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Table of Contents

March 1, 2007; Volume 189,Issue 5

Meeting Review

  • Meeting Review
    Salmonella: from Pathogenesis to Therapeutics
    Erin C. Boyle, Jennifer L. Bishop, Guntram A. Grassl, B. Brett Finlay

Genetics and Molecular Biology

  • GENETICS AND MOLECULAR BIOLOGY
    Probing the In Vivo Dynamics of Type I Protein Secretion Complex Association through Sensitivity to Detergents
    Sandra Cescau, Laurent Debarbieux, Cécile Wandersman
  • GENETICS AND MOLECULAR BIOLOGY
    A Suppressor of Cell Death Caused by the Loss of σE Downregulates Extracytoplasmic Stress Responses and Outer Membrane Vesicle Production in Escherichia coli
    Julie E. Button, Thomas J. Silhavy, Natividad Ruiz
  • GENETICS AND MOLECULAR BIOLOGY
    Isolation and Characterization of Dominant Mutations in the Bacillus subtilis Stressosome Components RsbR and RsbS
    Adam Reeves, W. G. Haldenwang
  • GENETICS AND MOLECULAR BIOLOGY
    Role of SpoVA Proteins in Release of Dipicolinic Acid during Germination of Bacillus subtilis Spores Triggered by Dodecylamine or Lysozyme
    Venkata Ramana Vepachedu, Peter Setlow
  • GENETICS AND MOLECULAR BIOLOGY
    Detection of a Group II Intron without an Open Reading Frame in the Alpha-Toxin Gene of Clostridium perfringens Isolated from a Broiler Chicken
    Menglin Ma, Kaori Ohtani, Tohru Shimizu, Naoaki Misawa
  • GENETICS AND MOLECULAR BIOLOGY
    Functional Analysis of PilT from the Toxic Cyanobacterium Microcystis aeruginosa PCC 7806
    Kenlee Nakasugi, Ralitza Alexova, Charles J. Svenson, Brett A. Neilan
  • GENETICS AND MOLECULAR BIOLOGY
    Characterization of the Transcriptional Activity of the Cryptic Plasmid pRN1 from Sulfolobus islandicus REN1H1 and Regulation of Its Replication Operon
    Silvia Berkner, Georg Lipps
  • GENETICS AND MOLECULAR BIOLOGY
    Specific Binding of D1 Protein Degradation Products to the psbAI Promoter in Synechococcus sp. Strain PCC 7942
    Christian Stelljes, Friederike Koenig
  • GENETICS AND MOLECULAR BIOLOGY
    Only One of Five groEL Genes Is Required for Viability and Successful Symbiosis in Sinorhizobium meliloti
    Alycia N. Bittner, Amanda Foltz, Valerie Oke
  • GENETICS AND MOLECULAR BIOLOGY
    Loss of a Universal tRNA Feature
    Chunxia Wang, Bruno W. Sobral, Kelly P. Williams
  • GENETICS AND MOLECULAR BIOLOGY
    Evolution of Mycobacterium ulcerans and Other Mycolactone-Producing Mycobacteria from a Common Mycobacterium marinum Progenitor
    Marcus J. Yip, Jessica L. Porter, Janet A. M. Fyfe, Caroline J. Lavender, Françoise Portaels, Martha Rhodes, Howard Kator, Angelo Colorni, Grant A. Jenkin, Tim Stinear
  • GENETICS AND MOLECULAR BIOLOGY
    Identification of IspC, an 86-Kilodalton Protein Target of Humoral Immune Response to Infection with Listeria monocytogenes Serotype 4b, as a Novel Surface Autolysin
    Linru Wang, Min Lin
  • GENETICS AND MOLECULAR BIOLOGY
    New Functional Identity for the DNA Uptake Sequence in Transformation and Its Presence in Transcriptional Terminators
    O. Herman Ambur, Stephan A. Frye, Tone Tønjum
  • GENETICS AND MOLECULAR BIOLOGY
    Amino Acid Residues Required for Maturation, Cell Uptake, and Processing of Translation Inhibitor Microcin C
    Teymur Kazakov, Anastasia Metlitskaya, Konstantin Severinov
  • GENETICS AND MOLECULAR BIOLOGY
    Bacteroides fragilis Synthesizes a DNA Invertase Affecting both a Local and a Distant Region
    Hazeline Roche-Hakansson, Maria Chatzidaki-Livanis, Michael J. Coyne, Laurie E. Comstock
  • GENETICS AND MOLECULAR BIOLOGY
    The Type IV Secretion System of Sinorhizobium meliloti Strain 1021 Is Required for Conjugation but Not for Intracellular Symbiosis
    Kathryn M. Jones, Javier Lloret, Joseph R. Daniele, Graham C. Walker
  • GENETICS AND MOLECULAR BIOLOGY
    An Active Nonautonomous Mobile Element in Sulfolobus islandicus REN1H1
    Silvia Berkner, Georg Lipps
  • GENETICS AND MOLECULAR BIOLOGY
    Rare Group I Intron with Insertion Sequence Element in a Bacterial Ribonucleotide Reductase Gene
    Qing Meng, Yi Zhang, Xiang-Qin Liu
  • GENETICS AND MOLECULAR BIOLOGY
    In Vitro Analysis of Rates and Spectra of Mutations in a Polymorphic Region of the Rv0746 PE_PGRS Gene of Mycobacterium tuberculosis
    Edith E. Machowski, Samantha Barichievy, Burkhard Springer, Steven I. Durbach, Valerie Mizrahi

