lacking a Conserved Lysine
    Xing Wang, Cuiqing Ma, Xiuwen Wang, Ping Xu
  • ENZYMES AND PROTEINS
    Crystal Structure of the NADH:Quinone Oxidoreductase WrbA from Escherichia coli
    Susana L. A. Andrade, Eric V. Patridge, James G. Ferry, Oliver Einsle

Physiology and Metabolism

  • PHYSIOLOGY AND METABOLISM
    Structure, Function, and Regulation of the Aldouronate Utilization Gene Cluster from Paenibacillus sp. Strain JDR-2
    Virginia Chow, Guang Nong, James F. Preston
  • PHYSIOLOGY AND METABOLISM
    O-Linked Glycosylation Ensures the Normal Conformation of the Autotransporter Adhesin Involved in Diffuse Adherence
    Marie-Ève Charbonneau, Victoria Girard, Anastasia Nikolakakis, Manuel Campos, Frédéric Berthiaume, France Dumas, François Lépine, Michael Mourez
  • PHYSIOLOGY AND METABOLISM
    Unusual Starch Degradation Pathway via Cyclodextrins in the Hyperthermophilic Sulfate-Reducing Archaeon Archaeoglobus fulgidus Strain 7324
    Antje Labes, Peter Schönheit
  • PHYSIOLOGY AND METABOLISM
    Cysteine Metabolism-Related Genes and Bacterial Resistance to Potassium Tellurite
    Derie E. Fuentes, Eugenia L. Fuentes, Miguel E. Castro, José M. Pérez, Manuel A. Araya, Thomas G. Chasteen, Sergio E. Pichuantes, Claudio C. Vásquez
  • PHYSIOLOGY AND METABOLISM
    Regulation of Multidrug Efflux Systems Involved in Multidrug and Metal Resistance of Salmonella enterica Serovar Typhimurium
    Kunihiko Nishino, Eiji Nikaido, Akihito Yamaguchi
  • PHYSIOLOGY AND METABOLISM
    Identification of a Fourth Formate Dehydrogenase in Methylobacterium extorquens AM1 and Confirmation of the Essential Role of Formate Oxidation in Methylotrophy
    Ludmila Chistoserdova, Gregory J. Crowther, Julia A. Vorholt, Elizabeth Skovran, Jean-Charles Portais, Mary E. Lidstrom

Molecular Biology of Pathogens

  • MOLECULAR BIOLOGY OF PATHOGENS
    Direct Transcriptional Control of the Plasminogen Activator Gene of Yersinia pestis by the Cyclic AMP Receptor Protein
    Tae-Jong Kim, Sadhana Chauhan, Vladimir L. Motin, Ee-Been Goh, Michele M. Igo, Glenn M. Young
  • MOLECULAR BIOLOGY OF PATHOGENS
    Characterization of the Mycobacterium tuberculosis 4-Diphosphocytidyl-2-C-Methyl-d-Erythritol Synthase: Potential for Drug Development
    Hyungjin Eoh, Amanda C. Brown, Lori Buetow, William N. Hunter, Tanya Parish, Devinder Kaur, Patrick J. Brennan, Dean C. Crick
  • MOLECULAR BIOLOGY OF PATHOGENS
    A Conserved Glycine Residue of Trimeric Autotransporter Domains Plays a Key Role in Yersinia Adhesin A Autotransport
    Ulrike Grosskinsky, Monika Schütz, Michaela Fritz, Yvonne Schmid, Marina C. Lamparter, Pawel Szczesny, Andrei N. Lupas, Ingo B. Autenrieth, Dirk Linke
  • MOLECULAR BIOLOGY OF PATHOGENS
    Burkholderia cenocepacia C5424 Produces a Pigment with Antioxidant Properties Using a Homogentisate Intermediate
    Karen E. Keith, Lauren Killip, Panqing He, Graham R. Moran, Miguel A. Valvano

