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Articles

Nonacetogenic Growth of the Acetogen Acetobacterium woodii on 1,2-Propanediol

Kai Schuchmann, Silke Schmidt, Antonio Martinez Lopez, Christina Kaberline, Martin Kuhns, Wolfram Lorenzen, Helge B. Bode, Friederike Joos, Volker Müller
W. W. Metcalf, Editor
Kai Schuchmann
aMolecular Microbiology & Bioenergetics, Institute of Molecular Biosciences, Johann Wolfgang Goethe University, Frankfurt am Main, Germany
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Silke Schmidt
aMolecular Microbiology & Bioenergetics, Institute of Molecular Biosciences, Johann Wolfgang Goethe University, Frankfurt am Main, Germany
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Antonio Martinez Lopez
aMolecular Microbiology & Bioenergetics, Institute of Molecular Biosciences, Johann Wolfgang Goethe University, Frankfurt am Main, Germany
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Christina Kaberline
aMolecular Microbiology & Bioenergetics, Institute of Molecular Biosciences, Johann Wolfgang Goethe University, Frankfurt am Main, Germany
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Martin Kuhns
aMolecular Microbiology & Bioenergetics, Institute of Molecular Biosciences, Johann Wolfgang Goethe University, Frankfurt am Main, Germany
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Wolfram Lorenzen
bMerck Stiftungsprofessur für Molekulare Biotechnologie, Fachbereich Biowissenschaften, Johann Wolfgang Goethe University, Frankfurt am Main, Germany
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Helge B. Bode
bMerck Stiftungsprofessur für Molekulare Biotechnologie, Fachbereich Biowissenschaften, Johann Wolfgang Goethe University, Frankfurt am Main, Germany
cBuchmann Institute for Molecular Life Sciences (BMLS), Johann Wolfgang Goethe University, Frankfurt am Main, Germany
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Friederike Joos
dMax-Planck-Institut für Biophysik, Strukturbiologie, Frankfurt am Main, Germany
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Volker Müller
aMolecular Microbiology & Bioenergetics, Institute of Molecular Biosciences, Johann Wolfgang Goethe University, Frankfurt am Main, Germany
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W. W. Metcalf
Roles: Editor
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DOI: 10.1128/JB.02383-14
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  • FIG 1
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    FIG 1

    Genetic organization of the pdu gene cluster in A. woodii and S. enterica. The genes encoding proteins putatively responsible for 1,2-PD degradation are clustered on the chromosome of A. woodii. The genetic organization resembles the one of S. enterica. The proposed function and the identity (ClustalW2 pairwise alignments of the protein sequences from A. woodii compared to S. enterica) of the encoded proteins are indicated. A, pduA; E, pduE; H, pduH; K, pduK; M, pduM; N, pduN; T, pduT; U, pduU; V, pduV; BMC, bacterial microcompartment.

  • FIG 2
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    FIG 2

    A. woodii grows on 1,2-PD and converts it to propanol and propionate. A. woodii was grown in 50 ml medium in 150-ml serum bottles with 15 mM 1,2-PD. Growth was followed by measuring the OD at 600 nm (circles). Concentrations of 1,2-PD (squares), propanol (inverted triangles), propionaldehyde (triangles), and propionate (diamonds) were determined by gas chromatography. Acetate was determined enzymatically but was not formed during the experiment. All data points are means ± SEM; n = 3 independent experiments.

  • FIG 3
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    FIG 3

    Conversion of 1,2-PD by resting cells. A. woodii was grown on 1,2-PD, harvested, washed twice, and resuspended to a final protein concentration of 1 mg ml−1 in 10 ml buffer in 150-ml serum bottles under N2 atmosphere. Concentrations of 1,2-PD (squares), propanol (inverted triangles), propionaldehyde (triangles), and propionate (diamonds) were determined by gas chromatography. Acetate was determined enzymatically but was not formed during the experiment. All data points are means ± SEM; n = 3 independent experiments.