Molecular Biology of Pathogens

  • MOLECULAR BIOLOGY OF PATHOGENS
    Identification of Mycobacterial σ Factor Binding Sites by Chromatin Immunoprecipitation Assays
    Sébastien Rodrigue, Joëlle Brodeur, Pierre-Étienne Jacques, Alain L. Gervais, Ryszard Brzezinski, Luc Gaudreau
  • MOLECULAR BIOLOGY OF PATHOGENS
    Proteomic Analysis and Identification of Streptococcus pyogenes Surface-Associated Proteins
    Anatoly Severin, Elliott Nickbarg, Joseph Wooters, Shakey A. Quazi, Yury V. Matsuka, Ellen Murphy, Ioannis K. Moutsatsos, Robert J. Zagursky, Stephen B. Olmsted
  • MOLECULAR BIOLOGY OF PATHOGENS
    Altered Levels of Salmonella DNA Adenine Methylase Are Associated with Defects in Gene Expression, Motility, Flagellar Synthesis, and Bile Resistance in the Pathogenic Strain 14028 but Not in the Laboratory Strain LT2
    Golnaz Badie, Douglas M. Heithoff, Robert L. Sinsheimer, Michael J. Mahan
  • MOLECULAR BIOLOGY OF PATHOGENS
    Repression of the Inner Membrane Lipoprotein NlpA by Rns in Enterotoxigenic Escherichia coli
    Maria D. Bodero, M. Carolina Pilonieta, George P. Munson
  • MOLECULAR BIOLOGY OF PATHOGENS
    Regulation of Sulfur Assimilation Pathways in Burkholderia cenocepacia: Identification of Transcription Factors CysB and SsuR and Their Role in Control of Target Genes
    Roksana Iwanicka-Nowicka, Agata Zielak, Anne M. Cook, Mark S. Thomas, Monika M. Hryniewicz
  • MOLECULAR BIOLOGY OF PATHOGENS
    Biosynthetic Analysis of the Petrobactin Siderophore Pathway from Bacillusanthracis
    Jung Yeop Lee, Brian K. Janes, Karla D. Passalacqua, Brian F. Pfleger, Nicholas H. Bergman, Haichuan Liu, Kristina Håkansson, Ravindranadh V. Somu, Courtney C. Aldrich, Stephen Cendrowski, Philip C. Hanna, David H. Sherman
  • MOLECULAR BIOLOGY OF PATHOGENS
    A Novel Protein, TtpC, Is a Required Component of the TonB2 Complex for Specific Iron Transport in the Pathogens Vibrio anguillarum and Vibrio cholerae
    Michiel Stork, Ben R. Otto, Jorge H. Crosa
  • MOLECULAR BIOLOGY OF PATHOGENS
    Growth Phase Regulation of Vibrio cholerae RTX Toxin Export
    Bethany Kay Boardman, Brian M. Meehan, Karla J. Fullner Satchell
  • MOLECULAR BIOLOGY OF PATHOGENS
    CapA, an Autotransporter Protein of Campylobacter jejuni, Mediates Association with Human Epithelial Cells and Colonization of the Chicken Gut
    Sami S. A. Ashgar, Neil J. Oldfield, Karl G. Wooldridge, Michael A. Jones, Greg J. Irving, David P. J. Turner, Dlawer A. A. Ala'Aldeen
  • MOLECULAR BIOLOGY OF PATHOGENS
    Role of mRNA Stability in Growth Phase Regulation of Gene Expression in the Group A Streptococcus
    Timothy C. Barnett, Julia V. Bugrysheva, June R. Scott
  • MOLECULAR BIOLOGY OF PATHOGENS
    The Alternative Sigma Factor σH Is Required for Toxin Gene Expression by Bacillus anthracis
    Maria Hadjifrangiskou, Yahua Chen, Theresa M. Koehler
  • MOLECULAR BIOLOGY OF PATHOGENS
    Evidence that RpoS (σS) in Borrelia burgdorferi Is Controlled Directly by RpoN (σ54/σN)
    Alexandra H. Smith, Jon S. Blevins, Gulnaz N. Bachlani, Xiaofeng F. Yang, Michael V. Norgard