Microbial Cell Biology

  • Microbial Cell Biology
    Isolation of Cold-Sensitive yidC Mutants Provides Insights into the Substrate Profile of the YidC Insertase and the Importance of Transmembrane 3 in YidC Function
    Jijun Yuan, Gregory J. Phillips, Ross E. Dalbey
  • Microbial Cell Biology
    Streptomyces coelicolor Genes ftsL and divIC Play a Role in Cell Division but Are Dispensable for Colony Formation
    Jennifer A. Bennett, Rachel M. Aimino, Joseph R. McCormick
  • Microbial Cell Biology
    The Division Inhibitor EzrA Contains a Seven-Residue Patch Required for Maintaining the Dynamic Nature of the Medial FtsZ Ring
    Daniel P. Haeusser, Anna Cristina Garza, Amy Z. Buscher, Petra Anne Levin
  • Microbial Cell Biology
    Mapping Critical Interactive Sites within the Periplasmic Domain of the Vibrio cholerae Type II Secretion Protein EpsM
    Tanya L. Johnson, Maria E. Scott, Maria Sandkvist

Bacteriophages, Transposons, and Plasmids

  • Bacteriophages, Transposons, and Plasmids
    TrwC-Mediated Site-Specific Recombination Is Controlled by Host Factors Altering Local DNA Topology
    Carolina Elvira César, Matxalen Llosa
  • Bacteriophages, Transposons, and Plasmids
    Introduction of the Foreign Transposon Tn4560 in Streptomyces coelicolor Leads to Genetic Instability near the Native Insertion Sequence IS1649
    Elizabeth M. Widenbrant, Camilla M. Kao
  • Bacteriophages, Transposons, and Plasmids
    Streptomyces coelicolor Undergoes Spontaneous Chromosomal End Replacement
    Elizabeth M. Widenbrant, Hsiu-Hui Tsai, Carton W. Chen, Camilla M. Kao
  • Bacteriophages, Transposons, and Plasmids
    Transposon Tn7 Directs Transposition into the Genome of Filamentous Bacteriophage M13 Using the Element-Encoded TnsE Protein
    Jessica A. Finn, Adam R. Parks, Joseph E. Peters
  • Bacteriophages, Transposons, and Plasmids
    The Pinholin of Lambdoid Phage 21: Control of Lysis by Membrane Depolarization
    Taehyun Park, Douglas K. Struck, Chelsey A. Dankenbring, Ry Young

Microbial Communities and Interactions

  • MICROBIAL COMMUNITIES AND INTERACTIONS
    Spatial Organization of Myxococcus xanthus during Fruiting Body Formation
    Patrick D. Curtis, Rion G. Taylor, Roy D. Welch, Lawrence J. Shimkets

Population Genetics and Evolution

  • POPULATION GENETICS AND EVOLUTION
    Genetic Diversity of the Gene Cluster Encoding Longus, a Type IV Pilus of Enterotoxigenic Escherichia coli
    Oscar G. Gomez-Duarte, Sujay Chattopadhyay, Scott J. Weissman, Jorge A. Giron, James B. Kaper, Evgeni V. Sokurenko

Errata

  • ERRATA
    Transcriptional and Physiological Responses of Bradyrhizobium japonicum to Desiccation-Induced Stress
    Eddie J. Cytryn, Dipen P. Sangurdekar, John G. Streeter, William L. Franck, Woo-Suk Chang, Gary Stacey, David W. Emerich, Trupti Joshi, Dong Xu, Michael J. Sadowsky
  • ERRATA
    The Circadian Clock-Related Gene pex Regulates a Negative cis Element in the kaiA Promoter Region
    Shinsuke Kutsuna, Takao Kondo, Haruki Ikegami, Tatsuya Uzumaki, Mitsunori Katayama, Masahiro Ishiura
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Journal of Bacteriology: 189 (24)

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volume 189, issue 24
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  • Lag Phase Is a Dynamic, Organized, Adaptive, and Evolvable Period That Prepares Bacteria for Cell Division
  • Type II Toxin-Antitoxin Systems: Evolution and Revolutions
  • Posttranscriptional Regulation of tnaA by Protein-RNA Interaction Mediated by Ribosomal Protein L4 in Escherichia coli
  • Light Modulates the Physiology of Nonphototrophic Actinobacteria
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