  • FIG 4
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    FIG 4

    Cell extract (CFE) of A. woodii catalyzes propionaldehyde-dependent NAD reduction and NADH oxidation. The cell extract was prepared from cells grown on 1,2-PD as the substrate. (A) CFE catalyzed propionaldehyde and CoA-dependent reduction of NAD+. After the addition of 10 μl cell extract (protein concentration of 8 mg ml−1), CoA (250 μM), NAD+ (2 mM), and propionaldehyde (20 mM) were added and the reduction of NAD+ was followed at 340 nm. (B) CFE also catalyzed propionaldehyde-specific oxidation of NADH. After the addition of NADH (500 μM), 20 μl cell extract (protein concentration of 6 mg ml−1) and propionaldehyde (20 mM) were added and the oxidation of NADH was followed at 340 nm.

  • FIG 5
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    FIG 5

    Cellular levels of PduB in cells grown on different substrates. A. woodii was grown on the substrates as indicated and harvested in the late exponential growth phase. Cell extracts were separated on a 12% SDS-PAGE gel. The presence of PduB was determined immunologically with antibodies raised against heterologously produced PduB.

  • FIG 6
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    FIG 6

    Enzymatic activities of key enzymes of the WLP and 1,2-PD metabolism in cells grown on 1,2-PD, fructose, or H2 and CO2. (A) A. woodii was grown on the substrates as indicated, and hydrogenase (H2ase), formate dehydrogenase (FDH), carbon monoxide dehydrogenase (CODH), and Fd:NAD oxidoreductase as key enzymes for the WLP were measured in the cell extract. (B) Propanol dehydrogenase and propionaldehyde dehydrogenase were measured in the cell extract as key enzymes of the 1,2-PD metabolism. The specific activities in cell extract from cells grown on fructose were set to 1, and the other activities are relative to this value. Actual activities in cell extract from fructose-grown cells were 62 ± 2 U mg−1 (H2ase), 2 ± 0.1 U mg−1 (FDH), 3.4 ± 0.2 U mg−1 (CODH), 0.15 ± 0.01 U mg−1 (Fd:NAD oxidoreductase), 7 ± 2 mU mg−1 (propanol dehydrogenase), and 0.64 ± 0.12 U mg−1 (propionaldehyde dehydrogenase).

  • FIG 7
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    FIG 7

    Electron microscopic images of A. woodii grown on 1,2-PD (A) or lactate (B). Cells were grown on the respective substrate to the late exponential growth phase. Cells grown on 1,2-PD showed structures with sizes around 100 to 200 nm, resembling microcompartments (m), and much larger structures that could be storage compartments (s).

  • FIG 8
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    FIG 8

    Model of the 1,2-PD metabolism of A. woodii. 1,2-PD is dehydrated to propionaldehyde that is oxidized to propionyl-CoA with NAD+ as the electron acceptor. NADH is reoxidized with propionaldehyde that is reduced to propanol. ADP is phosphorylated with propionyl-phosphate, resulting in the formation of 1 mol of ATP per 2 mol of 1,2-PD by substrate-level phosphorylation.

Additional Files

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    Files in this Data Supplement:

    • Supplemental file 1 -

      Fig. S1, CoA, NAD, and propionaldehyde dependence of the propionaldehyde-dependent NAD reductase activity

      Fig. S2, specificity for the electron donor or electron acceptor of the aldehyde:NAD oxidoreductase or propionaldehyde:acceptor oxidoreductase activity

      Fig. S3, alcohol-dependent NAD reduction

      Fig. S4, specificity for the electron acceptor of the NADH:aldehyde oxidoreductase activity

      Fig. S5, NADH and propionaldehyde dependence of the NADH:propionaldehyde oxidoreductase activity

      Fig. S6, operon analysis of exemplary intergenic regions in the pdu gene cluster

      PDF, 762K

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Nonacetogenic Growth of the Acetogen Acetobacterium woodii on 1,2-Propanediol
Kai Schuchmann, Silke Schmidt, Antonio Martinez Lopez, Christina Kaberline, Martin Kuhns, Wolfram Lorenzen, Helge B. Bode, Friederike Joos, Volker Müller
Journal of Bacteriology Dec 2014, 197 (2) 382-391; DOI: 10.1128/JB.02383-14

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Nonacetogenic Growth of the Acetogen Acetobacterium woodii on 1,2-Propanediol
Kai Schuchmann, Silke Schmidt, Antonio Martinez Lopez, Christina Kaberline, Martin Kuhns, Wolfram Lorenzen, Helge B. Bode, Friederike Joos, Volker Müller
Journal of Bacteriology Dec 2014, 197 (2) 382-391; DOI: 10.1128/JB.02383-14
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