Enzymes and Proteins

  • ENZYMES AND PROTEINS
    Characterization of the Helicase Activity and Substrate Specificity of Mycobacterium tuberculosis UvrD
    Elena Curti, Stephen J. Smerdon, Elaine O. Davis
  • ENZYMES AND PROTEINS
    PduL Is an Evolutionarily Distinct Phosphotransacylase Involved in B12-Dependent 1,2-Propanediol Degradation by Salmonella enterica Serovar Typhimurium LT2
    Yu Liu, Nicole A. Leal, Edith M. Sampson, Celeste L. V. Johnson, Gregory D. Havemann, Thomas A. Bobik
  • ENZYMES AND PROTEINS
    Characterization of a Novel d-Lyxose Isomerase from Cohnella laevoribosii RI-39 sp. nov.
    Eun-Ah Cho, Dong-Woo Lee, Yun-Hwan Cha, Sang-Jae Lee, Heung-Chae Jung, Jae-Gu Pan, Yu-Ryang Pyun
  • ENZYMES AND PROTEINS
    A Gene Cluster Involved in Degradation of Substituted Salicylates via ortho Cleavage in Pseudomonas sp. Strain MT1 Encodes Enzymes Specifically Adapted for Transformation of 4-Methylcatechol and 3-Methylmuconate
    Beatriz Cámara, Piotr Bielecki, Filip Kaminski, Vitor Martins dos Santos, Iris Plumeier, Patricia Nikodem, Dietmar H. Pieper
  • ENZYMES AND PROTEINS
    Porin Activity of Anaplasma phagocytophilum Outer Membrane Fraction and Purified P44
    Haibin Huang, Xueqi Wang, Takane Kikuchi, Yumi Kumagai, Yasuko Rikihisa
  • ENZYMES AND PROTEINS
    An Actin Homolog of the Archaeon Thermoplasma acidophilum That Retains the Ancient Characteristics of Eukaryotic Actin
    Futoshi Hara, Kan Yamashiro, Naoki Nemoto, Yoshinori Ohta, Shin-ichi Yokobori, Takuo Yasunaga, Shin-ichi Hisanaga, Akihiko Yamagishi
  • ENZYMES AND PROTEINS
    Borrelia burgdorferi BBA74, a Periplasmic Protein Associated with the Outer Membrane, Lacks Porin-Like Properties
    Vishwaroop Mulay, Melissa J. Caimano, Dionysios Liveris, Daniel C. Desrosiers, Justin D. Radolf, Ira Schwartz
  • ENZYMES AND PROTEINS
    Arylamine N-Acetyltransferase Responsible for Acetylation of 2-Aminophenols in Streptomyces griseus
    Hirokazu Suzuki, Yasuo Ohnishi, Sueharu Horinouchi
  • ENZYMES AND PROTEINS
    Role of a Conserved Membrane Glycine Residue in a Dicarboxylate Transporter from Sinorhizobium meliloti
    Maria A. Trainer, Svetlana N. Yurgel, Michael L. Kahn

Physiology and Metabolism

  • PHYSIOLOGY AND METABOLISM
    Biochemical and Genetic Analysis of the γ-Resorcylate (2,6-Dihydroxybenzoate) Catabolic Pathway in Rhizobium sp. Strain MTP-10005: Identification and Functional Analysis of Its Gene Cluster
    Masahiro Yoshida, Tadao Oikawa, Hitoshi Obata, Katsumasa Abe, Hisaaki Mihara, Nobuyoshi Esaki
  • PHYSIOLOGY AND METABOLISM
    The l-Tartrate/Succinate Antiporter TtdT (YgjE) of l-Tartrate Fermentation in Escherichia coli
    Ok Bin Kim, Gottfried Unden
  • PHYSIOLOGY AND METABOLISM
    Oxygen Reactivity of Both Respiratory Oxidases in Campylobacter jejuni: the cydAB Genes Encode a Cyanide-Resistant, Low-Affinity Oxidase That Is Not of the Cytochrome bd Type
    Rachel J. Jackson, Karen T. Elvers, Lucy J. Lee, Mark D. Gidley, Laura M. Wainwright, James Lightfoot, Simon F. Park, Robert K. Poole
  • PHYSIOLOGY AND METABOLISM
    Intracellular Copper Does Not Catalyze the Formation of Oxidative DNA Damage in Escherichia coli
    Lee Macomber, Christopher Rensing, James A. Imlay
  • PHYSIOLOGY AND METABOLISM
    Transcriptomic Analysis Reveals a Bifurcated Terephthalate Degradation Pathway in Rhodococcus sp. Strain RHA1
    Hirofumi Hara, Lindsay D. Eltis, Julian E. Davies, William W. Mohn
  • PHYSIOLOGY AND METABOLISM
    Glucosylglycerate Biosynthesis in the Deepest Lineage of the Bacteria: Characterization of the Thermophilic Proteins GpgS and GpgP from Persephonella marina
    Joana Costa, Nuno Empadinhas, Milton S. da Costa
  • PHYSIOLOGY AND METABOLISM
    The pio Operon Is Essential for Phototrophic Fe(II) Oxidation in Rhodopseudomonas palustris TIE-1
    Yongqin Jiao, Dianne K. Newman
  • PHYSIOLOGY AND METABOLISM
    The fox Operon from Rhodobacter Strain SW2 Promotes Phototrophic Fe(II) Oxidation in Rhodobacter capsulatus SB1003
    Laura R. Croal, Yongqin Jiao, Dianne K. Newman
  • PHYSIOLOGY AND METABOLISM
    Nitric Oxide in Chemostat-Cultured Escherichia coli Is Sensed by Fnr and Other Global Regulators: Unaltered Methionine Biosynthesis Indicates Lack of S Nitrosation
    Steven T. Pullan, Mark D. Gidley, Richard A. Jones, Jason Barrett, Tania M. Stevanin, Robert C. Read, Jeffrey Green, Robert K. Poole
  • PHYSIOLOGY AND METABOLISM
    Genetic Analysis of a Novel Pathway for d-Xylose Metabolism in Caulobacter crescentus
    Craig Stephens, Beat Christen, Thomas Fuchs, Vidyodhaya Sundaram, Kelly Watanabe, Urs Jenal
  • PHYSIOLOGY AND METABOLISM
    YjjG, a dUMP Phosphatase, Is Critical for Thymine Utilization by Escherichia coli K-12
    Bernard Weiss

Gene Regulation

  • GENE REGULATION
    Physiologic Effects of Forced Down-Regulation of dnaK and groEL Expression in Streptococcus mutans
    José A. Lemos, Yaima Luzardo, Robert A. Burne
  • GENE REGULATION
    Transcription from the P3 Promoter of the Bacillus subtilis spx Gene Is Induced in Response to Disulfide Stress
    Montira Leelakriangsak, Peter Zuber
  • GENE REGULATION
    Dual Negative Control of spx Transcription Initiation from the P3 Promoter by Repressors PerR and YodB in Bacillus subtilis
    Montira Leelakriangsak, Kazuo Kobayashi, Peter Zuber
  • GENE REGULATION
    Characterization of ResDE-Dependent fnr Transcription in Bacillus subtilis
    Hao Geng, Yi Zhu, Karl Mullen, Cole S. Zuber, Michiko M. Nakano
  • GENE REGULATION
    Mutations of the Act Promoter in Myxococcus xanthus
    Thomas M. A. Gronewold, Dale Kaiser
  • GENE REGULATION
    The Pseudomonas Quorum-Sensing Regulator RsaL Belongs to the Tetrahelical Superclass of H-T-H Proteins
    Giordano Rampioni, Fabio Polticelli, Iris Bertani, Karima Righetti, Vittorio Venturi, Elisabetta Zennaro, Livia Leoni
  • GENE REGULATION
    Hfq Modulates the σE-Mediated Envelope Stress Response and the σ32-Mediated Cytoplasmic Stress Response in Escherichia coli
    Eric Guisbert, Virgil A. Rhodius, Nidhi Ahuja, Emily Witkin, Carol A. Gross
  • GENE REGULATION
    Autoregulation Is Essential for Precise Temporal and Steady-State Regulation by the Bordetella BvgAS Phosphorelay
    Corinne L. Williams, Peggy A. Cotter
  • GENE REGULATION
    “Cold-Sensitive” Mutants of the Lac Repressor
    Andrew Barker, Stefan Oehler, Benno Müller-Hill
  • GENE REGULATION
    The Number of G Residues in the Bacillus subtilis pyrG Initially Transcribed Region Governs Reiterative Transcription-Mediated Regulation
    Alexander K. W. Elsholz, Casper Møller Jørgensen, Robert L. Switzer

Microbial Cell Biology

  • Microbial Cell Biology
    On Torque and Tumbling in Swimming Escherichia coli
    Nicholas C. Darnton, Linda Turner, Svetlana Rojevsky, Howard C. Berg
  • Microbial Cell Biology
    Signal Recognition Particle-Dependent Inner Membrane Targeting of the PulG Pseudopilin Component of a Type II Secretion System
    Olivera Francetic, Nienke Buddelmeijer, Shawn Lewenza, Carol A. Kumamoto, Anthony P. Pugsley
  • Microbial Cell Biology
    Export of the Pseudopilin XcpT of the Pseudomonas aeruginosa Type II Secretion System via the Signal Recognition Particle-Sec Pathway
    Jorik Arts, Ria van Boxtel, Alain Filloux, Jan Tommassen, Margot Koster
  • Microbial Cell Biology
    Identification of Genes Involved in Swarming Motility Using a Pseudomonas aeruginosa PAO1 Mini-Tn5-lux Mutant Library
    Joerg Overhage, Shawn Lewenza, Alexandra K. Marr, Robert E. W. Hancock

Microbial Communities and Interactions

  • MICROBIAL COMMUNITIES AND INTERACTIONS
    Weak Rolling Adhesion Enhances Bacterial Surface Colonization
    Brett N. Anderson, Albert M. Ding, Lina M. Nilsson, Kaoru Kusuma, Veronika Tchesnokova, Viola Vogel, Evgeni V. Sokurenko, Wendy E. Thomas
  • MICROBIAL COMMUNITIES AND INTERACTIONS
    A Stochastic Mechanism for Biofilm Formation by Mycoplasma pulmonis
    Warren L. Simmons, Jeffrey R. Bolland, James M. Daubenspeck, Kevin Dybvig
  • MICROBIAL COMMUNITIES AND INTERACTIONS
    Characterization of Colony Morphology Variants Isolated from Streptococcus pneumoniae Biofilms
    Magee Allegrucci, Karin Sauer
  • MICROBIAL COMMUNITIES AND INTERACTIONS
    Possible Nonconductive Role of Geobacter sulfurreducens Pilus Nanowires in Biofilm Formation
    Gemma Reguera, Rachael B. Pollina, Julie S. Nicoll, Derek R. Lovley

Signal Transduction

  • SIGNAL TRANSDUCTION
    Functional Analysis of Nine Putative Chemoreceptor Proteins in Sinorhizobium meliloti
    Veronika M. Meier, Paul Muschler, Birgit E. Scharf

Genomics and Proteomics

  • Genomics and Proteomics
    Complete Genome Sequence of Haemophilus somnus (Histophilus somni) Strain 129Pt and Comparison to Haemophilus ducreyi 35000HP and Haemophilus influenzae Rd
    Jean F. Challacombe, A. J. Duncan, Thomas S. Brettin, David Bruce, Olga Chertkov, J. Chris Detter, Cliff S. Han, Monica Misra, Paul Richardson, Roxanne Tapia, Nina Thayer, Gary Xie, Thomas J. Inzana
  • Genomics and Proteomics
    Genome Analyses of Three Strains of Rhodobacter sphaeroides: Evidence of Rapid Evolution of Chromosome II
    M. Choudhary, Xie Zanhua, Y. X. Fu, S. Kaplan
  • Genomics and Proteomics
    Whole-Genome Analysis of the Methyl tert-Butyl Ether-Degrading Beta-Proteobacterium Methylibium petroleiphilum PM1
    Staci R. Kane, Anu Y. Chakicherla, Patrick S. G. Chain, Radomir Schmidt, Maria W. Shin, Tina C. Legler, Kate M. Scow, Frank W. Larimer, Susan M. Lucas, Paul M. Richardson, Krassimira R. Hristova
  • Genomics and Proteomics
    Genomic Plasticity of the rrn-nqrF Intergenic Segment in the Chlamydiaceae
    Zhi Liu, Roger Rank, Bernhard Kaltenboeck, Simone Magnino, Deborah Dean, Laurel Burall, Roger D. Plaut, Timothy D. Read, Garry Myers, Patrik M. Bavoil

Structural Biology

  • STRUCTURAL BIOLOGY
    The Crystal Structure of Rv0813c from Mycobacterium tuberculosis Reveals a New Family of Fatty Acid-Binding Protein-Like Proteins in Bacteria
    William Shepard, Ahmed Haouz, Martin Graña, Alejandro Buschiazzo, Jean-Michel Betton, Stewart T. Cole, Pedro M. Alzari

Bacteriophages, Transposons, and Plasmids

  • Bacteriophages, Transposons, and Plasmids
    Localization of the Naturally Occurring Plasmid ColE1 at the Cell Pole
    Shiyin Yao, Donald R. Helinski, Aresa Toukdarian
  • Bacteriophages, Transposons, and Plasmids
    The SXT Conjugative Element and Linear Prophage N15 Encode Toxin-Antitoxin-Stabilizing Systems Homologous to the tad-ata Module of the Paracoccus aminophilus Plasmid pAMI2
    Lukasz Dziewit, Magdalena Jazurek, Lukasz Drewniak, Jadwiga Baj, Dariusz Bartosik
  • Bacteriophages, Transposons, and Plasmids
    The Sphingomonas Plasmid pCAR3 Is Involved in Complete Mineralization of Carbazole
    Masaki Shintani, Masaaki Urata, Kengo Inoue, Kaori Eto, Hiroshi Habe, Toshio Omori, Hisakazu Yamane, Hideaki Nojiri
  • Bacteriophages, Transposons, and Plasmids
    First Complete Genome Sequence of Two Staphylococcus epidermidis Bacteriophages
    Anu Daniel, Penelope E. Bonnen, Vincent A. Fischetti
  • Bacteriophages, Transposons, and Plasmids
    Transposon Tn7 Is Widespread in Diverse Bacteria and Forms Genomic Islands
    Adam R. Parks, Joseph E. Peters

Plant Microbiology

  • Plant Microbiology
    hpaR, a Putative marR Family Transcriptional Regulator, Is Positively Controlled by HrpG and HrpX and Involved in the Pathogenesis, Hypersensitive Response, and Extracellular Protease Production of Xanthomonas campestris Pathovar campestris
    Ke Wei, Dong-Jie Tang, Yong-Qiang He, Jia-Xun Feng, Bo-Le Jiang, Guang-Tao Lu, Baoshan Chen, Ji-Liang Tang
  • Plant Microbiology
    Disruption of sitA Compromises Sinorhizobium meliloti for Manganese Uptake Required for Protection against Oxidative Stress
    Bryan W. Davies, Graham C. Walker
  • Plant Microbiology
    Identification of Novel Sinorhizobium meliloti Mutants Compromised for Oxidative Stress Protection and Symbiosis
    Bryan W. Davies, Graham C. Walker
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Journal of Bacteriology: 189 (5)

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volume 189, issue 5
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  • Lag Phase Is a Dynamic, Organized, Adaptive, and Evolvable Period That Prepares Bacteria for Cell Division
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